Wall clock time and date at job start Tue Mar 31 2020 22:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30260 * 125.61938 * 2 1 4 4 C 1.34478 * 108.70047 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.16492 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.46935 * 274.99954 * 5 4 3 7 7 C 1.46898 * 110.99738 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47176 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47221 * 65.00107 * 8 7 6 10 10 N 1.46496 * 109.47023 * 304.99994 * 8 7 6 11 11 C 1.34778 * 120.00109 * 154.99486 * 10 8 7 12 12 O 1.21287 * 119.99772 * 0.02562 * 11 10 8 13 13 C 1.50697 * 120.00279 * 179.97438 * 11 10 8 14 14 S 1.81003 * 109.47305 * 180.02562 * 13 11 10 15 15 C 1.76196 * 100.00098 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00158 * 359.97438 * 15 14 13 17 17 C 1.38796 * 120.00121 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00158 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00200 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47023 * 59.99670 * 19 17 15 21 21 H 1.48495 * 109.47179 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.46998 * 299.99674 * 19 17 15 23 23 C 1.53002 * 109.47329 * 184.99973 * 8 7 6 24 24 C 1.52996 * 117.49881 * 248.74634 * 23 8 7 25 25 C 1.52994 * 117.49751 * 180.08638 * 23 8 7 26 26 C 1.34336 * 107.66858 * 0.02562 * 4 3 2 27 27 O 1.33966 * 125.62032 * 180.29479 * 2 1 3 28 28 H 1.09005 * 109.47321 * 89.99603 * 1 2 3 29 29 H 1.08997 * 109.47185 * 209.99467 * 1 2 3 30 30 H 1.09001 * 109.47373 * 329.99807 * 1 2 3 31 31 H 1.09002 * 109.47360 * 35.00271 * 5 4 3 32 32 H 1.08998 * 109.47135 * 155.00279 * 5 4 3 33 33 H 1.00894 * 111.00107 * 303.95122 * 6 5 4 34 34 H 1.09003 * 109.47587 * 300.00194 * 7 6 5 35 35 H 1.08998 * 109.47354 * 60.00424 * 7 6 5 36 36 H 0.96996 * 120.00270 * 335.00149 * 10 8 7 37 37 H 1.08992 * 109.47513 * 300.00605 * 13 11 10 38 38 H 1.09004 * 109.47352 * 60.00594 * 13 11 10 39 39 H 0.97002 * 120.00360 * 180.02562 * 18 17 15 40 40 H 1.08998 * 115.54805 * 34.41522 * 23 8 7 41 41 H 1.09005 * 117.50018 * 0.02562 * 24 23 8 42 42 H 1.09001 * 117.49767 * 145.01745 * 24 23 8 43 43 H 1.09007 * 117.50114 * 214.97760 * 25 23 8 44 44 H 1.09006 * 117.50041 * 0.02562 * 25 23 8 45 45 H 1.08002 * 126.43952 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7570 1.5727 0.0013 6 7 5.0767 1.9635 -1.3782 7 6 6.2483 2.8488 -1.4164 8 6 6.5494 3.2341 -2.8662 9 1 5.7260 3.8282 -3.2628 10 7 6.7077 2.0204 -3.6712 11 6 6.4777 2.0574 -4.9987 12 8 6.1400 3.0957 -5.5269 13 6 6.6411 0.8090 -5.8269 14 16 6.2640 1.1797 -7.5580 15 6 6.5270 -0.4080 -8.2752 16 1 6.8304 -1.2377 -7.6539 17 6 6.3452 -0.5923 -9.6388 18 7 5.9758 0.4189 -10.3962 19 14 6.6247 -2.2755 -10.3993 20 1 5.7014 -3.2589 -9.7781 21 1 6.3654 -2.2079 -11.8599 22 1 8.0287 -2.6978 -10.1644 23 6 7.8407 4.0530 -2.9188 24 6 7.7240 5.5332 -3.2876 25 6 8.3140 4.5384 -4.2903 26 6 3.5698 -0.6757 0.0004 27 8 2.2872 -1.0890 -0.0056 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5139 31 1 4.5417 2.4639 0.5908 32 1 5.6067 1.0462 0.4359 33 1 5.2173 1.1518 -1.9606 34 1 6.0429 3.7488 -0.8369 35 1 7.1086 2.3316 -0.9916 36 1 6.9780 1.1901 -3.2489 37 1 7.6679 0.4521 -5.7474 38 1 5.9599 0.0398 -5.4631 39 1 5.8484 0.2901 -11.3491 40 1 8.6042 3.7739 -2.1926 41 1 6.7271 5.9238 -3.4925 42 1 8.4109 6.2280 -2.8044 43 1 9.3890 4.5792 -4.4664 44 1 7.7052 4.2748 -5.1552 45 1 4.4469 -1.3058 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498729232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:32 Heat of formation + Delta-G solvation = 12.764367 kcal Electronic energy + Delta-G solvation = -26277.272146 eV Core-core repulsion = 22423.668736 eV Total energy + Delta-G solvation = -3853.603410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.56913 -39.79965 -37.42929 -36.52742 -34.95108 -33.71591 -32.42845 -32.39619 -30.25604 -28.70492 -27.56713 -25.57826 -25.38957 -22.59142 -22.11748 -21.89568 -21.34035 -20.72657 -20.19432 -17.89676 -17.45992 -17.00883 -16.65040 -16.15333 -15.77162 -15.71929 -15.14033 -14.85814 -14.79633 -14.60726 -14.30512 -14.04101 -13.71192 -13.51246 -13.41193 -13.11497 -12.85005 -12.66512 -12.26114 -12.22043 -12.05727 -11.85794 -11.54454 -11.28556 -11.17339 -11.03497 -11.02569 -10.76911 -10.72962 -10.26861 -10.11785 -9.80255 -9.30801 -9.08766 -9.05244 -8.81104 -8.66854 -8.22330 -6.48035 -6.20625 -3.90786 1.17671 2.34717 2.50114 3.01766 3.11226 3.23534 3.27377 3.30298 3.61758 3.67566 3.93392 4.08513 4.21403 4.47952 4.52657 4.64870 4.89374 4.93741 4.97415 5.04862 5.08397 5.10710 5.14367 5.19216 5.20874 5.26828 5.29785 5.38788 5.51798 5.63807 5.64923 5.65634 5.76043 5.86876 5.92025 6.01432 6.11654 6.14885 6.23714 6.54838 6.62242 6.72369 7.03609 7.52104 7.59792 7.73087 8.35631 8.66761 9.24517 10.86686 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007789 B = 0.002951 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3593.900367 B = 9484.529293 C =12348.458405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.189 3.811 3 N -0.466 5.466 4 C -0.007 4.007 5 C 0.142 3.858 6 N -0.681 5.681 7 C 0.059 3.941 8 C 0.180 3.820 9 H 0.098 0.902 10 N -0.731 5.731 11 C 0.538 3.462 12 O -0.512 6.512 13 C -0.154 4.154 14 S -0.057 6.057 15 C -0.537 4.537 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.174 4.174 24 C -0.172 4.172 25 C -0.177 4.177 26 C -0.073 4.073 27 O -0.203 6.203 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.344 0.656 34 H 0.089 0.911 35 H 0.036 0.964 36 H 0.391 0.609 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.269 0.731 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.124 0.876 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.187 0.325 25.801 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 N -0.196 5.196 4 C -0.127 4.127 5 C 0.013 3.987 6 N -0.313 5.313 7 C -0.070 4.070 8 C 0.075 3.925 9 H 0.116 0.884 10 N -0.384 5.384 11 C 0.324 3.676 12 O -0.386 6.386 13 C -0.305 4.305 14 S 0.170 5.830 15 C -0.685 4.685 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.744 3.256 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.194 4.194 24 C -0.209 4.209 25 C -0.214 4.214 26 C -0.145 4.145 27 O -0.090 6.090 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.164 0.836 34 H 0.108 0.892 35 H 0.054 0.946 36 H 0.225 0.775 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.142 0.858 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.521 3.223 24.722 25.178 hybrid contribution 1.944 -4.096 0.511 4.563 sum -1.576 -0.874 25.232 25.297 Atomic orbital electron populations 1.20268 0.81304 1.04967 1.04963 1.26398 0.96646 0.78579 1.00216 1.70360 1.01527 1.29990 1.17728 1.21576 0.93324 0.92210 1.05600 1.20115 0.90592 0.97152 0.90882 1.60273 1.39422 1.22512 1.09121 1.22211 0.90704 0.97875 0.96246 1.20472 0.96081 0.86429 0.89539 0.88444 1.46016 1.72196 1.12063 1.08128 1.20204 0.75592 0.90287 0.81476 1.90634 1.44772 1.32144 1.71093 1.23535 1.04796 0.98042 1.04104 1.85383 1.89550 1.15788 0.92302 1.22828 1.53940 0.95897 0.95814 0.91079 1.24980 0.94611 0.97884 0.96057 1.70006 1.43663 1.30536 1.06064 0.86243 0.78818 0.82543 0.78006 1.19965 1.20803 1.19968 1.22621 0.99496 0.96631 1.00607 1.22915 1.02762 0.91177 1.04076 1.23332 1.01222 1.02457 0.94378 1.24783 0.85148 0.96121 1.08405 1.84444 1.16842 1.37872 1.69798 0.88704 0.89432 0.88096 0.89095 0.93444 0.83645 0.89241 0.94604 0.77533 0.89404 0.89454 0.92135 0.88292 0.88640 0.89266 0.89574 0.85767 0.77052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.00 0.38 0.03 16 2 C 0.19 1.96 8.34 -12.95 -0.11 1.85 16 3 N -0.47 -5.79 11.29 -7.36 -0.08 -5.88 16 4 C -0.01 -0.07 6.62 -82.81 -0.55 -0.62 16 5 C 0.14 1.22 6.23 -4.98 -0.03 1.19 16 6 N -0.68 -6.82 6.48 -115.06 -0.75 -7.57 16 7 C 0.06 0.52 5.28 -3.82 -0.02 0.50 16 8 C 0.18 2.12 2.58 -67.93 -0.18 1.94 16 9 H 0.10 1.45 7.34 -51.93 -0.38 1.07 16 10 N -0.73 -9.38 4.34 -53.81 -0.23 -9.61 16 11 C 0.54 9.70 7.18 -10.99 -0.08 9.63 16 12 O -0.51 -11.11 12.89 5.55 0.07 -11.04 16 13 C -0.15 -3.07 6.16 36.00 0.22 -2.84 16 14 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 15 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 16 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 19 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.17 -1.96 5.36 -90.62 -0.49 -2.45 16 24 C -0.17 -1.98 10.18 -26.70 -0.27 -2.25 16 25 C -0.18 -2.46 9.73 -26.70 -0.26 -2.72 16 26 C -0.07 -0.66 12.08 29.36 0.35 -0.31 16 27 O -0.20 -2.13 10.77 5.37 0.06 -2.07 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.34 3.47 7.57 -39.29 -0.30 3.17 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.39 3.90 8.15 -40.82 -0.33 3.57 16 37 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 38 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 41 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.12 2.22 5.02 -51.93 -0.26 1.95 16 45 H 0.21 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -36.29 393.66 -9.06 -45.35 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.73 Total: 6.72 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.83 Total: -9.01 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.33 Total: -48.53 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.13 Total: -13.11 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.29 -9.06 -45.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498729232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.110 kcal (2) G-P(sol) polarization free energy of solvation -36.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds