Wall clock time and date at job start Tue Mar 31 2020 22:35:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.30251 * 125.61595 * 2 1
4 4 C 1.34476 * 108.70362 * 180.26077 * 3 2 1
5 5 C 1.50703 * 126.17164 * 180.02562 * 4 3 2
6 6 N 1.46893 * 109.47360 * 274.98441 * 5 4 3
7 7 C 1.46898 * 111.00192 * 175.28974 * 6 5 4
8 8 C 1.53000 * 112.84957 * 290.68826 * 7 6 5
9 9 N 1.46511 * 109.46923 * 312.17615 * 8 7 6
10 10 C 1.34776 * 119.99681 * 174.70811 * 9 8 7
11 11 O 1.21275 * 120.00322 * 359.97438 * 10 9 8
12 12 C 1.50702 * 119.99453 * 179.97438 * 10 9 8
13 13 S 1.81006 * 109.46744 * 179.97438 * 12 10 9
14 14 C 1.76201 * 99.99683 * 179.97438 * 13 12 10
15 15 H 1.07999 * 120.00356 * 359.97438 * 14 13 12
16 16 C 1.38799 * 119.99817 * 180.02562 * 14 13 12
17 17 N 1.31629 * 120.00261 * 359.97438 * 16 14 13
18 18 Si 1.86806 * 120.00036 * 179.97438 * 16 14 13
19 19 H 1.48501 * 109.46739 * 359.97438 * 18 16 14
20 20 H 1.48495 * 109.46882 * 120.00074 * 18 16 14
21 21 H 1.48496 * 109.46978 * 240.00118 * 18 16 14
22 22 C 1.53779 * 113.61730 * 159.37905 * 7 6 5
23 23 C 1.53775 * 87.08272 * 220.01688 * 22 7 6
24 24 C 1.53779 * 113.61342 * 61.87959 * 7 6 5
25 25 C 1.34331 * 107.66673 * 0.02562 * 4 3 2
26 26 O 1.33966 * 125.62092 * 180.30841 * 2 1 3
27 27 H 1.08998 * 109.47074 * 179.71801 * 1 2 3
28 28 H 1.09006 * 109.47522 * 299.71607 * 1 2 3
29 29 H 1.09004 * 109.47186 * 59.71614 * 1 2 3
30 30 H 1.09002 * 109.46300 * 34.98328 * 5 4 3
31 31 H 1.08994 * 109.47233 * 154.97719 * 5 4 3
32 32 H 1.00906 * 111.00101 * 299.24540 * 6 5 4
33 33 H 1.08999 * 109.47414 * 72.16917 * 8 7 6
34 34 H 1.09001 * 109.47252 * 192.18061 * 8 7 6
35 35 H 0.97002 * 119.99604 * 354.70144 * 9 8 7
36 36 H 1.09000 * 109.47501 * 299.99462 * 12 10 9
37 37 H 1.09001 * 109.47464 * 59.99939 * 12 10 9
38 38 H 0.96999 * 119.99916 * 179.97438 * 17 16 14
39 39 H 1.09001 * 113.61673 * 334.57190 * 22 7 6
40 40 H 1.09004 * 113.61597 * 105.47020 * 22 7 6
41 41 H 1.08990 * 113.61994 * 270.88275 * 23 22 7
42 42 H 1.09003 * 113.61352 * 139.97628 * 23 22 7
43 43 H 1.09000 * 113.61742 * 254.52829 * 24 7 6
44 44 H 1.09000 * 113.61212 * 25.44126 * 24 7 6
45 45 H 1.08001 * 126.44776 * 179.97438 * 25 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2655 1.0589 0.0000
4 6 3.5521 0.6677 -0.0058
5 6 4.7570 1.5729 -0.0073
6 7 5.0713 1.9674 -1.3869
7 6 6.1723 2.9395 -1.4186
8 6 5.7769 4.3038 -0.8501
9 7 4.5009 4.7249 -1.4340
10 6 3.9005 5.8510 -1.0006
11 8 4.4162 6.5154 -0.1269
12 6 2.5883 6.2844 -1.6017
13 16 2.0426 7.8206 -0.8151
14 6 0.5331 8.0894 -1.6833
15 1 0.2157 7.3912 -2.4437
16 6 -0.2476 9.1991 -1.3908
17 7 0.1394 10.0505 -0.4645
18 14 -1.8476 9.4845 -2.3118
19 1 -2.0542 8.3914 -3.2955
20 1 -2.9769 9.5038 -1.3478
21 1 -1.7831 10.7856 -3.0247
22 6 6.8841 3.0199 -2.7794
23 6 8.2017 3.1343 -1.9949
24 6 7.4923 2.3939 -0.8488
25 6 3.5698 -0.6755 -0.0100
26 8 2.2873 -1.0890 -0.0059
27 1 -0.3633 -1.0276 -0.0051
28 1 -0.3634 0.5094 0.8925
29 1 -0.3634 0.5182 -0.8874
30 1 4.5437 2.4624 0.5854
31 1 5.6083 1.0453 0.4227
32 1 5.2848 1.1606 -1.9541
33 1 5.6742 4.2304 0.2326
34 1 6.5469 5.0358 -1.0934
35 1 4.0883 4.1932 -2.1327
36 1 2.7154 6.4490 -2.6716
37 1 1.8404 5.5082 -1.4398
38 1 -0.4060 10.8262 -0.2604
39 1 6.8045 2.1063 -3.3685
40 1 6.6363 3.9152 -3.3496
41 1 8.4756 4.1601 -1.7485
42 1 9.0233 2.5702 -2.4366
43 1 7.7356 2.7838 0.1395
44 1 7.5790 1.3090 -0.9102
45 1 4.4469 -1.3056 -0.0155
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001484625480.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:35:22
Heat of formation + Delta-G solvation = 7.615556 kcal
Electronic energy + Delta-G solvation = -26744.898290 eV
Core-core repulsion = 22891.071611 eV
Total energy + Delta-G solvation = -3853.826679 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-43.51400 -40.41566 -38.54636 -35.76048 -34.13428 -33.77360 -32.34423 -32.03213
-29.68195 -28.37433 -26.70773 -26.36576 -25.53588 -25.27455 -22.74929 -21.78710
-21.11552 -20.09044 -19.12574 -17.67149 -17.45722 -17.00741 -16.61562 -16.19834
-15.96514 -15.11083 -14.98207 -14.90752 -14.73367 -14.69763 -14.32143 -13.87389
-13.68611 -13.34729 -13.32209 -13.06604 -12.82509 -12.70284 -12.61592 -12.48071
-12.28131 -11.87987 -11.53445 -11.45189 -11.13520 -11.00907 -10.94439 -10.92597
-10.68018 -10.59443 -10.54669 -9.71254 -9.23952 -9.01476 -8.99485 -8.68752
-8.62925 -8.11430 -6.38855 -6.13513 -3.82342 1.22051 2.42989 2.54426
3.15868 3.26802 3.30273 3.34022 3.39798 3.67999 3.81216 4.03107
4.17941 4.28789 4.30041 4.39848 4.50366 4.57946 4.60943 4.96740
5.13235 5.14759 5.17999 5.21534 5.25950 5.28185 5.35448 5.36385
5.46023 5.53595 5.60557 5.65871 5.69712 5.72268 5.74785 5.82063
5.92836 5.98635 6.07328 6.08908 6.32331 6.61553 6.87400 7.04343
7.61358 7.68515 7.99993 8.44313 8.83028 9.31986 10.94042
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.008874 B = 0.003102 C = 0.002416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3154.514887 B = 9023.533855 C =11584.421488
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 C 0.190 3.810
3 N -0.460 5.460
4 C 0.001 3.999
5 C 0.141 3.859
6 N -0.665 5.665
7 C 0.086 3.914
8 C 0.154 3.846
9 N -0.721 5.721
10 C 0.532 3.468
11 O -0.527 6.527
12 C -0.150 4.150
13 S -0.063 6.063
14 C -0.531 4.531
15 H 0.072 0.928
16 C 0.072 3.928
17 N -0.869 5.869
18 Si 0.917 3.083
19 H -0.272 1.272
20 H -0.280 1.280
21 H -0.281 1.281
22 C -0.130 4.130
23 C -0.139 4.139
24 C -0.167 4.167
25 C -0.082 4.082
26 O -0.206 6.206
27 H 0.085 0.915
28 H 0.098 0.902
29 H 0.099 0.901
30 H 0.094 0.906
31 H 0.049 0.951
32 H 0.343 0.657
33 H 0.066 0.934
34 H 0.069 0.931
35 H 0.406 0.594
36 H 0.087 0.913
37 H 0.090 0.910
38 H 0.267 0.733
39 H 0.084 0.916
40 H 0.078 0.922
41 H 0.086 0.914
42 H 0.070 0.930
43 H 0.073 0.927
44 H 0.082 0.918
45 H 0.210 0.790
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.822 -25.939 -2.534 28.619
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.017 4.017
3 N -0.190 5.190
4 C -0.119 4.119
5 C 0.012 3.988
6 N -0.296 5.296
7 C -0.006 4.006
8 C 0.029 3.971
9 N -0.376 5.376
10 C 0.318 3.682
11 O -0.402 6.402
12 C -0.300 4.300
13 S 0.164 5.836
14 C -0.680 4.680
15 H 0.091 0.909
16 C -0.136 4.136
17 N -0.504 5.504
18 Si 0.744 3.256
19 H -0.196 1.196
20 H -0.206 1.206
21 H -0.206 1.206
22 C -0.168 4.168
23 C -0.177 4.177
24 C -0.207 4.207
25 C -0.154 4.154
26 O -0.093 6.093
27 H 0.104 0.896
28 H 0.117 0.883
29 H 0.118 0.882
30 H 0.112 0.888
31 H 0.067 0.933
32 H 0.161 0.839
33 H 0.084 0.916
34 H 0.087 0.913
35 H 0.241 0.759
36 H 0.105 0.895
37 H 0.108 0.892
38 H 0.076 0.924
39 H 0.102 0.898
40 H 0.096 0.904
41 H 0.104 0.896
42 H 0.088 0.912
43 H 0.092 0.908
44 H 0.100 0.900
45 H 0.227 0.773
Dipole moment (debyes) X Y Z Total
from point charges 11.878 -23.611 -0.998 26.449
hybrid contribution -0.663 -2.227 -1.696 2.877
sum 11.215 -25.838 -2.694 28.295
Atomic orbital electron populations
1.20279 0.81248 1.04463 1.05550 1.26455 0.96653 0.78489 1.00112
1.70433 1.01471 1.29796 1.17277 1.21603 0.93355 0.92032 1.04956
1.20075 0.90449 0.97507 0.90776 1.60079 1.41815 1.17121 1.10555
1.22582 0.87622 0.93036 0.97350 1.20900 0.86657 0.91692 0.97842
1.45725 1.23058 1.26300 1.42503 1.20260 0.85916 0.79824 0.82172
1.90681 1.65338 1.53654 1.30557 1.23490 0.96512 1.05988 1.04034
1.85340 1.26063 1.21025 1.51167 1.22925 1.07550 1.12685 1.24828
0.90931 1.24983 0.98339 0.94991 0.95325 1.70036 1.37950 1.12497
1.29950 0.86134 0.81907 0.78206 0.79355 1.19616 1.20619 1.20648
1.23120 0.95146 1.03044 0.95526 1.22761 0.96749 1.01273 0.96895
1.23614 0.97195 1.00278 0.99590 1.24693 0.85095 0.96108 1.09463
1.84440 1.16821 1.38026 1.70030 0.89597 0.88306 0.88246 0.88774
0.93299 0.83850 0.91585 0.91253 0.75915 0.89511 0.89167 0.92358
0.89776 0.90358 0.89558 0.91173 0.90821 0.89964 0.77312
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16
2 C 0.19 2.10 8.34 -12.95 -0.11 1.99 16
3 N -0.46 -6.25 11.29 -7.36 -0.08 -6.33 16
4 C 0.00 0.01 6.66 -82.81 -0.55 -0.54 16
5 C 0.14 1.34 5.84 -4.98 -0.03 1.32 16
6 N -0.66 -5.81 5.76 -100.40 -0.58 -6.38 16
7 C 0.09 0.73 0.80 -130.79 -0.10 0.62 16
8 C 0.15 1.91 4.63 -4.04 -0.02 1.89 16
9 N -0.72 -10.76 5.38 -60.29 -0.32 -11.09 16
10 C 0.53 10.70 7.85 -10.98 -0.09 10.62 16
11 O -0.53 -12.58 15.86 5.56 0.09 -12.50 16
12 C -0.15 -3.26 6.16 36.01 0.22 -3.03 16
13 S -0.06 -1.77 20.57 -107.50 -2.21 -3.98 16
14 C -0.53 -15.64 9.50 30.94 0.29 -15.34 16
15 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16
16 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16
17 N -0.87 -26.78 13.22 55.49 0.73 -26.05 16
18 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16
19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
22 C -0.13 -0.96 7.33 -25.92 -0.19 -1.15 16
23 C -0.14 -0.93 7.73 -25.92 -0.20 -1.13 16
24 C -0.17 -1.12 6.44 -25.92 -0.17 -1.29 16
25 C -0.08 -0.72 12.08 29.35 0.35 -0.36 16
26 O -0.21 -2.13 10.78 5.36 0.06 -2.07 16
27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16
28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16
30 H 0.09 1.16 6.97 -51.93 -0.36 0.80 16
31 H 0.05 0.35 7.54 -51.93 -0.39 -0.04 16
32 H 0.34 2.43 8.51 -39.29 -0.33 2.09 16
33 H 0.07 0.91 7.40 -51.93 -0.38 0.52 16
34 H 0.07 0.88 7.36 -51.93 -0.38 0.49 16
35 H 0.41 5.49 8.10 -40.82 -0.33 5.16 16
36 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16
37 H 0.09 1.89 8.14 -51.92 -0.42 1.47 16
38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16
39 H 0.08 0.52 7.95 -51.93 -0.41 0.11 16
40 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16
41 H 0.09 0.63 7.67 -51.93 -0.40 0.23 16
42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
43 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16
44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
45 H 0.21 0.95 8.06 -52.49 -0.42 0.52 16
LS Contribution 391.95 15.07 5.91 5.91
Total: -1.00 -37.29 391.95 -8.50 -45.79
By element:
Atomic # 1 Polarization: 11.00 SS G_CDS: -6.76 Total: 4.24 kcal
Atomic # 6 Polarization: -4.13 SS G_CDS: -0.30 Total: -4.43 kcal
Atomic # 7 Polarization: -49.60 SS G_CDS: -0.25 Total: -49.85 kcal
Atomic # 8 Polarization: -14.71 SS G_CDS: 0.15 Total: -14.56 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal
Atomic # 16 Polarization: -1.77 SS G_CDS: -2.21 Total: -3.98 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -37.29 -8.50 -45.79 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484625480.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.408 kcal
(2) G-P(sol) polarization free energy of solvation -37.292 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.116 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.792 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.616 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds