Wall clock time and date at job start Tue Mar 31 2020 23:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50690 * 109.47235 * 2 1 4 4 N 1.29431 * 124.80778 * 90.02821 * 3 2 1 5 5 C 1.30943 * 117.36826 * 179.69060 * 4 3 2 6 6 C 1.50698 * 122.90932 * 180.34520 * 5 4 3 7 7 C 1.35672 * 114.18819 * 0.51283 * 5 4 3 8 8 C 1.46682 * 126.13080 * 179.78944 * 7 5 4 9 9 O 1.21687 * 119.99739 * 324.50316 * 8 7 5 10 10 N 1.34771 * 119.99992 * 144.50972 * 8 7 5 11 11 C 1.47155 * 120.97987 * 354.24501 * 10 8 7 12 12 C 1.53299 * 108.38037 * 230.26442 * 11 10 8 13 13 O 1.42963 * 109.22230 * 307.69461 * 12 11 10 14 14 C 1.42959 * 114.16162 * 62.59082 * 13 12 11 15 15 H 1.09001 * 109.52181 * 57.33681 * 14 13 12 16 16 C 1.53010 * 109.51206 * 177.44269 * 14 13 12 17 17 N 1.46496 * 109.46507 * 299.99533 * 16 14 13 18 18 C 1.36943 * 119.99694 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99737 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99873 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00235 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47113 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46932 * 119.99533 * 22 20 18 25 25 H 1.48498 * 109.46980 * 239.99457 * 22 20 18 26 26 C 1.47153 * 120.98330 * 173.96875 * 10 8 7 27 27 S 1.70954 * 124.80534 * 269.99606 * 3 2 1 28 28 H 1.09009 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46945 * 299.99782 * 1 2 3 30 30 H 1.08996 * 109.47005 * 60.00044 * 1 2 3 31 31 H 1.09004 * 109.47090 * 239.99418 * 2 1 3 32 32 H 1.09005 * 109.46765 * 120.00057 * 2 1 3 33 33 H 1.08995 * 109.46783 * 270.18848 * 6 5 4 34 34 H 1.08998 * 109.47029 * 30.18733 * 6 5 4 35 35 H 1.09005 * 109.47319 * 150.18608 * 6 5 4 36 36 H 1.08995 * 109.68457 * 349.98860 * 11 10 8 37 37 H 1.08997 * 109.67863 * 110.50652 * 11 10 8 38 38 H 1.08993 * 109.51245 * 67.62721 * 12 11 10 39 39 H 1.09000 * 109.50949 * 187.77774 * 12 11 10 40 40 H 1.08996 * 109.46841 * 59.99271 * 16 14 13 41 41 H 1.08997 * 109.46964 * 179.97438 * 16 14 13 42 42 H 0.97000 * 120.00767 * 0.02562 * 17 16 14 43 43 H 0.96997 * 119.99749 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.67783 * 249.46058 * 26 10 8 45 45 H 1.09007 * 109.67707 * 10.00850 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2791 2.1171 1.0627 5 6 2.7178 3.3392 0.8932 6 6 3.0515 4.2560 2.0417 7 6 2.8425 3.7098 -0.4060 8 6 3.3040 5.0143 -0.8927 9 8 3.0184 6.0273 -0.2820 10 7 4.0443 5.0908 -2.0163 11 6 4.5079 3.8742 -2.7023 12 6 6.0140 4.0064 -2.9558 13 8 6.2727 5.2465 -3.6183 14 6 5.9187 6.4025 -2.8554 15 1 6.4510 6.3883 -1.9043 16 6 6.2971 7.6643 -3.6339 17 7 7.7404 7.6686 -3.8848 18 6 8.3131 8.7069 -4.5699 19 1 7.7007 9.5222 -4.9254 20 6 9.6807 8.7108 -4.8081 21 7 10.4270 7.7168 -4.3752 22 14 10.4618 10.1268 -5.7432 23 1 9.4140 11.1098 -6.1187 24 1 11.4762 10.7879 -4.8835 25 1 11.1160 9.6079 -6.9712 26 6 4.4078 6.3932 -2.5967 27 16 2.3577 2.3406 -1.4037 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.1640 4.8222 2.3242 34 1 3.3910 3.6645 2.8919 35 1 3.8408 4.9444 1.7396 36 1 4.3161 3.0035 -2.0753 37 1 3.9834 3.7657 -3.6516 38 1 6.5466 3.9833 -2.0051 39 1 6.3513 3.1813 -3.5831 40 1 5.7631 7.6787 -4.5840 41 1 6.0265 8.5452 -3.0518 42 1 8.2905 6.9361 -3.5658 43 1 11.3826 7.7198 -4.5413 44 1 3.8736 6.5386 -3.5357 45 1 4.1497 7.1906 -1.8997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484690357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:00 Heat of formation + Delta-G solvation = -42.750704 kcal Electronic energy + Delta-G solvation = -27161.127035 eV Core-core repulsion = 23305.116310 eV Total energy + Delta-G solvation = -3856.010724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81656 -40.89754 -39.45220 -36.71658 -35.87582 -35.31426 -33.97777 -32.21486 -31.77671 -30.11482 -29.05757 -27.13304 -26.43588 -25.05852 -24.24810 -22.95016 -22.69303 -21.82642 -19.82232 -19.29915 -19.18641 -18.11851 -17.78619 -17.25526 -16.88779 -16.76440 -16.17693 -16.04002 -15.74199 -15.67620 -15.35627 -15.05458 -14.91821 -14.62107 -14.51758 -14.30274 -14.09031 -13.88743 -13.62109 -13.46020 -13.15627 -12.90723 -12.82244 -12.69012 -12.59934 -12.51848 -12.30774 -12.08883 -12.03607 -11.92145 -11.72768 -11.36219 -11.20555 -10.97211 -10.78493 -10.47081 -9.84781 -9.71640 -9.00791 -7.93988 -5.23508 -0.86268 0.00391 0.42257 1.26748 1.47873 1.49448 1.53569 1.59758 1.87102 2.56366 2.68457 2.86745 3.26924 3.39902 3.50265 3.74140 3.78245 3.86970 3.91806 3.94477 4.08362 4.20847 4.22108 4.28033 4.37391 4.44766 4.48760 4.56960 4.58492 4.66757 4.69519 4.74676 4.82149 4.92212 4.98707 5.04194 5.06660 5.10775 5.14765 5.32389 5.49172 6.00679 6.16271 6.27517 6.52035 6.75926 7.33712 8.07514 8.32120 9.29939 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026994 B = 0.002290 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.007727 B =12223.748042 C =12631.365745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C 0.062 3.938 4 N -0.499 5.499 5 C 0.141 3.859 6 C -0.080 4.080 7 C -0.335 4.335 8 C 0.599 3.401 9 O -0.555 6.555 10 N -0.608 5.608 11 C 0.066 3.934 12 C 0.044 3.956 13 O -0.382 6.382 14 C 0.086 3.914 15 H 0.048 0.952 16 C 0.161 3.839 17 N -0.740 5.740 18 C -0.245 4.245 19 H 0.079 0.921 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.098 3.902 27 S 0.229 5.771 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.048 0.952 39 H 0.134 0.866 40 H 0.034 0.966 41 H 0.045 0.955 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.096 0.904 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.245 -20.143 7.981 31.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.213 4.213 4 N -0.214 5.214 5 C 0.002 3.998 6 C -0.139 4.139 7 C -0.458 4.458 8 C 0.387 3.613 9 O -0.435 6.435 10 N -0.341 5.341 11 C -0.057 4.057 12 C -0.034 4.034 13 O -0.300 6.300 14 C 0.028 3.972 15 H 0.066 0.934 16 C 0.034 3.966 17 N -0.383 5.383 18 C -0.376 4.376 19 H 0.097 0.903 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.221 1.221 25 H -0.220 1.220 26 C -0.025 4.025 27 S 0.488 5.512 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.135 0.865 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.066 0.934 39 H 0.151 0.849 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.114 0.886 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.521 -19.908 7.406 30.957 hybrid contribution 1.127 1.235 0.763 1.838 sum -21.394 -18.673 8.169 29.548 Atomic orbital electron populations 1.21792 0.92460 1.04077 1.02163 1.20579 0.97387 0.85056 1.06349 1.28277 0.98514 1.02993 0.91511 1.66147 1.17006 1.05707 1.32552 1.20767 0.94160 0.91166 0.93673 1.20449 1.02664 0.96592 0.94193 1.25264 1.20951 1.01196 0.98390 1.16991 0.77669 0.87002 0.79686 1.90806 1.58781 1.36822 1.57049 1.48047 1.52005 1.08413 1.25661 1.22949 0.96426 0.86917 0.99430 1.23154 0.93709 0.87663 0.98831 1.88118 1.84948 1.13802 1.43164 1.22492 0.93626 0.86813 0.94316 0.93431 1.20771 0.85295 0.93370 0.97181 1.42410 1.03211 1.25209 1.67469 1.19707 0.91515 0.99757 1.26649 0.90281 1.25632 0.97024 1.01100 1.03313 1.69850 1.05070 1.34075 1.53056 0.85016 0.78220 0.78672 0.77486 1.18851 1.22065 1.21979 1.22202 0.94649 0.85449 1.00233 1.83724 1.57014 1.01066 1.09386 0.88946 0.93365 0.92131 0.86534 0.87820 0.89564 0.89132 0.91427 0.87434 0.87834 0.93391 0.84860 0.94821 0.93763 0.79297 0.94034 0.88609 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 71.98 0.71 -0.24 16 2 C -0.05 -0.40 6.51 29.84 0.19 -0.20 16 3 C 0.06 0.93 6.64 88.46 0.59 1.51 16 4 N -0.50 -10.42 10.50 -178.29 -1.87 -12.29 16 5 C 0.14 3.29 6.79 42.10 0.29 3.57 16 6 C -0.08 -1.76 9.57 71.24 0.68 -1.08 16 7 C -0.33 -7.75 5.58 23.88 0.13 -7.62 16 8 C 0.60 16.78 7.21 86.45 0.62 17.40 16 9 O -0.55 -18.95 15.12 -4.31 -0.07 -19.02 16 10 N -0.61 -15.64 3.02 -822.06 -2.48 -18.13 16 11 C 0.07 1.30 5.70 86.35 0.49 1.79 16 12 C 0.04 1.06 6.98 72.08 0.50 1.56 16 13 O -0.38 -13.17 10.13 -148.98 -1.51 -14.68 16 14 C 0.09 2.98 2.86 30.70 0.09 3.07 16 15 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 16 C 0.16 6.61 5.96 86.38 0.51 7.12 16 17 N -0.74 -39.23 5.50 -343.45 -1.89 -41.11 16 18 C -0.24 -14.01 9.99 84.03 0.84 -13.17 16 19 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 20 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 21 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 22 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 23 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 C 0.10 2.76 5.94 86.35 0.51 3.27 16 27 S 0.23 3.34 19.85 -56.49 -1.12 2.22 16 28 H 0.09 0.24 8.14 -2.38 -0.02 0.23 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 32 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.67 7.08 -2.38 -0.02 1.66 16 36 H 0.11 1.74 4.53 -13.52 -0.06 1.68 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.38 21.45 7.54 -92.71 -0.70 20.75 16 43 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.10 2.93 7.06 -2.38 -0.02 2.91 16 Total: -1.00 -76.03 379.53 0.27 -75.76 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.26 Total: 26.01 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.64 Total: 12.84 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -5.96 Total: -132.09 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.57 Total: -33.69 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.12 Total: 2.22 kcal Total: -76.03 0.27 -75.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484690357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.007 kcal (2) G-P(sol) polarization free energy of solvation -76.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds