Wall clock time and date at job start Tue Mar 31 2020 23:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50690 * 109.47235 * 2 1 4 4 N 1.29431 * 124.80778 * 90.02821 * 3 2 1 5 5 C 1.30943 * 117.36826 * 179.69060 * 4 3 2 6 6 C 1.50698 * 122.90932 * 180.34520 * 5 4 3 7 7 C 1.35672 * 114.18819 * 0.51283 * 5 4 3 8 8 C 1.46682 * 126.13080 * 179.78944 * 7 5 4 9 9 O 1.21687 * 119.99739 * 324.50316 * 8 7 5 10 10 N 1.34771 * 119.99992 * 144.50972 * 8 7 5 11 11 C 1.47155 * 120.97987 * 354.24501 * 10 8 7 12 12 C 1.53299 * 108.38037 * 230.26442 * 11 10 8 13 13 O 1.42963 * 109.22230 * 307.69461 * 12 11 10 14 14 C 1.42959 * 114.16162 * 62.59082 * 13 12 11 15 15 H 1.09001 * 109.52181 * 57.33681 * 14 13 12 16 16 C 1.53010 * 109.51206 * 177.44269 * 14 13 12 17 17 N 1.46496 * 109.46507 * 299.99533 * 16 14 13 18 18 C 1.36943 * 119.99694 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99737 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99873 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00235 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47113 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46932 * 119.99533 * 22 20 18 25 25 H 1.48498 * 109.46980 * 239.99457 * 22 20 18 26 26 C 1.47153 * 120.98330 * 173.96875 * 10 8 7 27 27 S 1.70954 * 124.80534 * 269.99606 * 3 2 1 28 28 H 1.09009 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46945 * 299.99782 * 1 2 3 30 30 H 1.08996 * 109.47005 * 60.00044 * 1 2 3 31 31 H 1.09004 * 109.47090 * 239.99418 * 2 1 3 32 32 H 1.09005 * 109.46765 * 120.00057 * 2 1 3 33 33 H 1.08995 * 109.46783 * 270.18848 * 6 5 4 34 34 H 1.08998 * 109.47029 * 30.18733 * 6 5 4 35 35 H 1.09005 * 109.47319 * 150.18608 * 6 5 4 36 36 H 1.08995 * 109.68457 * 349.98860 * 11 10 8 37 37 H 1.08997 * 109.67863 * 110.50652 * 11 10 8 38 38 H 1.08993 * 109.51245 * 67.62721 * 12 11 10 39 39 H 1.09000 * 109.50949 * 187.77774 * 12 11 10 40 40 H 1.08996 * 109.46841 * 59.99271 * 16 14 13 41 41 H 1.08997 * 109.46964 * 179.97438 * 16 14 13 42 42 H 0.97000 * 120.00767 * 0.02562 * 17 16 14 43 43 H 0.96997 * 119.99749 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.67783 * 249.46058 * 26 10 8 45 45 H 1.09007 * 109.67707 * 10.00850 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2791 2.1171 1.0627 5 6 2.7178 3.3392 0.8932 6 6 3.0515 4.2560 2.0417 7 6 2.8425 3.7098 -0.4060 8 6 3.3040 5.0143 -0.8927 9 8 3.0184 6.0273 -0.2820 10 7 4.0443 5.0908 -2.0163 11 6 4.5079 3.8742 -2.7023 12 6 6.0140 4.0064 -2.9558 13 8 6.2727 5.2465 -3.6183 14 6 5.9187 6.4025 -2.8554 15 1 6.4510 6.3883 -1.9043 16 6 6.2971 7.6643 -3.6339 17 7 7.7404 7.6686 -3.8848 18 6 8.3131 8.7069 -4.5699 19 1 7.7007 9.5222 -4.9254 20 6 9.6807 8.7108 -4.8081 21 7 10.4270 7.7168 -4.3752 22 14 10.4618 10.1268 -5.7432 23 1 9.4140 11.1098 -6.1187 24 1 11.4762 10.7879 -4.8835 25 1 11.1160 9.6079 -6.9712 26 6 4.4078 6.3932 -2.5967 27 16 2.3577 2.3406 -1.4037 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.1640 4.8222 2.3242 34 1 3.3910 3.6645 2.8919 35 1 3.8408 4.9444 1.7396 36 1 4.3161 3.0035 -2.0753 37 1 3.9834 3.7657 -3.6516 38 1 6.5466 3.9833 -2.0051 39 1 6.3513 3.1813 -3.5831 40 1 5.7631 7.6787 -4.5840 41 1 6.0265 8.5452 -3.0518 42 1 8.2905 6.9361 -3.5658 43 1 11.3826 7.7198 -4.5413 44 1 3.8736 6.5386 -3.5357 45 1 4.1497 7.1906 -1.8997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484690357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:01 Heat of formation + Delta-G solvation = -18.240393 kcal Electronic energy + Delta-G solvation = -27160.064188 eV Core-core repulsion = 23305.116310 eV Total energy + Delta-G solvation = -3854.947877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84067 -39.94660 -38.26845 -35.15212 -34.75414 -34.42907 -32.31995 -31.27256 -30.26334 -29.14415 -27.78310 -25.97433 -25.49468 -23.59583 -22.86554 -22.32706 -21.35205 -20.67614 -18.87977 -18.42992 -17.30441 -17.02931 -16.59277 -16.12587 -15.93230 -15.31288 -15.14915 -14.89694 -14.66377 -14.50404 -14.33880 -14.05522 -13.71382 -13.54437 -13.19660 -13.17832 -12.73972 -12.69120 -12.61521 -12.39856 -12.23860 -12.10274 -11.74498 -11.68034 -11.65392 -11.05082 -10.91699 -10.80849 -10.59205 -10.30034 -10.03770 -10.02044 -9.91611 -9.70093 -9.63233 -9.05417 -8.86698 -8.63560 -6.88667 -5.72435 -3.01164 -0.07022 0.75733 1.18235 2.13915 2.56102 2.84870 3.46015 3.51301 3.53115 3.53795 3.89347 4.21812 4.34491 4.56578 4.59279 4.65807 4.68056 4.74016 4.79829 5.00838 5.02417 5.07381 5.24514 5.28362 5.37983 5.39300 5.42502 5.43893 5.57827 5.59641 5.60344 5.65343 5.66222 5.82075 5.90769 5.98246 6.19234 6.26950 6.54513 6.67850 7.03380 7.29062 7.41398 7.72941 7.81798 8.45646 9.57511 10.14512 10.50474 11.50397 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026994 B = 0.002290 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.007727 B =12223.748042 C =12631.365745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.056 3.944 4 N -0.475 5.475 5 C 0.146 3.854 6 C -0.082 4.082 7 C -0.299 4.299 8 C 0.599 3.401 9 O -0.519 6.519 10 N -0.607 5.607 11 C 0.061 3.939 12 C 0.050 3.950 13 O -0.354 6.354 14 C 0.073 3.927 15 H 0.064 0.936 16 C 0.164 3.836 17 N -0.726 5.726 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.087 3.913 27 S 0.175 5.825 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.029 0.971 41 H 0.037 0.963 42 H 0.388 0.612 43 H 0.254 0.746 44 H 0.081 0.919 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.696 -18.458 8.913 29.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.220 4.220 4 N -0.190 5.190 5 C 0.009 3.991 6 C -0.141 4.141 7 C -0.423 4.423 8 C 0.385 3.615 9 O -0.396 6.396 10 N -0.341 5.341 11 C -0.063 4.063 12 C -0.028 4.028 13 O -0.272 6.272 14 C 0.014 3.986 15 H 0.082 0.918 16 C 0.036 3.964 17 N -0.370 5.370 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.035 4.035 27 S 0.434 5.566 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.222 0.778 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.924 -18.209 8.356 28.969 hybrid contribution 0.733 0.846 0.447 1.205 sum -20.191 -17.363 8.802 28.047 Atomic orbital electron populations 1.21785 0.93121 1.02882 1.02867 1.20320 0.96996 0.87112 1.04731 1.27567 1.00643 1.01951 0.91824 1.66077 1.15597 1.05842 1.31435 1.20605 0.94442 0.90623 0.93448 1.20485 1.03156 0.96679 0.93745 1.25385 1.18974 1.00613 0.97306 1.16715 0.78116 0.86516 0.80110 1.90837 1.57407 1.35322 1.56061 1.47994 1.52257 1.08164 1.25649 1.22830 0.97750 0.87327 0.98397 1.22877 0.92289 0.88897 0.98772 1.88178 1.84309 1.12489 1.42217 1.22817 0.92021 0.87765 0.95954 0.91754 1.20623 0.88233 0.91113 0.96471 1.42216 1.01033 1.26123 1.67660 1.19273 0.91051 0.99235 1.27393 0.91069 1.24753 0.96328 0.98310 1.01669 1.69687 1.05107 1.31954 1.51254 0.86103 0.79185 0.81583 0.79234 1.20541 1.21914 1.21891 1.22427 0.96716 0.84669 0.99677 1.84038 1.58133 1.03540 1.10926 0.91043 0.91815 0.92259 0.89224 0.88373 0.89590 0.90387 0.89885 0.89202 0.89833 0.92708 0.87476 0.95327 0.94594 0.77818 0.93616 0.90037 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 37.16 0.37 -0.32 16 2 C -0.05 -0.27 6.51 -27.89 -0.18 -0.45 16 3 C 0.06 0.48 6.64 -13.29 -0.09 0.39 16 4 N -0.47 -5.26 10.50 -7.70 -0.08 -5.34 16 5 C 0.15 1.74 6.79 -83.89 -0.57 1.17 16 6 C -0.08 -0.88 9.57 36.00 0.34 -0.53 16 7 C -0.30 -3.59 5.58 -37.09 -0.21 -3.80 16 8 C 0.60 8.44 7.21 -12.85 -0.09 8.35 16 9 O -0.52 -8.64 15.12 5.20 0.08 -8.56 16 10 N -0.61 -8.05 3.02 -173.82 -0.52 -8.57 16 11 C 0.06 0.66 5.70 -3.53 -0.02 0.64 16 12 C 0.05 0.63 6.98 37.31 0.26 0.89 16 13 O -0.35 -6.16 10.13 -35.23 -0.36 -6.52 16 14 C 0.07 1.25 2.86 -26.57 -0.08 1.18 16 15 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 16 C 0.16 3.35 5.96 -4.04 -0.02 3.33 16 17 N -0.73 -18.95 5.50 -59.91 -0.33 -19.27 16 18 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 22 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 C 0.09 1.25 5.94 -3.53 -0.02 1.23 16 27 S 0.18 1.50 19.85 -107.50 -2.13 -0.63 16 28 H 0.07 0.21 8.14 -51.92 -0.42 -0.21 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.97 7.08 -51.93 -0.37 0.60 16 36 H 0.09 0.84 4.53 -34.43 -0.16 0.68 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.39 10.78 7.54 -40.82 -0.31 10.47 16 43 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 1.54 7.06 -51.93 -0.37 1.18 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -34.74 379.53 -9.14 -43.88 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.66 Total: 4.99 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -0.55 Total: 4.61 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.21 Total: -61.17 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.28 Total: -15.09 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.13 Total: -0.63 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.74 -9.14 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484690357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.640 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds