Wall clock time and date at job start Tue Mar 31 2020 22:36:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30252 * 125.62079 * 2 1
4 4 C 1.34476 * 108.70559 * 180.02562 * 3 2 1
5 5 C 1.50698 * 126.16849 * 180.02562 * 4 3 2
6 6 N 1.46899 * 109.47008 * 275.62820 * 5 4 3
7 7 C 1.46895 * 111.00048 * 285.15091 * 6 5 4
8 8 C 1.52999 * 109.47369 * 169.99839 * 7 6 5
9 9 N 1.46495 * 109.47749 * 180.02562 * 8 7 6
10 10 C 1.34774 * 120.00558 * 179.72529 * 9 8 7
11 11 O 1.21286 * 119.99428 * 0.02562 * 10 9 8
12 12 C 1.50697 * 120.00442 * 180.02562 * 10 9 8
13 13 S 1.80997 * 109.47312 * 180.02562 * 12 10 9
14 14 C 1.76202 * 100.00259 * 179.97438 * 13 12 10
15 15 H 1.08000 * 119.99555 * 0.02562 * 14 13 12
16 16 C 1.38791 * 120.00031 * 179.97438 * 14 13 12
17 17 N 1.31630 * 119.99969 * 179.97438 * 16 14 13
18 18 Si 1.86797 * 120.00337 * 0.02562 * 16 14 13
19 19 H 1.48503 * 109.47622 * 89.99438 * 18 16 14
20 20 H 1.48502 * 109.47480 * 209.99757 * 18 16 14
21 21 H 1.48503 * 109.46910 * 329.99457 * 18 16 14
22 22 C 1.46898 * 110.99553 * 161.20083 * 6 5 4
23 23 C 1.52998 * 117.50447 * 10.70711 * 22 6 5
24 24 C 1.52996 * 60.00015 * 252.50934 * 23 22 6
25 25 C 1.34333 * 107.66402 * 0.26084 * 4 3 2
26 26 O 1.33968 * 125.61818 * 180.02562 * 2 1 3
27 27 H 1.08995 * 109.47332 * 89.99523 * 1 2 3
28 28 H 1.08996 * 109.47297 * 209.99514 * 1 2 3
29 29 H 1.09005 * 109.46945 * 329.99793 * 1 2 3
30 30 H 1.09000 * 109.46931 * 155.63034 * 5 4 3
31 31 H 1.09003 * 109.47170 * 35.63358 * 5 4 3
32 32 H 1.09004 * 109.46861 * 50.00266 * 7 6 5
33 33 H 1.08998 * 109.47546 * 290.00571 * 7 6 5
34 34 H 1.09004 * 109.46781 * 60.00377 * 8 7 6
35 35 H 1.08998 * 109.47384 * 300.00831 * 8 7 6
36 36 H 0.97007 * 119.99741 * 0.02562 * 9 8 7
37 37 H 1.08999 * 109.46725 * 300.00058 * 12 10 9
38 38 H 1.08994 * 109.46899 * 59.99856 * 12 10 9
39 39 H 0.97001 * 119.99956 * 180.02562 * 17 16 14
40 40 H 1.09006 * 115.55149 * 156.41577 * 22 6 5
41 41 H 1.09002 * 117.49740 * 0.02562 * 23 22 6
42 42 H 1.09000 * 117.49848 * 145.01739 * 23 22 6
43 43 H 1.09000 * 117.49889 * 252.50805 * 24 23 22
44 44 H 1.08997 * 117.50193 * 107.48923 * 24 23 22
45 45 H 1.08003 * 126.44175 * 179.73569 * 25 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0588 0.0000
4 6 3.5522 0.6675 -0.0006
5 6 4.7570 1.5727 -0.0002
6 7 5.0666 1.9763 -1.3783
7 6 5.6915 0.8743 -2.1219
8 6 5.7710 1.2404 -3.6053
9 7 6.3936 0.1412 -4.3470
10 6 6.5639 0.2391 -5.6804
11 8 6.2020 1.2376 -6.2661
12 6 7.2039 -0.8919 -6.4434
13 16 7.2913 -0.4617 -8.1993
14 6 8.0588 -1.9158 -8.8328
15 1 8.3196 -2.7234 -8.1649
16 6 8.3272 -2.0237 -10.1902
17 7 8.9010 -3.1097 -10.6634
18 14 7.8755 -0.6271 -11.3456
19 1 9.0156 0.3189 -11.4484
20 1 7.5659 -1.1771 -12.6898
21 1 6.6857 0.0873 -10.8171
22 6 5.9176 3.1736 -1.3975
23 6 6.5278 3.6280 -0.0702
24 6 5.3871 4.4286 -0.7016
25 6 3.5697 -0.6757 -0.0068
26 8 2.2872 -1.0890 -0.0005
27 1 -0.3634 0.0001 -1.0276
28 1 -0.3634 -0.8900 0.5137
29 1 -0.3633 0.8900 0.5139
30 1 5.6098 1.0422 0.4232
31 1 4.5460 2.4583 0.5992
32 1 5.0940 -0.0295 -2.0023
33 1 6.6959 0.6994 -1.7365
34 1 6.3684 2.1442 -3.7249
35 1 4.7665 1.4153 -3.9908
36 1 6.6794 -0.6590 -3.8791
37 1 8.2101 -1.0643 -6.0614
38 1 6.6084 -1.7963 -6.3197
39 1 9.0889 -3.1850 -11.6120
40 1 6.5137 3.3122 -2.2995
41 1 6.2983 3.0384 0.8173
42 1 7.5258 4.0656 -0.0987
43 1 5.6346 5.3929 -1.1455
44 1 4.4068 4.3660 -0.2294
45 1 4.4469 -1.3058 -0.0128
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001481158802.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:36:34
Heat of formation + Delta-G solvation = -4.634162 kcal
Electronic energy + Delta-G solvation = -26056.798970 eV
Core-core repulsion = 22202.441103 eV
Total energy + Delta-G solvation = -3854.357867 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-44.29177 -40.79930 -40.00162 -36.45981 -36.06078 -34.68562 -34.62809 -33.11276
-31.60616 -29.83885 -28.45202 -27.84092 -26.41559 -24.00135 -23.29197 -22.71519
-22.18820 -21.86935 -20.71761 -19.87306 -18.33690 -17.88591 -17.79579 -17.42031
-17.27798 -17.07375 -16.94686 -16.34244 -15.78988 -15.57830 -15.28957 -15.22390
-14.91302 -14.65398 -14.56264 -14.23781 -13.89729 -13.74564 -13.64485 -13.34955
-13.31634 -13.08968 -12.99974 -12.73922 -12.58471 -12.44596 -12.32306 -11.98766
-11.86754 -11.69134 -11.48778 -11.27493 -11.17319 -11.05884 -10.53483 -10.17290
-9.73550 -9.17690 -9.00077 -8.51772 -6.22523 0.48688 0.97973 1.31082
1.45770 1.52441 1.54557 1.60389 1.88711 2.13403 2.25069 2.68023
2.83200 2.86489 2.98085 3.15935 3.66640 3.80447 3.84219 3.90266
3.94116 4.00755 4.11733 4.17063 4.23684 4.30884 4.40691 4.46499
4.48364 4.60415 4.64159 4.71653 4.77811 4.82551 4.89500 4.92827
4.98978 5.02954 5.09458 5.24014 5.34237 5.36246 5.70742 5.91775
5.99944 6.11423 6.44088 6.80833 6.93618 7.17354 8.60478
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.013895 B = 0.002135 C = 0.001956
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2014.694372 B =13108.787693 C =14308.079617
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 C 0.179 3.821
3 N -0.504 5.504
4 C -0.023 4.023
5 C 0.137 3.863
6 N -0.513 5.513
7 C 0.056 3.944
8 C 0.131 3.869
9 N -0.709 5.709
10 C 0.535 3.465
11 O -0.564 6.564
12 C -0.110 4.110
13 S -0.179 6.179
14 C -0.527 4.527
15 H 0.064 0.936
16 C 0.045 3.955
17 N -0.916 5.916
18 Si 0.913 3.087
19 H -0.262 1.262
20 H -0.259 1.259
21 H -0.238 1.238
22 C 0.008 3.992
23 C -0.202 4.202
24 C -0.176 4.176
25 C -0.070 4.070
26 O -0.213 6.213
27 H 0.100 0.900
28 H 0.107 0.893
29 H 0.107 0.893
30 H 0.084 0.916
31 H 0.093 0.907
32 H 0.088 0.912
33 H 0.070 0.930
34 H 0.061 0.939
35 H 0.050 0.950
36 H 0.418 0.582
37 H 0.117 0.883
38 H 0.115 0.885
39 H 0.277 0.723
40 H 0.120 0.880
41 H 0.107 0.893
42 H 0.104 0.896
43 H 0.103 0.897
44 H 0.090 0.910
45 H 0.245 0.755
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.209 7.513 30.686 33.522
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.028 4.028
3 N -0.235 5.235
4 C -0.143 4.143
5 C 0.010 3.990
6 N -0.235 5.235
7 C -0.072 4.072
8 C 0.006 3.994
9 N -0.364 5.364
10 C 0.320 3.680
11 O -0.442 6.442
12 C -0.260 4.260
13 S 0.047 5.953
14 C -0.675 4.675
15 H 0.082 0.918
16 C -0.160 4.160
17 N -0.554 5.554
18 Si 0.736 3.264
19 H -0.187 1.187
20 H -0.184 1.184
21 H -0.162 1.162
22 C -0.101 4.101
23 C -0.241 4.241
24 C -0.214 4.214
25 C -0.141 4.141
26 O -0.100 6.100
27 H 0.119 0.881
28 H 0.126 0.874
29 H 0.126 0.874
30 H 0.101 0.899
31 H 0.111 0.889
32 H 0.106 0.894
33 H 0.088 0.912
34 H 0.080 0.920
35 H 0.068 0.932
36 H 0.255 0.745
37 H 0.135 0.865
38 H 0.133 0.867
39 H 0.086 0.914
40 H 0.138 0.862
41 H 0.125 0.875
42 H 0.123 0.877
43 H 0.121 0.879
44 H 0.108 0.892
45 H 0.261 0.739
Dipole moment (debyes) X Y Z Total
from point charges -12.449 9.738 29.361 33.345
hybrid contribution 1.630 -2.119 0.247 2.685
sum -10.819 7.619 29.608 32.431
Atomic orbital electron populations
1.20462 0.79002 1.06323 1.05662 1.27141 0.97952 0.78255 0.99437
1.70321 1.02672 1.31258 1.19250 1.21828 0.93108 0.93111 1.06240
1.20413 0.91583 0.97631 0.89376 1.61462 1.43797 1.04334 1.13932
1.22170 0.99548 0.94346 0.91150 1.21188 0.97486 0.89387 0.91305
1.45572 1.62803 1.21793 1.06233 1.19986 0.77980 0.87218 0.82780
1.90703 1.51031 1.33086 1.69387 1.23255 1.05486 1.00702 0.96597
1.84775 1.80468 1.26830 1.03182 1.22450 1.45102 1.02973 0.96943
0.91771 1.25552 0.93491 0.98049 0.98930 1.70013 1.41561 1.28379
1.15478 0.85877 0.81166 0.79926 0.79474 1.18685 1.18357 1.16188
1.22738 0.98941 0.91337 0.97081 1.23636 0.98671 1.04566 0.97268
1.23101 0.98636 0.95696 1.03930 1.25408 0.85501 0.96151 1.07040
1.84465 1.17511 1.38125 1.69901 0.88136 0.87442 0.87430 0.89852
0.88922 0.89383 0.91200 0.92042 0.93195 0.74457 0.86499 0.86686
0.91371 0.86223 0.87477 0.87719 0.87863 0.89166 0.73871
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.50 10.51 71.23 0.75 0.25 16
2 C 0.18 3.14 8.34 88.34 0.74 3.88 16
3 N -0.50 -10.85 11.29 -291.99 -3.30 -14.15 16
4 C -0.02 -0.40 6.14 41.26 0.25 -0.15 16
5 C 0.14 1.88 4.17 85.56 0.36 2.23 16
6 N -0.51 -8.38 4.65 -875.54 -4.07 -12.45 16
7 C 0.06 0.80 4.90 86.30 0.42 1.22 16
8 C 0.13 2.85 5.67 86.38 0.49 3.34 16
9 N -0.71 -16.26 5.56 -463.07 -2.57 -18.83 16
10 C 0.53 18.32 7.85 87.66 0.69 19.00 16
11 O -0.56 -24.58 15.86 -3.05 -0.05 -24.63 16
12 C -0.11 -4.04 6.16 71.23 0.44 -3.60 16
13 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16
14 C -0.53 -30.57 10.04 67.95 0.68 -29.88 16
15 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16
16 C 0.05 2.65 5.50 84.86 0.47 3.12 16
17 N -0.92 -55.69 13.97 21.65 0.30 -55.39 16
18 Si 0.91 45.17 27.74 68.60 1.90 47.07 16
19 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16
20 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16
21 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16
22 C 0.01 0.12 5.83 44.91 0.26 0.38 16
23 C -0.20 -2.30 9.56 30.59 0.29 -2.00 16
24 C -0.18 -2.56 9.91 30.59 0.30 -2.25 16
25 C -0.07 -0.98 11.06 66.93 0.74 -0.24 16
26 O -0.21 -3.71 10.78 -3.75 -0.04 -3.75 16
27 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16
28 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16
29 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16
30 H 0.08 0.70 7.83 -2.39 -0.02 0.68 16
31 H 0.09 1.36 5.60 -2.39 -0.01 1.34 16
32 H 0.09 1.16 6.58 -2.39 -0.02 1.14 16
33 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16
34 H 0.06 1.46 6.40 -2.39 -0.02 1.44 16
35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16
36 H 0.42 6.37 8.47 -92.70 -0.79 5.58 16
37 H 0.12 3.88 8.14 -2.40 -0.02 3.86 16
38 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16
39 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16
40 H 0.12 1.99 6.34 -2.38 -0.02 1.97 16
41 H 0.11 1.01 6.03 -2.39 -0.01 0.99 16
42 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16
43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16
44 H 0.09 1.48 7.46 -2.39 -0.02 1.46 16
45 H 0.25 1.31 8.06 -2.91 -0.02 1.29 16
Total: -1.00 -80.86 387.33 -1.79 -82.66
By element:
Atomic # 1 Polarization: 14.09 SS G_CDS: 0.20 Total: 14.28 kcal
Atomic # 6 Polarization: -11.58 SS G_CDS: 6.88 Total: -4.70 kcal
Atomic # 7 Polarization: -91.19 SS G_CDS: -9.64 Total: -100.83 kcal
Atomic # 8 Polarization: -28.29 SS G_CDS: -0.09 Total: -28.38 kcal
Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal
Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal
Total: -80.86 -1.79 -82.66 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001481158802.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.023 kcal
(2) G-P(sol) polarization free energy of solvation -80.864 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.841 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.793 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.657 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.634 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds