Wall clock time and date at job start Tue Mar 31 2020 22:35:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.30251 * 125.61595 * 2 1
4 4 C 1.34476 * 108.70362 * 180.26077 * 3 2 1
5 5 C 1.50703 * 126.17164 * 180.02562 * 4 3 2
6 6 N 1.46893 * 109.47360 * 274.98441 * 5 4 3
7 7 C 1.46898 * 111.00192 * 175.28974 * 6 5 4
8 8 C 1.53000 * 112.84957 * 290.68826 * 7 6 5
9 9 N 1.46511 * 109.46923 * 312.17615 * 8 7 6
10 10 C 1.34776 * 119.99681 * 174.70811 * 9 8 7
11 11 O 1.21275 * 120.00322 * 359.97438 * 10 9 8
12 12 C 1.50702 * 119.99453 * 179.97438 * 10 9 8
13 13 S 1.81006 * 109.46744 * 179.97438 * 12 10 9
14 14 C 1.76201 * 99.99683 * 179.97438 * 13 12 10
15 15 H 1.07999 * 120.00356 * 359.97438 * 14 13 12
16 16 C 1.38799 * 119.99817 * 180.02562 * 14 13 12
17 17 N 1.31629 * 120.00261 * 359.97438 * 16 14 13
18 18 Si 1.86806 * 120.00036 * 179.97438 * 16 14 13
19 19 H 1.48501 * 109.46739 * 359.97438 * 18 16 14
20 20 H 1.48495 * 109.46882 * 120.00074 * 18 16 14
21 21 H 1.48496 * 109.46978 * 240.00118 * 18 16 14
22 22 C 1.53779 * 113.61730 * 159.37905 * 7 6 5
23 23 C 1.53775 * 87.08272 * 220.01688 * 22 7 6
24 24 C 1.53779 * 113.61342 * 61.87959 * 7 6 5
25 25 C 1.34331 * 107.66673 * 0.02562 * 4 3 2
26 26 O 1.33966 * 125.62092 * 180.30841 * 2 1 3
27 27 H 1.08998 * 109.47074 * 179.71801 * 1 2 3
28 28 H 1.09006 * 109.47522 * 299.71607 * 1 2 3
29 29 H 1.09004 * 109.47186 * 59.71614 * 1 2 3
30 30 H 1.09002 * 109.46300 * 34.98328 * 5 4 3
31 31 H 1.08994 * 109.47233 * 154.97719 * 5 4 3
32 32 H 1.00906 * 111.00101 * 299.24540 * 6 5 4
33 33 H 1.08999 * 109.47414 * 72.16917 * 8 7 6
34 34 H 1.09001 * 109.47252 * 192.18061 * 8 7 6
35 35 H 0.97002 * 119.99604 * 354.70144 * 9 8 7
36 36 H 1.09000 * 109.47501 * 299.99462 * 12 10 9
37 37 H 1.09001 * 109.47464 * 59.99939 * 12 10 9
38 38 H 0.96999 * 119.99916 * 179.97438 * 17 16 14
39 39 H 1.09001 * 113.61673 * 334.57190 * 22 7 6
40 40 H 1.09004 * 113.61597 * 105.47020 * 22 7 6
41 41 H 1.08990 * 113.61994 * 270.88275 * 23 22 7
42 42 H 1.09003 * 113.61352 * 139.97628 * 23 22 7
43 43 H 1.09000 * 113.61742 * 254.52829 * 24 7 6
44 44 H 1.09000 * 113.61212 * 25.44126 * 24 7 6
45 45 H 1.08001 * 126.44776 * 179.97438 * 25 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2655 1.0589 0.0000
4 6 3.5521 0.6677 -0.0058
5 6 4.7570 1.5729 -0.0073
6 7 5.0713 1.9674 -1.3869
7 6 6.1723 2.9395 -1.4186
8 6 5.7769 4.3038 -0.8501
9 7 4.5009 4.7249 -1.4340
10 6 3.9005 5.8510 -1.0006
11 8 4.4162 6.5154 -0.1269
12 6 2.5883 6.2844 -1.6017
13 16 2.0426 7.8206 -0.8151
14 6 0.5331 8.0894 -1.6833
15 1 0.2157 7.3912 -2.4437
16 6 -0.2476 9.1991 -1.3908
17 7 0.1394 10.0505 -0.4645
18 14 -1.8476 9.4845 -2.3118
19 1 -2.0542 8.3914 -3.2955
20 1 -2.9769 9.5038 -1.3478
21 1 -1.7831 10.7856 -3.0247
22 6 6.8841 3.0199 -2.7794
23 6 8.2017 3.1343 -1.9949
24 6 7.4923 2.3939 -0.8488
25 6 3.5698 -0.6755 -0.0100
26 8 2.2873 -1.0890 -0.0059
27 1 -0.3633 -1.0276 -0.0051
28 1 -0.3634 0.5094 0.8925
29 1 -0.3634 0.5182 -0.8874
30 1 4.5437 2.4624 0.5854
31 1 5.6083 1.0453 0.4227
32 1 5.2848 1.1606 -1.9541
33 1 5.6742 4.2304 0.2326
34 1 6.5469 5.0358 -1.0934
35 1 4.0883 4.1932 -2.1327
36 1 2.7154 6.4490 -2.6716
37 1 1.8404 5.5082 -1.4398
38 1 -0.4060 10.8262 -0.2604
39 1 6.8045 2.1063 -3.3685
40 1 6.6363 3.9152 -3.3496
41 1 8.4756 4.1601 -1.7485
42 1 9.0233 2.5702 -2.4366
43 1 7.7356 2.7838 0.1395
44 1 7.5790 1.3090 -0.9102
45 1 4.4469 -1.3056 -0.0155
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001484625480.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:35:21
Heat of formation + Delta-G solvation = -22.555250 kcal
Electronic energy + Delta-G solvation = -26746.206594 eV
Core-core repulsion = 22891.071611 eV
Total energy + Delta-G solvation = -3855.134984 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-44.26569 -41.28220 -40.00028 -36.49718 -35.31235 -34.74154 -34.57662 -32.70153
-31.29467 -29.10788 -27.95677 -27.46583 -27.00501 -26.16552 -23.44506 -22.56013
-21.87505 -21.62695 -20.15407 -19.50744 -18.18367 -17.81032 -17.72922 -17.45978
-16.98494 -16.87536 -16.40489 -16.19330 -15.66793 -15.60341 -15.47154 -15.05817
-14.65233 -14.55324 -14.41216 -14.27222 -13.90793 -13.71853 -13.44876 -13.27459
-13.15382 -13.13220 -13.03594 -12.90030 -12.58895 -12.47784 -12.19977 -11.85253
-11.72103 -11.54401 -11.40441 -11.20826 -11.14992 -10.93465 -10.27537 -10.03040
-9.72225 -9.34565 -8.65774 -8.33899 -6.11936 0.50954 1.27673 1.41870
1.47213 1.59118 1.64371 1.65547 1.88720 2.27155 2.33436 2.99906
3.03614 3.24685 3.35741 3.50795 3.61408 3.65059 3.89705 3.92673
3.98900 4.06197 4.28947 4.38264 4.45243 4.50661 4.51094 4.59134
4.61498 4.62959 4.69807 4.80847 4.83113 4.87355 5.00331 5.08023
5.10727 5.11641 5.16004 5.35675 5.40379 5.42513 5.50807 5.96169
6.20916 6.46533 6.58578 6.86177 7.07051 7.29121 8.75804
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.008874 B = 0.003102 C = 0.002416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3154.514887 B = 9023.533855 C =11584.421488
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 C 0.180 3.820
3 N -0.511 5.511
4 C -0.029 4.029
5 C 0.149 3.851
6 N -0.672 5.672
7 C 0.087 3.913
8 C 0.151 3.849
9 N -0.695 5.695
10 C 0.532 3.468
11 O -0.571 6.571
12 C -0.125 4.125
13 S -0.147 6.147
14 C -0.546 4.546
15 H 0.080 0.920
16 C 0.013 3.987
17 N -0.911 5.911
18 Si 1.000 3.000
19 H -0.258 1.258
20 H -0.272 1.272
21 H -0.272 1.272
22 C -0.124 4.124
23 C -0.137 4.137
24 C -0.155 4.155
25 C -0.063 4.063
26 O -0.211 6.211
27 H 0.111 0.889
28 H 0.099 0.901
29 H 0.100 0.900
30 H 0.057 0.943
31 H 0.077 0.923
32 H 0.357 0.643
33 H 0.049 0.951
34 H 0.067 0.933
35 H 0.416 0.584
36 H 0.106 0.894
37 H 0.099 0.901
38 H 0.271 0.729
39 H 0.105 0.895
40 H 0.064 0.936
41 H 0.074 0.926
42 H 0.087 0.913
43 H 0.067 0.933
44 H 0.106 0.894
45 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.059 -28.920 -4.389 31.639
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.027 4.027
3 N -0.242 5.242
4 C -0.149 4.149
5 C 0.021 3.979
6 N -0.304 5.304
7 C -0.004 4.004
8 C 0.027 3.973
9 N -0.348 5.348
10 C 0.318 3.682
11 O -0.450 6.450
12 C -0.276 4.276
13 S 0.080 5.920
14 C -0.694 4.694
15 H 0.098 0.902
16 C -0.191 4.191
17 N -0.548 5.548
18 Si 0.822 3.178
19 H -0.181 1.181
20 H -0.198 1.198
21 H -0.197 1.197
22 C -0.162 4.162
23 C -0.175 4.175
24 C -0.195 4.195
25 C -0.133 4.133
26 O -0.098 6.098
27 H 0.129 0.871
28 H 0.118 0.882
29 H 0.119 0.881
30 H 0.075 0.925
31 H 0.095 0.905
32 H 0.178 0.822
33 H 0.067 0.933
34 H 0.085 0.915
35 H 0.253 0.747
36 H 0.124 0.876
37 H 0.117 0.883
38 H 0.080 0.920
39 H 0.123 0.877
40 H 0.083 0.917
41 H 0.093 0.907
42 H 0.106 0.894
43 H 0.085 0.915
44 H 0.124 0.876
45 H 0.269 0.731
Dipole moment (debyes) X Y Z Total
from point charges 12.142 -26.650 -2.883 29.427
hybrid contribution -0.645 -1.395 -1.104 1.892
sum 11.497 -28.045 -3.987 30.572
Atomic orbital electron populations
1.20434 0.79318 1.06158 1.05571 1.27034 0.97781 0.78265 0.99653
1.70395 1.03205 1.31589 1.19028 1.21872 0.92890 0.93355 1.06747
1.19954 0.91083 0.96097 0.90814 1.59956 1.42126 1.17844 1.10521
1.22424 0.88441 0.90904 0.98667 1.21069 0.84909 0.94279 0.97054
1.45503 1.23415 1.24267 1.41620 1.20018 0.85508 0.80889 0.81813
1.90664 1.66333 1.55429 1.32609 1.23313 0.97593 1.02404 1.04339
1.85493 1.27248 1.25855 1.53429 1.23230 1.07702 1.13380 1.25104
0.90190 1.26142 1.02506 0.94346 0.96123 1.70193 1.39780 1.13177
1.31632 0.84889 0.76317 0.78592 0.78035 1.18136 1.19761 1.19729
1.23135 0.94939 1.03437 0.94708 1.22747 0.97025 1.00992 0.96704
1.23595 0.95124 1.01585 0.99219 1.25438 0.85516 0.95778 1.06610
1.84461 1.17508 1.37867 1.69924 0.87081 0.88248 0.88125 0.92484
0.90473 0.82181 0.93286 0.91466 0.74746 0.87590 0.88262 0.91964
0.87710 0.91712 0.90686 0.89438 0.91454 0.87561 0.73076
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.80 10.51 71.24 0.75 -0.05 16
2 C 0.18 3.87 8.34 88.34 0.74 4.60 16
3 N -0.51 -13.92 11.29 -291.98 -3.30 -17.22 16
4 C -0.03 -0.61 6.66 41.26 0.27 -0.33 16
5 C 0.15 2.69 5.84 85.56 0.50 3.19 16
6 N -0.67 -10.48 5.76 -471.57 -2.71 -13.20 16
7 C 0.09 1.34 0.80 4.05 0.00 1.35 16
8 C 0.15 3.77 4.63 86.38 0.40 4.17 16
9 N -0.70 -20.86 5.38 -463.04 -2.49 -23.35 16
10 C 0.53 21.98 7.85 87.66 0.69 22.67 16
11 O -0.57 -28.53 15.86 -3.01 -0.05 -28.58 16
12 C -0.13 -5.54 6.16 71.24 0.44 -5.10 16
13 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16
14 C -0.55 -32.60 9.50 67.95 0.65 -31.95 16
15 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16
16 C 0.01 0.79 5.49 84.86 0.47 1.25 16
17 N -0.91 -57.41 13.22 21.65 0.29 -57.13 16
18 Si 1.00 44.89 29.55 68.60 2.03 46.92 16
19 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16
20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16
21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
22 C -0.12 -1.53 7.33 31.12 0.23 -1.30 16
23 C -0.14 -1.50 7.73 31.12 0.24 -1.26 16
24 C -0.16 -1.69 6.44 31.12 0.20 -1.49 16
25 C -0.06 -0.93 12.08 66.93 0.81 -0.13 16
26 O -0.21 -3.98 10.78 -3.74 -0.04 -4.02 16
27 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16
28 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16
29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16
30 H 0.06 1.45 6.97 -2.39 -0.02 1.44 16
31 H 0.08 0.91 7.54 -2.39 -0.02 0.89 16
32 H 0.36 3.93 8.51 -89.69 -0.76 3.17 16
33 H 0.05 1.41 7.40 -2.39 -0.02 1.39 16
34 H 0.07 1.73 7.36 -2.39 -0.02 1.71 16
35 H 0.42 10.96 8.10 -92.71 -0.75 10.21 16
36 H 0.11 4.25 8.14 -2.39 -0.02 4.23 16
37 H 0.10 4.19 8.14 -2.40 -0.02 4.17 16
38 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16
39 H 0.10 0.90 7.95 -2.39 -0.02 0.88 16
40 H 0.06 1.00 8.10 -2.38 -0.02 0.98 16
41 H 0.07 1.01 7.67 -2.39 -0.02 0.99 16
42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16
43 H 0.07 0.85 8.10 -2.39 -0.02 0.83 16
44 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16
45 H 0.25 1.16 8.06 -2.91 -0.02 1.14 16
Total: -1.00 -85.12 391.95 -1.55 -86.67
By element:
Atomic # 1 Polarization: 24.58 SS G_CDS: -0.49 Total: 24.09 kcal
Atomic # 6 Polarization: -10.75 SS G_CDS: 6.38 Total: -4.37 kcal
Atomic # 7 Polarization: -102.68 SS G_CDS: -8.22 Total: -110.90 kcal
Atomic # 8 Polarization: -32.51 SS G_CDS: -0.09 Total: -32.60 kcal
Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal
Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal
Total: -85.12 -1.55 -86.67 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484625480.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.113 kcal
(2) G-P(sol) polarization free energy of solvation -85.116 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.552 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.668 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.555 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds