Wall clock time and date at job start Tue Mar 31 2020 22:36:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30252 * 125.62079 * 2 1
4 4 C 1.34476 * 108.70559 * 180.02562 * 3 2 1
5 5 C 1.50698 * 126.16849 * 180.02562 * 4 3 2
6 6 N 1.46899 * 109.47008 * 275.62820 * 5 4 3
7 7 C 1.46895 * 111.00048 * 285.15091 * 6 5 4
8 8 C 1.52999 * 109.47369 * 169.99839 * 7 6 5
9 9 N 1.46495 * 109.47749 * 180.02562 * 8 7 6
10 10 C 1.34774 * 120.00558 * 179.72529 * 9 8 7
11 11 O 1.21286 * 119.99428 * 0.02562 * 10 9 8
12 12 C 1.50697 * 120.00442 * 180.02562 * 10 9 8
13 13 S 1.80997 * 109.47312 * 180.02562 * 12 10 9
14 14 C 1.76202 * 100.00259 * 179.97438 * 13 12 10
15 15 H 1.08000 * 119.99555 * 0.02562 * 14 13 12
16 16 C 1.38791 * 120.00031 * 179.97438 * 14 13 12
17 17 N 1.31630 * 119.99969 * 179.97438 * 16 14 13
18 18 Si 1.86797 * 120.00337 * 0.02562 * 16 14 13
19 19 H 1.48503 * 109.47622 * 89.99438 * 18 16 14
20 20 H 1.48502 * 109.47480 * 209.99757 * 18 16 14
21 21 H 1.48503 * 109.46910 * 329.99457 * 18 16 14
22 22 C 1.46898 * 110.99553 * 161.20083 * 6 5 4
23 23 C 1.52998 * 117.50447 * 10.70711 * 22 6 5
24 24 C 1.52996 * 60.00015 * 252.50934 * 23 22 6
25 25 C 1.34333 * 107.66402 * 0.26084 * 4 3 2
26 26 O 1.33968 * 125.61818 * 180.02562 * 2 1 3
27 27 H 1.08995 * 109.47332 * 89.99523 * 1 2 3
28 28 H 1.08996 * 109.47297 * 209.99514 * 1 2 3
29 29 H 1.09005 * 109.46945 * 329.99793 * 1 2 3
30 30 H 1.09000 * 109.46931 * 155.63034 * 5 4 3
31 31 H 1.09003 * 109.47170 * 35.63358 * 5 4 3
32 32 H 1.09004 * 109.46861 * 50.00266 * 7 6 5
33 33 H 1.08998 * 109.47546 * 290.00571 * 7 6 5
34 34 H 1.09004 * 109.46781 * 60.00377 * 8 7 6
35 35 H 1.08998 * 109.47384 * 300.00831 * 8 7 6
36 36 H 0.97007 * 119.99741 * 0.02562 * 9 8 7
37 37 H 1.08999 * 109.46725 * 300.00058 * 12 10 9
38 38 H 1.08994 * 109.46899 * 59.99856 * 12 10 9
39 39 H 0.97001 * 119.99956 * 180.02562 * 17 16 14
40 40 H 1.09006 * 115.55149 * 156.41577 * 22 6 5
41 41 H 1.09002 * 117.49740 * 0.02562 * 23 22 6
42 42 H 1.09000 * 117.49848 * 145.01739 * 23 22 6
43 43 H 1.09000 * 117.49889 * 252.50805 * 24 23 22
44 44 H 1.08997 * 117.50193 * 107.48923 * 24 23 22
45 45 H 1.08003 * 126.44175 * 179.73569 * 25 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0588 0.0000
4 6 3.5522 0.6675 -0.0006
5 6 4.7570 1.5727 -0.0002
6 7 5.0666 1.9763 -1.3783
7 6 5.6915 0.8743 -2.1219
8 6 5.7710 1.2404 -3.6053
9 7 6.3936 0.1412 -4.3470
10 6 6.5639 0.2391 -5.6804
11 8 6.2020 1.2376 -6.2661
12 6 7.2039 -0.8919 -6.4434
13 16 7.2913 -0.4617 -8.1993
14 6 8.0588 -1.9158 -8.8328
15 1 8.3196 -2.7234 -8.1649
16 6 8.3272 -2.0237 -10.1902
17 7 8.9010 -3.1097 -10.6634
18 14 7.8755 -0.6271 -11.3456
19 1 9.0156 0.3189 -11.4484
20 1 7.5659 -1.1771 -12.6898
21 1 6.6857 0.0873 -10.8171
22 6 5.9176 3.1736 -1.3975
23 6 6.5278 3.6280 -0.0702
24 6 5.3871 4.4286 -0.7016
25 6 3.5697 -0.6757 -0.0068
26 8 2.2872 -1.0890 -0.0005
27 1 -0.3634 0.0001 -1.0276
28 1 -0.3634 -0.8900 0.5137
29 1 -0.3633 0.8900 0.5139
30 1 5.6098 1.0422 0.4232
31 1 4.5460 2.4583 0.5992
32 1 5.0940 -0.0295 -2.0023
33 1 6.6959 0.6994 -1.7365
34 1 6.3684 2.1442 -3.7249
35 1 4.7665 1.4153 -3.9908
36 1 6.6794 -0.6590 -3.8791
37 1 8.2101 -1.0643 -6.0614
38 1 6.6084 -1.7963 -6.3197
39 1 9.0889 -3.1850 -11.6120
40 1 6.5137 3.3122 -2.2995
41 1 6.2983 3.0384 0.8173
42 1 7.5258 4.0656 -0.0987
43 1 5.6346 5.3929 -1.1455
44 1 4.4068 4.3660 -0.2294
45 1 4.4469 -1.3058 -0.0128
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001481158802.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:36:35
Heat of formation + Delta-G solvation = 24.658817 kcal
Electronic energy + Delta-G solvation = -26055.528731 eV
Core-core repulsion = 22202.441103 eV
Total energy + Delta-G solvation = -3853.087628 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-43.66812 -39.75769 -39.01066 -35.60411 -35.23374 -33.83785 -32.47637 -32.43300
-30.42912 -28.92745 -27.70513 -25.78978 -25.54458 -23.21027 -22.70997 -22.06524
-21.54821 -20.55521 -20.01715 -17.93429 -17.60053 -17.16552 -16.84694 -16.43373
-16.25318 -15.87649 -15.20798 -15.05264 -14.93142 -14.68181 -14.35572 -14.05182
-13.74709 -13.57737 -13.50001 -13.19623 -13.06739 -12.95110 -12.79321 -12.52905
-12.15983 -11.89024 -11.75190 -11.64830 -11.31829 -11.26008 -11.03275 -10.99945
-10.82105 -10.68305 -10.60173 -9.85815 -9.54598 -9.13873 -9.01972 -8.95787
-8.58098 -8.49916 -6.91795 -6.29042 -4.00751 1.08783 2.21689 2.41812
2.73239 2.98034 3.14373 3.33312 3.44996 3.51324 3.53670 3.62697
3.82282 4.33407 4.36051 4.39027 4.42339 4.54233 4.62056 4.70946
4.72858 4.79561 4.87520 4.96106 4.99645 5.07019 5.10073 5.14365
5.21022 5.30002 5.31273 5.43897 5.54577 5.56239 5.62370 5.69970
5.77858 5.79876 5.86796 5.92682 6.00441 6.46394 6.52832 6.65638
7.43067 7.58862 7.94034 8.41276 8.48940 9.17222 10.80149
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.013895 B = 0.002135 C = 0.001956
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2014.694372 B =13108.787693 C =14308.079617
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 C 0.189 3.811
3 N -0.467 5.467
4 C -0.001 4.001
5 C 0.132 3.868
6 N -0.495 5.495
7 C 0.044 3.956
8 C 0.126 3.874
9 N -0.737 5.737
10 C 0.531 3.469
11 O -0.517 6.517
12 C -0.124 4.124
13 S -0.141 6.141
14 C -0.521 4.521
15 H 0.088 0.912
16 C 0.095 3.905
17 N -0.881 5.881
18 Si 0.857 3.143
19 H -0.267 1.267
20 H -0.274 1.274
21 H -0.235 1.235
22 C 0.020 3.980
23 C -0.222 4.222
24 C -0.168 4.168
25 C -0.074 4.074
26 O -0.202 6.202
27 H 0.094 0.906
28 H 0.087 0.913
29 H 0.100 0.900
30 H 0.059 0.941
31 H 0.098 0.902
32 H 0.080 0.920
33 H 0.047 0.953
34 H 0.067 0.933
35 H 0.074 0.926
36 H 0.398 0.602
37 H 0.097 0.903
38 H 0.097 0.903
39 H 0.271 0.729
40 H 0.127 0.873
41 H 0.097 0.903
42 H 0.096 0.904
43 H 0.100 0.900
44 H 0.099 0.901
45 H 0.212 0.788
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.246 7.578 28.906 31.928
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.018 4.018
3 N -0.197 5.197
4 C -0.121 4.121
5 C 0.004 3.996
6 N -0.218 5.218
7 C -0.084 4.084
8 C 0.002 3.998
9 N -0.392 5.392
10 C 0.317 3.683
11 O -0.391 6.391
12 C -0.274 4.274
13 S 0.085 5.915
14 C -0.669 4.669
15 H 0.106 0.894
16 C -0.114 4.114
17 N -0.517 5.517
18 Si 0.682 3.318
19 H -0.192 1.192
20 H -0.199 1.199
21 H -0.159 1.159
22 C -0.089 4.089
23 C -0.261 4.261
24 C -0.206 4.206
25 C -0.145 4.145
26 O -0.089 6.089
27 H 0.112 0.888
28 H 0.106 0.894
29 H 0.119 0.881
30 H 0.077 0.923
31 H 0.116 0.884
32 H 0.099 0.901
33 H 0.065 0.935
34 H 0.085 0.915
35 H 0.093 0.907
36 H 0.231 0.769
37 H 0.115 0.885
38 H 0.115 0.885
39 H 0.081 0.919
40 H 0.145 0.855
41 H 0.115 0.885
42 H 0.115 0.885
43 H 0.118 0.882
44 H 0.118 0.882
45 H 0.229 0.771
Dipole moment (debyes) X Y Z Total
from point charges -12.493 9.832 27.524 31.785
hybrid contribution 1.674 -2.118 0.630 2.772
sum -10.819 7.714 28.153 31.131
Atomic orbital electron populations
1.20265 0.81321 1.05013 1.04908 1.26375 0.96616 0.78588 1.00199
1.70333 1.01476 1.30031 1.17875 1.21503 0.93147 0.92150 1.05306
1.20401 0.91304 0.97723 0.90158 1.61548 1.43211 1.04051 1.12948
1.22295 0.98096 0.94307 0.93682 1.21178 0.99243 0.89972 0.89404
1.45869 1.64592 1.20795 1.07982 1.20260 0.78261 0.88418 0.81376
1.90711 1.48759 1.31580 1.68091 1.23272 1.03598 0.99475 1.01082
1.84810 1.80849 1.28142 0.97713 1.22315 1.45252 1.02411 0.96903
0.89396 1.24715 0.93468 0.95843 0.97325 1.69939 1.40410 1.26694
1.14671 0.86731 0.81503 0.82687 0.80918 1.19205 1.19940 1.15886
1.22761 0.98425 0.91264 0.96465 1.23614 0.98827 1.05665 0.97968
1.23096 0.98464 0.95540 1.03485 1.24769 0.85120 0.96092 1.08524
1.84452 1.16817 1.37824 1.69768 0.88758 0.89392 0.88115 0.92305
0.88377 0.90137 0.93476 0.91472 0.90720 0.76853 0.88505 0.88467
0.91944 0.85495 0.88468 0.88541 0.88175 0.88247 0.77137
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.28 10.51 36.00 0.38 0.10 16
2 C 0.19 1.73 8.34 -12.95 -0.11 1.62 16
3 N -0.47 -5.14 11.29 -7.36 -0.08 -5.22 16
4 C 0.00 -0.01 6.14 -82.81 -0.51 -0.51 16
5 C 0.13 1.03 4.17 -4.98 -0.02 1.01 16
6 N -0.50 -4.45 4.65 -228.09 -1.06 -5.51 16
7 C 0.04 0.37 4.90 -3.83 -0.02 0.36 16
8 C 0.13 1.47 5.67 -4.04 -0.02 1.45 16
9 N -0.74 -9.32 5.56 -60.30 -0.33 -9.65 16
10 C 0.53 9.49 7.85 -10.99 -0.09 9.40 16
11 O -0.52 -11.37 15.86 5.55 0.09 -11.28 16
12 C -0.12 -2.38 6.16 36.00 0.22 -2.16 16
13 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16
14 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16
15 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16
16 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16
17 N -0.88 -26.61 13.97 55.49 0.78 -25.84 16
18 Si 0.86 21.89 27.74 -169.99 -4.71 17.17 16
19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16
20 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16
21 H -0.23 -6.00 6.74 56.52 0.38 -5.62 16
22 C 0.02 0.16 5.83 -67.72 -0.39 -0.23 16
23 C -0.22 -1.48 9.56 -26.73 -0.26 -1.74 16
24 C -0.17 -1.28 9.91 -26.73 -0.26 -1.55 16
25 C -0.07 -0.59 11.06 29.35 0.32 -0.27 16
26 O -0.20 -1.90 10.78 5.36 0.06 -1.84 16
27 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16
28 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16
29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16
30 H 0.06 0.35 7.83 -51.93 -0.41 -0.06 16
31 H 0.10 0.78 5.60 -51.93 -0.29 0.49 16
32 H 0.08 0.65 6.58 -51.93 -0.34 0.31 16
33 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16
34 H 0.07 0.83 6.40 -51.93 -0.33 0.50 16
35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
36 H 0.40 3.74 8.47 -40.82 -0.35 3.40 16
37 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16
38 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16
39 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16
40 H 0.13 1.11 6.34 -51.93 -0.33 0.78 16
41 H 0.10 0.58 6.03 -51.93 -0.31 0.27 16
42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16
43 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16
44 H 0.10 0.82 7.46 -51.93 -0.39 0.43 16
45 H 0.21 0.94 8.06 -52.48 -0.42 0.52 16
LS Contribution 387.33 15.07 5.84 5.84
Total: -1.00 -36.77 387.33 -8.52 -45.29
By element:
Atomic # 1 Polarization: 7.75 SS G_CDS: -6.55 Total: 1.20 kcal
Atomic # 6 Polarization: -4.01 SS G_CDS: -0.54 Total: -4.55 kcal
Atomic # 7 Polarization: -45.52 SS G_CDS: -0.70 Total: -46.22 kcal
Atomic # 8 Polarization: -13.26 SS G_CDS: 0.15 Total: -13.12 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal
Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -36.77 -8.52 -45.29 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001481158802.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.945 kcal
(2) G-P(sol) polarization free energy of solvation -36.766 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.179 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.286 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.659 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds