Wall clock time and date at job start Tue Mar 31 2020 23:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30253 * 125.62145 * 2 1 4 4 C 1.34476 * 108.70344 * 179.77422 * 3 2 1 5 5 C 1.34329 * 107.66644 * 0.38846 * 4 3 2 6 6 C 1.50701 * 126.44215 * 179.87793 * 5 4 3 7 7 N 1.46893 * 109.47276 * 89.71210 * 6 5 4 8 8 C 1.46899 * 111.00287 * 179.97438 * 7 6 5 9 9 H 1.08999 * 112.90661 * 336.25759 * 8 7 6 10 10 C 1.53781 * 113.61474 * 107.50463 * 8 7 6 11 11 C 1.54049 * 87.08031 * 139.97870 * 10 8 7 12 12 H 1.09000 * 113.61076 * 89.06984 * 11 10 8 13 13 C 1.52990 * 113.70090 * 220.05426 * 11 10 8 14 14 N 1.46497 * 109.47171 * 272.42414 * 13 11 10 15 15 C 1.34777 * 120.00242 * 179.97438 * 14 13 11 16 16 O 1.21281 * 119.99992 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99937 * 179.97438 * 15 14 13 18 18 S 1.81005 * 109.46724 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99640 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99731 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99910 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99718 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00038 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47233 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47241 * 120.00125 * 23 21 19 26 26 H 1.48501 * 109.47242 * 239.99781 * 23 21 19 27 27 C 1.53781 * 113.61699 * 205.00285 * 8 7 6 28 28 O 1.33967 * 125.62083 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47663 * 269.97943 * 1 2 3 30 30 H 1.09003 * 109.46671 * 29.98179 * 1 2 3 31 31 H 1.08999 * 109.46800 * 149.97592 * 1 2 3 32 32 H 1.08002 * 126.16551 * 180.26874 * 4 3 2 33 33 H 1.09010 * 109.47264 * 329.71190 * 6 5 4 34 34 H 1.09002 * 109.47126 * 209.71969 * 6 5 4 35 35 H 1.00905 * 111.00118 * 56.04967 * 7 6 5 36 36 H 1.09005 * 113.61471 * 254.53452 * 10 8 7 37 37 H 1.09003 * 113.61469 * 25.43231 * 10 8 7 38 38 H 1.09007 * 109.47036 * 32.41747 * 13 11 10 39 39 H 1.08994 * 109.47734 * 152.42153 * 13 11 10 40 40 H 0.97003 * 120.00176 * 359.97438 * 14 13 11 41 41 H 1.08994 * 109.47250 * 300.00216 * 17 15 14 42 42 H 1.09000 * 109.46854 * 60.00842 * 17 15 14 43 43 H 0.97002 * 120.00039 * 179.97438 * 22 21 19 44 44 H 1.09002 * 113.61445 * 334.56913 * 27 8 7 45 45 H 1.09002 * 113.61408 * 105.38644 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0050 5 6 3.5697 -0.6757 -0.0005 6 6 4.7937 -1.5549 -0.0005 7 7 5.1912 -1.8407 1.3845 8 6 6.3835 -2.6980 1.4238 9 1 6.5118 -3.2882 0.5164 10 6 7.6587 -1.9598 1.8639 11 6 8.0159 -3.2220 2.6716 12 1 8.5896 -3.9552 2.1047 13 6 8.6227 -2.9227 4.0438 14 7 10.0738 -2.7699 3.9132 15 6 10.8236 -2.5000 5.0002 16 8 10.2970 -2.3840 6.0865 17 6 12.3164 -2.3433 4.8659 18 16 13.0343 -1.9891 6.4893 19 6 14.7354 -1.8572 6.0494 20 1 15.0393 -1.9907 5.0217 21 6 15.6850 -1.5828 7.0238 22 7 15.3146 -1.4206 8.2765 23 14 17.4884 -1.4437 6.5576 24 1 17.6407 -1.6656 5.0972 25 1 17.9869 -0.0890 6.9065 26 1 18.2715 -2.4651 7.2984 27 6 6.5081 -3.5211 2.7168 28 8 2.2872 -1.0890 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 4.4156 1.3162 0.0104 33 1 5.6081 -1.0440 -0.5142 34 1 4.5696 -2.4896 -0.5145 35 1 4.4303 -2.2564 1.9007 36 1 8.3491 -1.7550 1.0456 37 1 7.4647 -1.0848 2.4843 38 1 8.1943 -2.0009 4.4373 39 1 8.4038 -3.7449 4.7251 40 1 10.4951 -2.8630 3.0444 41 1 12.7446 -3.2654 4.4730 42 1 12.5356 -1.5215 4.1842 43 1 15.9782 -1.2291 8.9576 44 1 5.9995 -3.0730 3.5704 45 1 6.2682 -4.5765 2.5874 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488714310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:41 Heat of formation + Delta-G solvation = -27.637312 kcal Electronic energy + Delta-G solvation = -24927.837511 eV Core-core repulsion = 21072.482152 eV Total energy + Delta-G solvation = -3855.355358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.33485 -40.87648 -39.93466 -36.47245 -35.79681 -35.07277 -34.57704 -32.83136 -31.33904 -29.59227 -27.93073 -27.46476 -26.61182 -25.42412 -23.29664 -22.61343 -21.99262 -21.83507 -20.42336 -19.75368 -17.99485 -17.91140 -17.72497 -17.47313 -16.87751 -16.78826 -16.55996 -16.39531 -15.78845 -15.73327 -15.39741 -14.92967 -14.79209 -14.61826 -14.42649 -13.94626 -13.88969 -13.73950 -13.45398 -13.30327 -13.26941 -13.15330 -12.97771 -12.90155 -12.61293 -12.47815 -12.32199 -11.87481 -11.75460 -11.65935 -11.46874 -11.17657 -11.15241 -10.88256 -10.26186 -10.06804 -9.77115 -9.44630 -8.66258 -8.34227 -6.12373 0.38614 1.28267 1.42028 1.48347 1.59297 1.62101 1.63675 1.68238 2.27064 2.33437 3.00153 3.11926 3.24708 3.32951 3.54599 3.70352 3.73759 3.89055 3.94990 4.04553 4.07343 4.16063 4.31081 4.31401 4.43636 4.46912 4.52289 4.62153 4.67054 4.71169 4.74948 4.86231 4.90211 4.96436 4.99389 5.04889 5.14578 5.27212 5.37547 5.38868 5.42746 5.53634 6.03967 6.20705 6.25807 6.55050 6.71405 7.07230 7.28226 8.75380 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027449 B = 0.001400 C = 0.001383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.810891 B =19999.861279 C =20236.032246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.186 3.814 3 N -0.523 5.523 4 C -0.037 4.037 5 C -0.054 4.054 6 C 0.152 3.848 7 N -0.684 5.684 8 C 0.068 3.932 9 H 0.097 0.903 10 C -0.121 4.121 11 C -0.112 4.112 12 H 0.118 0.882 13 C 0.133 3.867 14 N -0.709 5.709 15 C 0.530 3.470 16 O -0.570 6.570 17 C -0.129 4.129 18 S -0.156 6.156 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.274 1.274 27 C -0.128 4.128 28 O -0.213 6.213 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.193 0.807 33 H 0.118 0.882 34 H 0.063 0.937 35 H 0.346 0.654 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.082 0.918 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.244 -4.161 -24.777 37.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.021 4.021 3 N -0.253 5.253 4 C -0.176 4.176 5 C -0.107 4.107 6 C 0.023 3.977 7 N -0.316 5.316 8 C -0.041 4.041 9 H 0.115 0.885 10 C -0.160 4.160 11 C -0.132 4.132 12 H 0.136 0.864 13 C 0.009 3.991 14 N -0.363 5.363 15 C 0.316 3.684 16 O -0.449 6.449 17 C -0.280 4.280 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.199 1.199 27 C -0.167 4.167 28 O -0.101 6.101 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.210 0.790 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.165 0.835 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.254 0.746 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -28.004 -2.798 -22.774 36.204 hybrid contribution 1.755 -1.200 -1.360 2.524 sum -26.249 -3.999 -24.135 35.881 Atomic orbital electron populations 1.20527 0.78428 1.06470 1.06039 1.27235 0.97949 0.78144 0.98775 1.70475 1.03099 1.31571 1.20187 1.23371 0.95095 0.93877 1.05232 1.23639 0.83630 0.95647 1.07738 1.20421 0.89129 0.96849 0.91259 1.60652 1.08629 1.50096 1.12232 1.23010 0.89890 0.93168 0.98051 0.88520 1.23207 0.96592 0.96505 0.99666 1.22651 0.96531 0.99835 0.94140 0.86443 1.21368 0.78856 1.00642 0.98213 1.45743 1.07947 1.72398 1.10227 1.20110 0.88483 0.75501 0.84294 1.90690 1.74420 1.51196 1.28575 1.23374 0.94608 1.06523 1.03502 1.85611 1.05388 1.93060 1.08779 1.23244 0.92129 1.56200 0.97728 0.89839 1.26133 1.04981 0.93822 0.94204 1.70197 1.36379 1.46367 1.01933 0.84895 0.75876 0.78057 0.79048 1.17933 1.19995 1.19927 1.23170 0.94720 1.00953 0.97834 1.84377 1.17148 1.38290 1.70251 0.87500 0.87272 0.87395 0.78999 0.86370 0.91891 0.83476 0.90315 0.90874 0.93047 0.92655 0.74607 0.87093 0.87209 0.92012 0.89927 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 71.24 0.75 0.41 16 2 C 0.19 2.94 8.34 88.34 0.74 3.68 16 3 N -0.52 -10.81 11.29 -303.83 -3.43 -14.24 16 4 C -0.04 -0.67 11.80 83.39 0.98 0.31 16 5 C -0.05 -0.83 6.90 24.79 0.17 -0.65 16 6 C 0.15 1.48 6.08 85.56 0.52 2.00 16 7 N -0.68 -7.64 6.55 -492.86 -3.23 -10.87 16 8 C 0.07 0.61 4.14 45.44 0.19 0.80 16 9 H 0.10 0.56 7.87 -2.39 -0.02 0.54 16 10 C -0.12 -1.46 7.44 31.21 0.23 -1.22 16 11 C -0.11 -1.37 3.76 -10.18 -0.04 -1.41 16 12 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 13 C 0.13 2.85 5.52 86.38 0.48 3.33 16 14 N -0.71 -17.37 5.56 -463.07 -2.57 -19.94 16 15 C 0.53 19.68 7.85 87.66 0.69 20.37 16 16 O -0.57 -26.99 15.86 -3.03 -0.05 -27.04 16 17 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 18 S -0.16 -8.72 20.57 -56.49 -1.16 -9.88 16 19 C -0.55 -31.24 9.50 67.95 0.65 -30.59 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.75 5.49 84.86 0.47 1.22 16 22 N -0.91 -56.38 13.22 21.65 0.29 -56.09 16 23 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 24 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 C -0.13 -1.32 7.20 31.12 0.22 -1.10 16 28 O -0.21 -3.53 10.77 -3.67 -0.04 -3.57 16 29 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.06 0.46 8.13 -2.39 -0.02 0.44 16 35 H 0.35 3.94 8.54 -89.69 -0.77 3.17 16 36 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.07 1.23 7.90 -2.39 -0.02 1.22 16 38 H 0.05 1.31 7.85 -2.38 -0.02 1.29 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.42 7.07 8.47 -92.71 -0.79 6.28 16 41 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 42 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.08 1.07 8.10 -2.39 -0.02 1.05 16 45 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -83.53 397.86 -2.22 -85.76 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -0.54 Total: 17.71 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 6.48 Total: -7.52 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -8.95 Total: -101.14 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.09 Total: -30.61 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -83.53 -2.22 -85.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488714310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.119 kcal (2) G-P(sol) polarization free energy of solvation -83.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds