Wall clock time and date at job start Tue Mar 31 2020 23:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47632 * 2 1 4 4 C 1.53043 * 109.46579 * 174.99849 * 3 2 1 5 5 C 1.53189 * 109.31233 * 181.38609 * 4 3 2 6 6 N 1.46923 * 108.77791 * 305.36242 * 5 4 3 7 7 S 1.65597 * 120.63356 * 233.58774 * 6 5 4 8 8 O 1.42099 * 106.40307 * 332.17384 * 7 6 5 9 9 O 1.42101 * 106.40253 * 199.25357 * 7 6 5 10 10 N 1.65604 * 107.21819 * 85.71343 * 7 6 5 11 11 C 1.38816 * 120.00038 * 65.37098 * 10 7 6 12 12 C 1.39796 * 119.58485 * 184.25698 * 11 10 7 13 13 C 1.38594 * 119.49171 * 180.02562 * 12 11 10 14 14 C 1.38389 * 118.68160 * 0.24768 * 13 12 11 15 15 C 1.40561 * 119.14578 * 359.48663 * 14 13 12 16 16 C 1.41321 * 119.78237 * 180.24858 * 15 14 13 17 17 H 1.07996 * 119.99512 * 150.43373 * 16 15 14 18 18 C 1.40022 * 119.99827 * 330.43709 * 16 15 14 19 19 N 1.30743 * 119.99645 * 161.48615 * 18 16 15 20 20 Si 1.86790 * 120.00431 * 341.48392 * 18 16 15 21 21 H 1.48501 * 109.47245 * 90.97808 * 20 18 16 22 22 H 1.48496 * 109.47502 * 210.98265 * 20 18 16 23 23 H 1.48506 * 109.47076 * 330.97982 * 20 18 16 24 24 N 1.31958 * 119.58864 * 4.23732 * 11 10 7 25 25 C 1.46932 * 118.73658 * 53.86556 * 6 5 4 26 26 C 1.53042 * 109.46214 * 295.06839 * 3 2 1 27 27 H 1.09005 * 109.46645 * 59.99846 * 1 2 3 28 28 H 1.08996 * 109.47401 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47314 * 300.00059 * 1 2 3 30 30 H 1.09001 * 109.47314 * 239.99941 * 2 1 3 31 31 H 1.09007 * 109.47340 * 120.00420 * 2 1 3 32 32 H 1.09002 * 109.45779 * 55.02254 * 3 2 1 33 33 H 1.08994 * 109.49216 * 61.43127 * 4 3 2 34 34 H 1.08999 * 109.52228 * 301.35722 * 4 3 2 35 35 H 1.09006 * 109.58135 * 185.57315 * 5 4 3 36 36 H 1.08999 * 109.70672 * 65.22843 * 5 4 3 37 37 H 0.96998 * 119.99685 * 245.38098 * 10 7 6 38 38 H 1.07994 * 120.25524 * 0.02562 * 12 11 10 39 39 H 1.08003 * 120.66100 * 179.97438 * 13 12 11 40 40 H 1.07999 * 120.42855 * 179.75441 * 14 13 12 41 41 H 0.97003 * 120.00129 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.58475 * 65.92124 * 25 6 5 43 43 H 1.08997 * 109.58658 * 186.35419 * 25 6 5 44 44 H 1.08998 * 109.49632 * 298.56928 * 26 3 2 45 45 H 1.09003 * 109.49410 * 58.65927 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5653 1.4440 0.1258 5 6 4.0693 2.8901 0.1603 6 7 3.5609 3.5966 -1.0234 7 16 4.5966 4.3958 -2.0387 8 8 5.7094 4.7899 -1.2478 9 8 3.8041 5.3148 -2.7780 10 7 5.1668 3.2874 -3.1289 11 6 4.2983 2.6953 -4.0356 12 6 4.7702 1.6961 -4.8919 13 6 3.9015 1.1066 -5.7967 14 6 2.5851 1.5327 -5.8278 15 6 2.1697 2.5377 -4.9373 16 6 0.8273 2.9791 -4.9538 17 1 0.3699 3.3507 -4.0488 18 6 0.0903 2.9347 -6.1436 19 7 -1.2155 2.9884 -6.1061 20 14 0.9727 2.7988 -7.7844 21 1 1.1306 1.3668 -8.1444 22 1 0.1780 3.4880 -8.8325 23 1 2.3112 3.4336 -7.6806 24 7 3.0375 3.0823 -4.0781 25 6 2.1152 3.5856 -1.2857 26 6 1.6337 2.1270 -1.3070 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6057 1.9812 0.8421 33 1 4.0013 0.9270 -0.7290 34 1 3.8555 0.9355 1.0452 35 1 5.1593 2.8975 0.1501 36 1 3.7092 3.3835 1.0631 37 1 6.1078 3.0518 -3.1339 38 1 5.8037 1.3859 -4.8487 39 1 4.2460 0.3333 -6.4673 40 1 1.8851 1.0955 -6.5244 41 1 -1.7260 2.9580 -6.9303 42 1 1.5968 4.1330 -0.4984 43 1 1.9154 4.0520 -2.2504 44 1 2.0878 1.6035 -2.1484 45 1 0.5485 2.1048 -1.4072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364957994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:41 Heat of formation + Delta-G solvation = -78.147894 kcal Electronic energy + Delta-G solvation = -29592.228056 eV Core-core repulsion = 25734.682395 eV Total energy + Delta-G solvation = -3857.545662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.66256 -39.71324 -38.35320 -36.96159 -36.63410 -35.58213 -35.10316 -32.95532 -31.95850 -31.11250 -30.94485 -27.44616 -25.88995 -24.24278 -23.88228 -23.35943 -22.49156 -21.07328 -20.27979 -19.93110 -19.13184 -18.38006 -17.91637 -17.37674 -16.67037 -16.49864 -16.06918 -15.68814 -15.60363 -15.33861 -15.07065 -15.01386 -14.75363 -14.66334 -14.26082 -14.09983 -13.70514 -13.62985 -13.45548 -13.39041 -13.19628 -13.04824 -12.83089 -12.78971 -12.67967 -12.53976 -12.28628 -12.09574 -11.99124 -11.85895 -11.78079 -11.49873 -11.14262 -11.07485 -11.04925 -10.32706 -9.99353 -9.82412 -9.11418 -8.92085 -6.61268 -0.48275 0.66211 0.83150 1.26604 1.42139 1.48080 1.75302 2.10679 2.41332 2.60828 3.37340 3.46361 3.73013 3.75115 3.83292 3.93807 4.21222 4.28448 4.32425 4.42571 4.50969 4.61218 4.62242 4.64072 4.66708 4.69928 4.74075 4.83620 4.93304 4.99026 5.06966 5.08961 5.15967 5.23811 5.26245 5.29975 5.32358 5.46954 5.51793 5.55568 5.65869 5.71218 5.74066 5.85613 6.04161 6.31359 6.55808 6.75538 7.66083 8.15033 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.005870 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.563589 B = 4768.492314 C = 6065.489865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.081 4.081 4 C -0.122 4.122 5 C 0.114 3.886 6 N -0.989 5.989 7 S 2.798 3.202 8 O -0.997 6.997 9 O -0.989 6.989 10 N -1.035 6.035 11 C 0.388 3.612 12 C -0.305 4.305 13 C -0.018 4.018 14 C -0.327 4.327 15 C 0.282 3.718 16 C -0.446 4.446 17 H 0.067 0.933 18 C 0.059 3.941 19 N -0.828 5.828 20 Si 0.963 3.037 21 H -0.245 1.245 22 H -0.278 1.278 23 H -0.269 1.269 24 N -0.587 5.587 25 C 0.126 3.874 26 C -0.112 4.112 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.438 0.562 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.114 0.886 41 H 0.297 0.703 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.532 -7.291 9.667 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.099 4.099 4 C -0.160 4.160 5 C -0.010 4.010 6 N -0.831 5.831 7 S 2.806 3.194 8 O -0.981 6.981 9 O -0.972 6.972 10 N -0.786 5.786 11 C 0.150 3.850 12 C -0.331 4.331 13 C -0.043 4.043 14 C -0.349 4.349 15 C 0.156 3.844 16 C -0.479 4.479 17 H 0.085 0.915 18 C -0.160 4.160 19 N -0.453 5.453 20 Si 0.787 3.213 21 H -0.170 1.170 22 H -0.205 1.205 23 H -0.194 1.194 24 N -0.309 5.309 25 C 0.001 3.999 26 C -0.151 4.151 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.275 0.725 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.131 0.869 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.042 -5.602 10.229 14.167 hybrid contribution 0.348 -0.801 -1.543 1.773 sum 8.390 -6.403 8.686 13.669 Atomic orbital electron populations 1.21802 0.96092 1.01638 1.01527 1.21500 0.95811 0.95830 1.01800 1.21141 0.95701 0.96186 0.96919 1.21933 0.95307 0.95718 1.03082 1.21687 0.99271 0.92794 0.87265 1.57708 1.17609 1.70003 1.37736 1.01486 0.72101 0.73415 0.72394 1.93574 1.53541 1.81446 1.69587 1.93601 1.70425 1.61303 1.71853 1.53523 1.18434 1.60097 1.46584 1.18182 0.88434 0.89800 0.88551 1.21205 1.01895 1.05153 1.04890 1.21255 0.91817 0.96176 0.95030 1.21975 0.98476 1.05806 1.08643 1.18150 0.91242 0.88147 0.86897 1.19103 0.93371 1.37880 0.97519 0.91457 1.26638 0.95007 0.90466 1.03874 1.69628 1.07746 1.35278 1.32689 0.85579 0.78868 0.80005 0.76820 1.17005 1.20456 1.19380 1.67565 1.01465 1.30705 1.31193 1.21519 0.78361 0.97910 1.02089 1.21835 1.00139 0.95100 0.97992 0.94356 0.92339 0.91866 0.93674 0.90119 0.90072 0.92824 0.88063 0.89043 0.89251 0.72467 0.83632 0.83443 0.86882 0.89169 0.90825 0.90113 0.93807 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.67 71.98 0.70 -2.80 16 2 C -0.11 -2.47 5.40 30.59 0.17 -2.31 16 3 C -0.08 -1.93 2.15 -10.77 -0.02 -1.95 16 4 C -0.12 -2.54 5.36 30.67 0.16 -2.38 16 5 C 0.11 2.62 6.36 86.36 0.55 3.17 16 6 N -0.99 -31.02 3.34 -512.28 -1.71 -32.73 16 7 S 2.80 100.77 5.75 -56.49 -0.32 100.45 16 8 O -1.00 -35.48 17.00 -128.00 -2.18 -37.66 16 9 O -0.99 -45.52 15.45 -128.00 -1.98 -47.50 16 10 N -1.04 -33.91 5.89 -55.37 -0.33 -34.24 16 11 C 0.39 15.38 7.41 133.42 0.99 16.37 16 12 C -0.31 -10.65 9.95 22.73 0.23 -10.43 16 13 C -0.02 -0.67 10.15 22.39 0.23 -0.44 16 14 C -0.33 -14.48 7.31 22.87 0.17 -14.31 16 15 C 0.28 14.03 5.95 40.18 0.24 14.27 16 16 C -0.45 -24.27 9.78 23.46 0.23 -24.04 16 17 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 18 C 0.06 3.01 5.39 85.29 0.46 3.47 16 19 N -0.83 -43.18 13.92 21.84 0.30 -42.88 16 20 Si 0.96 41.57 24.56 68.60 1.68 43.26 16 21 H -0.25 -9.59 6.48 99.48 0.64 -8.95 16 22 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.27 -12.38 7.05 99.48 0.70 -11.68 16 24 N -0.59 -27.58 5.70 -186.59 -1.06 -28.64 16 25 C 0.13 4.42 5.68 86.51 0.49 4.91 16 26 C -0.11 -3.68 5.16 30.82 0.16 -3.52 16 27 H 0.04 1.06 6.53 -2.38 -0.02 1.04 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.90 7.25 -2.38 -0.02 1.89 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.44 10.71 8.82 -96.75 -0.85 9.85 16 38 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 40 H 0.11 4.94 4.57 -2.91 -0.01 4.93 16 41 H 0.30 13.89 8.29 -92.71 -0.77 13.12 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.08 3.57 5.61 -2.39 -0.01 3.55 16 44 H 0.04 1.70 7.54 -2.39 -0.02 1.68 16 45 H 0.06 2.07 6.50 -2.39 -0.02 2.06 16 Total: -1.00 -66.99 360.54 -0.76 -67.75 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.09 Total: 32.15 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 4.74 Total: -19.97 kcal Atomic # 7 Polarization: -135.69 SS G_CDS: -2.80 Total: -138.49 kcal Atomic # 8 Polarization: -81.00 SS G_CDS: -4.15 Total: -85.15 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.68 Total: 43.26 kcal Atomic # 16 Polarization: 100.77 SS G_CDS: -0.32 Total: 100.45 kcal Total: -66.99 -0.76 -67.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364957994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.396 kcal (2) G-P(sol) polarization free energy of solvation -66.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds