Wall clock time and date at job start Tue Mar 31 2020 22:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30260 * 125.61938 * 2 1 4 4 C 1.34478 * 108.70047 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.16492 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.46935 * 274.99954 * 5 4 3 7 7 C 1.46898 * 110.99738 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47176 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47221 * 65.00107 * 8 7 6 10 10 N 1.46496 * 109.47023 * 304.99994 * 8 7 6 11 11 C 1.34778 * 120.00109 * 154.99486 * 10 8 7 12 12 O 1.21287 * 119.99772 * 0.02562 * 11 10 8 13 13 C 1.50697 * 120.00279 * 179.97438 * 11 10 8 14 14 S 1.81003 * 109.47305 * 180.02562 * 13 11 10 15 15 C 1.76196 * 100.00098 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00158 * 359.97438 * 15 14 13 17 17 C 1.38796 * 120.00121 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00158 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00200 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47023 * 59.99670 * 19 17 15 21 21 H 1.48495 * 109.47179 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.46998 * 299.99674 * 19 17 15 23 23 C 1.53002 * 109.47329 * 184.99973 * 8 7 6 24 24 C 1.52996 * 117.49881 * 248.74634 * 23 8 7 25 25 C 1.52994 * 117.49751 * 180.08638 * 23 8 7 26 26 C 1.34336 * 107.66858 * 0.02562 * 4 3 2 27 27 O 1.33966 * 125.62032 * 180.29479 * 2 1 3 28 28 H 1.09005 * 109.47321 * 89.99603 * 1 2 3 29 29 H 1.08997 * 109.47185 * 209.99467 * 1 2 3 30 30 H 1.09001 * 109.47373 * 329.99807 * 1 2 3 31 31 H 1.09002 * 109.47360 * 35.00271 * 5 4 3 32 32 H 1.08998 * 109.47135 * 155.00279 * 5 4 3 33 33 H 1.00894 * 111.00107 * 303.95122 * 6 5 4 34 34 H 1.09003 * 109.47587 * 300.00194 * 7 6 5 35 35 H 1.08998 * 109.47354 * 60.00424 * 7 6 5 36 36 H 0.96996 * 120.00270 * 335.00149 * 10 8 7 37 37 H 1.08992 * 109.47513 * 300.00605 * 13 11 10 38 38 H 1.09004 * 109.47352 * 60.00594 * 13 11 10 39 39 H 0.97002 * 120.00360 * 180.02562 * 18 17 15 40 40 H 1.08998 * 115.54805 * 34.41522 * 23 8 7 41 41 H 1.09005 * 117.50018 * 0.02562 * 24 23 8 42 42 H 1.09001 * 117.49767 * 145.01745 * 24 23 8 43 43 H 1.09007 * 117.50114 * 214.97760 * 25 23 8 44 44 H 1.09006 * 117.50041 * 0.02562 * 25 23 8 45 45 H 1.08002 * 126.43952 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7570 1.5727 0.0013 6 7 5.0767 1.9635 -1.3782 7 6 6.2483 2.8488 -1.4164 8 6 6.5494 3.2341 -2.8662 9 1 5.7260 3.8282 -3.2628 10 7 6.7077 2.0204 -3.6712 11 6 6.4777 2.0574 -4.9987 12 8 6.1400 3.0957 -5.5269 13 6 6.6411 0.8090 -5.8269 14 16 6.2640 1.1797 -7.5580 15 6 6.5270 -0.4080 -8.2752 16 1 6.8304 -1.2377 -7.6539 17 6 6.3452 -0.5923 -9.6388 18 7 5.9758 0.4189 -10.3962 19 14 6.6247 -2.2755 -10.3993 20 1 5.7014 -3.2589 -9.7781 21 1 6.3654 -2.2079 -11.8599 22 1 8.0287 -2.6978 -10.1644 23 6 7.8407 4.0530 -2.9188 24 6 7.7240 5.5332 -3.2876 25 6 8.3140 4.5384 -4.2903 26 6 3.5698 -0.6757 0.0004 27 8 2.2872 -1.0890 -0.0056 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5139 31 1 4.5417 2.4639 0.5908 32 1 5.6067 1.0462 0.4359 33 1 5.2173 1.1518 -1.9606 34 1 6.0429 3.7488 -0.8369 35 1 7.1086 2.3316 -0.9916 36 1 6.9780 1.1901 -3.2489 37 1 7.6679 0.4521 -5.7474 38 1 5.9599 0.0398 -5.4631 39 1 5.8484 0.2901 -11.3491 40 1 8.6042 3.7739 -2.1926 41 1 6.7271 5.9238 -3.4925 42 1 8.4109 6.2280 -2.8044 43 1 9.3890 4.5792 -4.4664 44 1 7.7052 4.2748 -5.1552 45 1 4.4469 -1.3058 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498729232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:32 Heat of formation + Delta-G solvation = -16.103825 kcal Electronic energy + Delta-G solvation = -26278.523965 eV Core-core repulsion = 22423.668736 eV Total energy + Delta-G solvation = -3854.855229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.28135 -41.04584 -38.54963 -37.35430 -35.79526 -34.78642 -34.57814 -33.12137 -31.44675 -29.76504 -28.40921 -27.63732 -26.24538 -23.44484 -23.10341 -22.63304 -22.21053 -21.82336 -21.28533 -19.83226 -18.29890 -17.89082 -17.73768 -17.31139 -16.88489 -16.87865 -16.69719 -16.02748 -15.91045 -15.68080 -15.44273 -15.01711 -14.78006 -14.62966 -14.50147 -14.17787 -13.88794 -13.52816 -13.31664 -13.17067 -13.04593 -12.98032 -12.87378 -12.81054 -12.61488 -12.48456 -12.25205 -12.06298 -11.74106 -11.49597 -11.27911 -11.12760 -11.10435 -10.75906 -10.26146 -9.99264 -9.76656 -9.35991 -8.65120 -8.34281 -6.11835 0.48981 1.27205 1.43144 1.46767 1.56356 1.60796 1.67712 1.88475 2.22795 2.28891 2.97145 2.99590 3.06751 3.22556 3.34753 3.75361 3.84563 3.96259 3.99226 4.03789 4.14456 4.24379 4.30154 4.32917 4.40524 4.50648 4.51124 4.52983 4.61625 4.64530 4.76564 4.83694 4.84328 4.90889 4.99086 5.07950 5.08826 5.30099 5.35836 5.40648 5.41299 5.56643 5.97547 6.19420 6.32315 6.55758 6.80814 7.06776 7.33451 8.74614 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007789 B = 0.002951 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3593.900367 B = 9484.529293 C =12348.458405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.177 3.823 3 N -0.507 5.507 4 C -0.033 4.033 5 C 0.148 3.852 6 N -0.703 5.703 7 C 0.071 3.929 8 C 0.181 3.819 9 H 0.060 0.940 10 N -0.704 5.704 11 C 0.539 3.461 12 O -0.555 6.555 13 C -0.129 4.129 14 S -0.148 6.148 15 C -0.547 4.547 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 0.997 3.003 20 H -0.262 1.262 21 H -0.279 1.279 22 H -0.261 1.261 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.206 4.206 26 C -0.068 4.068 27 O -0.214 6.214 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.343 0.657 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.411 0.589 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.132 0.868 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 -1.824 28.483 28.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.030 4.030 3 N -0.238 5.238 4 C -0.153 4.153 5 C 0.019 3.981 6 N -0.336 5.336 7 C -0.058 4.058 8 C 0.076 3.924 9 H 0.078 0.922 10 N -0.357 5.357 11 C 0.325 3.675 12 O -0.433 6.433 13 C -0.280 4.280 14 S 0.079 5.921 15 C -0.695 4.695 16 H 0.100 0.900 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.819 3.181 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.174 4.174 24 C -0.199 4.199 25 C -0.243 4.243 26 C -0.139 4.139 27 O -0.101 6.101 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.247 0.753 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.099 0.901 42 H 0.134 0.866 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -2.117 1.061 27.468 27.570 hybrid contribution 1.488 -3.366 -0.217 3.686 sum -0.629 -2.305 27.252 27.356 Atomic orbital electron populations 1.20467 0.78964 1.06380 1.05636 1.27170 0.98013 0.78275 0.99520 1.70347 1.02905 1.31342 1.19220 1.21993 0.93332 0.93344 1.06584 1.20139 0.90948 0.97018 0.89981 1.60213 1.40318 1.22813 1.10233 1.22132 0.91576 0.98506 0.93598 1.20543 0.95373 0.85480 0.91022 0.92160 1.45699 1.70255 1.13555 1.06208 1.19921 0.75746 0.88898 0.82981 1.90643 1.47016 1.33307 1.72311 1.23364 1.06157 0.99460 0.99061 1.85579 1.90273 1.17381 0.98899 1.23177 1.53838 0.95997 0.96502 0.90010 1.26123 0.93973 1.02464 0.96593 1.70180 1.44957 1.33266 1.06409 0.85022 0.79381 0.76810 0.76903 1.18678 1.20428 1.18585 1.22706 0.99385 0.96196 0.99064 1.22959 1.02381 0.91826 1.02701 1.23163 1.01048 1.05714 0.94352 1.25484 0.85526 0.96204 1.06706 1.84456 1.17600 1.38136 1.69913 0.88248 0.87272 0.87421 0.89776 0.90181 0.83840 0.88408 0.91344 0.75255 0.87475 0.87699 0.92025 0.85010 0.90056 0.86590 0.88754 0.90052 0.73520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 71.24 0.75 0.11 16 2 C 0.18 3.59 8.34 88.34 0.74 4.33 16 3 N -0.51 -12.47 11.29 -291.98 -3.30 -15.76 16 4 C -0.03 -0.65 6.62 41.26 0.27 -0.38 16 5 C 0.15 2.19 6.23 85.56 0.53 2.73 16 6 N -0.70 -12.56 6.48 -517.93 -3.36 -15.92 16 7 C 0.07 1.02 5.28 86.30 0.46 1.48 16 8 C 0.18 3.99 2.58 44.99 0.12 4.10 16 9 H 0.06 1.84 7.34 -2.39 -0.02 1.82 16 10 N -0.70 -16.99 4.34 -442.53 -1.92 -18.91 16 11 C 0.54 19.56 7.18 87.66 0.63 20.19 16 12 O -0.55 -25.31 12.89 -3.05 -0.04 -25.35 16 13 C -0.13 -5.10 6.16 71.23 0.44 -4.66 16 14 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 15 C -0.55 -31.42 9.50 67.95 0.65 -30.77 16 16 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 17 C 0.01 0.76 5.49 84.86 0.47 1.22 16 18 N -0.91 -56.52 13.22 21.65 0.29 -56.24 16 19 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 23 C -0.15 -3.14 5.36 -10.80 -0.06 -3.20 16 24 C -0.16 -3.55 10.18 30.62 0.31 -3.24 16 25 C -0.21 -5.73 9.73 30.62 0.30 -5.43 16 26 C -0.07 -1.10 12.08 66.93 0.81 -0.29 16 27 O -0.21 -4.23 10.77 -3.70 -0.04 -4.27 16 28 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.34 6.09 7.57 -89.70 -0.68 5.41 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.41 6.91 8.15 -92.71 -0.76 6.15 16 37 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 38 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 39 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.13 1.91 8.11 -2.39 -0.02 1.89 16 41 H 0.08 2.02 8.05 -2.38 -0.02 2.00 16 42 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 44 H 0.08 3.08 5.02 -2.38 -0.01 3.07 16 45 H 0.25 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -84.46 393.66 -1.51 -85.97 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.41 Total: 27.98 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 6.40 Total: -13.82 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -8.29 Total: -106.83 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.08 Total: -29.62 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -84.46 -1.51 -85.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498729232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.862 kcal (2) G-P(sol) polarization free energy of solvation -84.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds