Wall clock time and date at job start Tue Mar 31 2020 23:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30253 * 125.62145 * 2 1 4 4 C 1.34476 * 108.70344 * 179.77422 * 3 2 1 5 5 C 1.34329 * 107.66644 * 0.38846 * 4 3 2 6 6 C 1.50701 * 126.44215 * 179.87793 * 5 4 3 7 7 N 1.46893 * 109.47276 * 89.71210 * 6 5 4 8 8 C 1.46899 * 111.00287 * 179.97438 * 7 6 5 9 9 H 1.08999 * 112.90661 * 336.25759 * 8 7 6 10 10 C 1.53781 * 113.61474 * 107.50463 * 8 7 6 11 11 C 1.54049 * 87.08031 * 139.97870 * 10 8 7 12 12 H 1.09000 * 113.61076 * 89.06984 * 11 10 8 13 13 C 1.52990 * 113.70090 * 220.05426 * 11 10 8 14 14 N 1.46497 * 109.47171 * 272.42414 * 13 11 10 15 15 C 1.34777 * 120.00242 * 179.97438 * 14 13 11 16 16 O 1.21281 * 119.99992 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99937 * 179.97438 * 15 14 13 18 18 S 1.81005 * 109.46724 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99640 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99731 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99910 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99718 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00038 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47233 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47241 * 120.00125 * 23 21 19 26 26 H 1.48501 * 109.47242 * 239.99781 * 23 21 19 27 27 C 1.53781 * 113.61699 * 205.00285 * 8 7 6 28 28 O 1.33967 * 125.62083 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47663 * 269.97943 * 1 2 3 30 30 H 1.09003 * 109.46671 * 29.98179 * 1 2 3 31 31 H 1.08999 * 109.46800 * 149.97592 * 1 2 3 32 32 H 1.08002 * 126.16551 * 180.26874 * 4 3 2 33 33 H 1.09010 * 109.47264 * 329.71190 * 6 5 4 34 34 H 1.09002 * 109.47126 * 209.71969 * 6 5 4 35 35 H 1.00905 * 111.00118 * 56.04967 * 7 6 5 36 36 H 1.09005 * 113.61471 * 254.53452 * 10 8 7 37 37 H 1.09003 * 113.61469 * 25.43231 * 10 8 7 38 38 H 1.09007 * 109.47036 * 32.41747 * 13 11 10 39 39 H 1.08994 * 109.47734 * 152.42153 * 13 11 10 40 40 H 0.97003 * 120.00176 * 359.97438 * 14 13 11 41 41 H 1.08994 * 109.47250 * 300.00216 * 17 15 14 42 42 H 1.09000 * 109.46854 * 60.00842 * 17 15 14 43 43 H 0.97002 * 120.00039 * 179.97438 * 22 21 19 44 44 H 1.09002 * 113.61445 * 334.56913 * 27 8 7 45 45 H 1.09002 * 113.61408 * 105.38644 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0050 5 6 3.5697 -0.6757 -0.0005 6 6 4.7937 -1.5549 -0.0005 7 7 5.1912 -1.8407 1.3845 8 6 6.3835 -2.6980 1.4238 9 1 6.5118 -3.2882 0.5164 10 6 7.6587 -1.9598 1.8639 11 6 8.0159 -3.2220 2.6716 12 1 8.5896 -3.9552 2.1047 13 6 8.6227 -2.9227 4.0438 14 7 10.0738 -2.7699 3.9132 15 6 10.8236 -2.5000 5.0002 16 8 10.2970 -2.3840 6.0865 17 6 12.3164 -2.3433 4.8659 18 16 13.0343 -1.9891 6.4893 19 6 14.7354 -1.8572 6.0494 20 1 15.0393 -1.9907 5.0217 21 6 15.6850 -1.5828 7.0238 22 7 15.3146 -1.4206 8.2765 23 14 17.4884 -1.4437 6.5576 24 1 17.6407 -1.6656 5.0972 25 1 17.9869 -0.0890 6.9065 26 1 18.2715 -2.4651 7.2984 27 6 6.5081 -3.5211 2.7168 28 8 2.2872 -1.0890 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 4.4156 1.3162 0.0104 33 1 5.6081 -1.0440 -0.5142 34 1 4.5696 -2.4896 -0.5145 35 1 4.4303 -2.2564 1.9007 36 1 8.3491 -1.7550 1.0456 37 1 7.4647 -1.0848 2.4843 38 1 8.1943 -2.0009 4.4373 39 1 8.4038 -3.7449 4.7251 40 1 10.4951 -2.8630 3.0444 41 1 12.7446 -3.2654 4.4730 42 1 12.5356 -1.5215 4.1842 43 1 15.9782 -1.2291 8.9576 44 1 5.9995 -3.0730 3.5704 45 1 6.2682 -4.5765 2.5874 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488714310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:42 Heat of formation + Delta-G solvation = 1.830911 kcal Electronic energy + Delta-G solvation = -24926.559672 eV Core-core repulsion = 21072.482152 eV Total energy + Delta-G solvation = -3854.077520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.73487 -39.98965 -38.77891 -35.77156 -35.16099 -33.97951 -32.41704 -32.32599 -30.00533 -28.92204 -26.83210 -26.08146 -25.45734 -24.83031 -22.70416 -21.92987 -21.41780 -20.51941 -19.67458 -17.83297 -17.41618 -17.26321 -16.62515 -16.24340 -16.15802 -15.53341 -15.27553 -15.19815 -14.79586 -14.74845 -14.40151 -13.91072 -13.81469 -13.61680 -13.35882 -13.24870 -13.01857 -12.95392 -12.74577 -12.57614 -12.43334 -12.01186 -11.70809 -11.66518 -11.23571 -11.07031 -11.06065 -11.00546 -10.85555 -10.72111 -10.59087 -9.78991 -9.35830 -9.21694 -9.06585 -8.97231 -8.82060 -8.21179 -6.48299 -6.20603 -3.90873 0.96737 2.15626 2.28876 3.06262 3.14224 3.22305 3.29207 3.33987 3.57908 3.71189 3.75987 4.07903 4.21543 4.25656 4.32043 4.44495 4.48350 4.58354 4.60982 4.82421 4.83684 4.93444 5.01527 5.08908 5.09245 5.14670 5.21671 5.37894 5.43342 5.45697 5.54185 5.56999 5.61575 5.67361 5.86158 5.87712 5.92940 5.93215 6.05184 6.16154 6.49207 6.67787 6.73070 7.31875 7.61021 7.75553 8.36632 8.65867 9.24857 10.86931 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027449 B = 0.001400 C = 0.001383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.810891 B =19999.861279 C =20236.032246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.189 3.811 3 N -0.486 5.486 4 C -0.014 4.014 5 C -0.053 4.053 6 C 0.147 3.853 7 N -0.673 5.673 8 C 0.057 3.943 9 H 0.077 0.923 10 C -0.120 4.120 11 C -0.122 4.122 12 H 0.096 0.904 13 C 0.134 3.866 14 N -0.738 5.738 15 C 0.530 3.470 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.131 4.131 28 O -0.205 6.205 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.185 0.815 33 H 0.107 0.893 34 H 0.050 0.950 35 H 0.346 0.654 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.094 0.906 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.364 -2.989 -21.783 35.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 N -0.216 5.216 4 C -0.154 4.154 5 C -0.106 4.106 6 C 0.018 3.982 7 N -0.305 5.305 8 C -0.053 4.053 9 H 0.095 0.905 10 C -0.158 4.158 11 C -0.141 4.141 12 H 0.114 0.886 13 C 0.010 3.990 14 N -0.392 5.392 15 C 0.316 3.684 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.170 4.170 28 O -0.092 6.092 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.202 0.798 33 H 0.125 0.875 34 H 0.068 0.932 35 H 0.165 0.835 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -28.106 -1.615 -19.711 34.367 hybrid contribution 1.940 -1.563 -2.233 3.346 sum -26.166 -3.178 -21.945 34.298 Atomic orbital electron populations 1.20273 0.81285 1.05115 1.04825 1.26336 0.96484 0.78665 1.00269 1.70488 1.02250 1.30284 1.18542 1.23102 0.94958 0.93002 1.04317 1.23262 0.83190 0.95612 1.08527 1.20336 0.89803 0.96566 0.91450 1.60699 1.08367 1.49651 1.11759 1.23072 0.90853 0.93705 0.97635 0.90508 1.23238 0.95408 0.97406 0.99723 1.22669 0.95885 0.99039 0.96555 0.88555 1.21231 0.80375 1.01760 0.95670 1.45987 1.07325 1.75007 1.10898 1.20308 0.88828 0.75454 0.83783 1.90702 1.73832 1.48427 1.26359 1.23530 0.93847 1.04848 1.08165 1.85409 1.03790 1.92442 1.01843 1.22914 0.92054 1.56211 0.97129 0.90891 1.24991 0.99525 0.94609 0.94461 1.70032 1.34490 1.45262 1.00512 0.86118 0.82834 0.77937 0.78608 1.19627 1.20571 1.20579 1.23196 0.95943 1.00014 0.97845 1.84364 1.16775 1.37967 1.70101 0.88799 0.88039 0.89393 0.79784 0.87461 0.93225 0.83462 0.91447 0.88708 0.91383 0.91677 0.76909 0.89290 0.89252 0.92248 0.88800 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 36.00 0.38 0.17 16 2 C 0.19 1.55 8.34 -12.95 -0.11 1.44 16 3 N -0.49 -4.98 11.29 -11.10 -0.13 -5.10 16 4 C -0.01 -0.13 11.80 -17.77 -0.21 -0.34 16 5 C -0.05 -0.43 6.90 -35.69 -0.25 -0.67 16 6 C 0.15 0.86 6.08 -4.98 -0.03 0.82 16 7 N -0.67 -4.32 6.55 -107.13 -0.70 -5.02 16 8 C 0.06 0.33 4.14 -66.90 -0.28 0.05 16 9 H 0.08 0.38 7.87 -51.93 -0.41 -0.03 16 10 C -0.12 -0.85 7.44 -25.78 -0.19 -1.04 16 11 C -0.12 -0.90 3.76 -89.67 -0.34 -1.23 16 12 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 13 C 0.13 1.50 5.52 -4.05 -0.02 1.48 16 14 N -0.74 -9.66 5.56 -60.30 -0.33 -10.00 16 15 C 0.53 9.95 7.85 -10.98 -0.09 9.87 16 16 O -0.52 -11.96 15.86 5.56 0.09 -11.87 16 17 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.31 9.50 30.94 0.29 -15.01 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 23 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C -0.13 -0.82 7.20 -25.92 -0.19 -1.01 16 28 O -0.20 -1.78 10.77 5.38 0.06 -1.72 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.11 0.52 8.14 -51.92 -0.42 0.09 16 34 H 0.05 0.25 8.13 -51.93 -0.42 -0.17 16 35 H 0.35 2.20 8.54 -39.29 -0.34 1.87 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 38 H 0.07 0.85 7.85 -51.93 -0.41 0.45 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.40 4.00 8.47 -40.82 -0.35 3.65 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -36.93 397.86 -9.37 -46.29 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.95 Total: 0.79 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.90 Total: -6.35 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.43 Total: -45.68 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.15 Total: -13.59 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.93 -9.37 -46.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488714310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.123 kcal (2) G-P(sol) polarization free energy of solvation -36.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds