Wall clock time and date at job start Tue Mar 31 2020 22:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29030 * 124.91677 * 2 1 4 4 C 1.31780 * 117.12372 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.74689 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47180 * 305.02368 * 5 4 3 7 7 O 1.21280 * 119.99945 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99504 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99817 * 184.34239 * 8 6 5 10 10 C 1.53002 * 109.49594 * 58.01479 * 9 8 6 11 11 O 1.42902 * 109.47090 * 54.52460 * 10 9 8 12 12 C 1.53047 * 109.49854 * 297.95478 * 9 8 6 13 13 C 1.53035 * 109.53656 * 301.34833 * 12 9 8 14 14 C 1.53194 * 109.34023 * 298.68273 * 13 12 9 15 15 N 1.46928 * 108.77476 * 54.61840 * 14 13 12 16 16 C 1.36933 * 120.62828 * 126.37252 * 15 14 13 17 17 H 1.07998 * 120.00131 * 205.79099 * 16 15 14 18 18 C 1.38814 * 120.00169 * 25.79103 * 16 15 14 19 19 N 1.31623 * 119.99885 * 30.28905 * 18 16 15 20 20 Si 1.86795 * 120.00302 * 210.28178 * 18 16 15 21 21 H 1.48503 * 109.46933 * 94.99049 * 20 18 16 22 22 H 1.48495 * 109.47477 * 214.99204 * 20 18 16 23 23 H 1.48501 * 109.47059 * 334.99427 * 20 18 16 24 24 C 1.46925 * 118.73714 * 306.39372 * 15 14 13 25 25 C 1.33640 * 114.49927 * 0.23601 * 4 3 2 26 26 S 1.70978 * 124.91450 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.46617 * 90.00262 * 1 2 3 28 28 H 1.08997 * 109.47324 * 209.99850 * 1 2 3 29 29 H 1.09000 * 109.47162 * 330.00443 * 1 2 3 30 30 H 1.08999 * 109.46851 * 185.02693 * 5 4 3 31 31 H 1.09000 * 109.47382 * 65.02888 * 5 4 3 32 32 H 0.96999 * 120.00705 * 4.34500 * 8 6 5 33 33 H 1.08994 * 109.47562 * 294.52331 * 10 9 8 34 34 H 1.09003 * 109.47132 * 174.51983 * 10 9 8 35 35 H 0.96695 * 114.00431 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.46000 * 61.39843 * 12 9 8 37 37 H 1.08991 * 109.45901 * 181.35875 * 12 9 8 38 38 H 1.08998 * 109.49736 * 178.71250 * 13 12 9 39 39 H 1.09001 * 109.50178 * 58.65173 * 13 12 9 40 40 H 1.09001 * 109.58499 * 294.83542 * 14 13 12 41 41 H 1.08999 * 109.70442 * 174.47595 * 14 13 12 42 42 H 0.97002 * 119.99852 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.58498 * 293.81673 * 24 15 14 44 44 H 1.09009 * 109.58095 * 173.39609 * 24 15 14 45 45 H 1.08003 * 126.03553 * 179.77021 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2379 2.9356 -1.1642 7 8 3.3235 2.6802 -1.9190 8 7 4.9916 4.0345 -1.3660 9 6 4.6491 4.9705 -2.4399 10 6 3.2243 5.4875 -2.2314 11 8 3.1064 6.0437 -0.9204 12 6 4.7404 4.2549 -3.7897 13 6 6.1569 3.7094 -3.9849 14 6 7.1531 4.8731 -3.9855 15 7 6.9711 5.6521 -2.7530 16 6 8.0327 5.9101 -1.9276 17 1 7.8672 6.0939 -0.8763 18 6 9.3218 5.9355 -2.4420 19 7 9.5258 6.3061 -3.6884 20 14 10.7669 5.4439 -1.3654 21 1 11.0859 4.0109 -1.5892 22 1 11.9481 6.2740 -1.7128 23 1 10.4155 5.6557 0.0618 24 6 5.6282 6.1485 -2.4230 25 6 3.9354 -0.4006 -0.0040 26 16 2.4856 -1.4020 0.0006 27 1 -0.3633 0.0000 -1.0278 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 5.5449 1.6352 -0.0894 31 1 4.4369 2.5834 0.9312 32 1 5.7607 4.2058 -0.8004 33 1 2.5190 4.6638 -2.3414 34 1 3.0044 6.2556 -2.9730 35 1 2.2273 6.3922 -0.7185 36 1 4.0271 3.4310 -3.8129 37 1 4.5091 4.9579 -4.5897 38 1 6.2150 3.1802 -4.9360 39 1 6.3982 3.0243 -3.1722 40 1 6.9702 5.5103 -4.8508 41 1 8.1711 4.4855 -4.0257 42 1 10.4266 6.3242 -4.0477 43 1 5.3210 6.8896 -3.1609 44 1 5.6392 6.6002 -1.4310 45 1 4.9545 -0.7581 -0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501363621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:28 Heat of formation + Delta-G solvation = -16.728891 kcal Electronic energy + Delta-G solvation = -28516.170350 eV Core-core repulsion = 24661.288016 eV Total energy + Delta-G solvation = -3854.882334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.36590 -39.49629 -37.29031 -35.99160 -33.78147 -33.16524 -32.21871 -30.52433 -30.38406 -29.07107 -27.70751 -25.43451 -25.04394 -23.23005 -22.17596 -21.20950 -20.26367 -19.65247 -18.62056 -17.76428 -16.91865 -16.70017 -16.62742 -15.61624 -15.08999 -14.95217 -14.81585 -14.71382 -14.10457 -14.00678 -13.72626 -13.59949 -13.32629 -13.08619 -12.86785 -12.77212 -12.58589 -12.38594 -12.30048 -11.96620 -11.83477 -11.59088 -11.33855 -11.17581 -11.08532 -10.72839 -10.37894 -10.18842 -10.09698 -9.77178 -9.67440 -9.60461 -9.53335 -9.41354 -9.03406 -8.70349 -8.42727 -8.36026 -6.79532 -5.87771 -3.19469 0.66757 1.30360 1.65322 2.76115 3.13968 3.35554 3.44691 3.45369 3.74880 3.98879 4.46871 4.56976 4.76164 5.04239 5.10994 5.16855 5.22154 5.26928 5.28778 5.37964 5.45850 5.58267 5.61861 5.67822 5.71947 5.74271 5.81029 5.97670 6.07323 6.12755 6.31056 6.41872 6.49077 6.64473 6.68202 6.81614 6.88935 7.18274 7.28107 7.50536 7.78281 7.79222 7.92305 8.16650 8.34942 8.78766 9.12716 9.79574 10.37196 11.20317 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.003365 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.783119 B = 8319.543516 C = 9258.015891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.050 3.950 3 N -0.442 5.442 4 C 0.099 3.901 5 C -0.072 4.072 6 C 0.522 3.478 7 O -0.537 6.537 8 N -0.691 5.691 9 C 0.170 3.830 10 C 0.067 3.933 11 O -0.564 6.564 12 C -0.119 4.119 13 C -0.133 4.133 14 C 0.170 3.830 15 N -0.587 5.587 16 C -0.265 4.265 17 H 0.068 0.932 18 C 0.011 3.989 19 N -0.884 5.884 20 Si 0.888 3.112 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.277 1.277 24 C 0.148 3.852 25 C -0.259 4.259 26 S 0.095 5.905 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.406 0.594 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.369 0.631 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.074 0.926 42 H 0.254 0.746 43 H 0.030 0.970 44 H 0.067 0.933 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.569 -12.281 6.747 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.229 4.229 3 N -0.156 5.156 4 C -0.033 4.033 5 C -0.115 4.115 6 C 0.307 3.693 7 O -0.415 6.415 8 N -0.341 5.341 9 C 0.082 3.918 10 C -0.012 4.012 11 O -0.368 6.368 12 C -0.158 4.158 13 C -0.172 4.172 14 C 0.044 3.956 15 N -0.309 5.309 16 C -0.394 4.394 17 H 0.086 0.914 18 C -0.189 4.189 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.215 1.215 22 H -0.220 1.220 23 H -0.202 1.202 24 C 0.021 3.979 25 C -0.398 4.398 26 S 0.349 5.651 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.241 0.759 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.214 0.786 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.085 0.915 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -15.879 -13.144 6.147 21.510 hybrid contribution 1.383 0.708 0.530 1.642 sum -14.496 -12.436 6.677 20.232 Atomic orbital electron populations 1.20410 0.85395 1.03866 1.03858 1.27013 1.01693 0.90579 1.03662 1.66003 1.04340 1.30980 1.14269 1.19601 0.89931 0.93076 1.00684 1.20281 0.97750 0.93577 0.99856 1.20016 0.82336 0.81377 0.85597 1.90607 1.30994 1.73201 1.46689 1.45730 1.30949 1.22751 1.34704 1.20897 0.93061 0.90828 0.87007 1.22618 0.98003 0.96727 0.83827 1.86501 1.35975 1.81200 1.33096 1.21749 0.98621 1.00327 0.95096 1.22037 0.95449 0.99861 0.99887 1.20728 0.97409 0.89646 0.87791 1.44115 1.02849 1.59091 1.24872 1.19096 0.84870 1.45476 0.89951 0.91407 1.24875 0.97796 1.00066 0.96191 1.70237 1.20773 1.45866 1.15751 0.86497 0.82653 0.78522 0.80574 1.21505 1.22006 1.20228 1.21086 0.85651 0.91406 0.99735 1.26744 1.03043 0.95637 1.14352 1.83808 0.98283 1.13470 1.69517 0.89658 0.90365 0.89356 0.87493 0.87366 0.75895 0.91948 0.93812 0.78553 0.91022 0.92283 0.93357 0.92685 0.96377 0.90716 0.93657 0.95267 0.91457 0.80620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.46 36.01 0.38 -0.24 16 2 C 0.05 0.59 7.39 -13.45 -0.10 0.49 16 3 N -0.44 -6.59 9.68 -8.05 -0.08 -6.67 16 4 C 0.10 1.39 5.64 -84.23 -0.47 0.91 16 5 C -0.07 -0.96 6.20 -29.03 -0.18 -1.14 16 6 C 0.52 8.69 7.21 -10.99 -0.08 8.61 16 7 O -0.54 -10.29 11.76 5.56 0.07 -10.22 16 8 N -0.69 -11.82 3.94 -47.49 -0.19 -12.01 16 9 C 0.17 3.05 0.45 -131.70 -0.06 2.99 16 10 C 0.07 1.09 5.60 37.16 0.21 1.30 16 11 O -0.56 -8.68 13.08 -35.23 -0.46 -9.14 16 12 C -0.12 -2.18 4.51 -26.69 -0.12 -2.30 16 13 C -0.13 -2.60 5.93 -26.61 -0.16 -2.76 16 14 C 0.17 3.94 5.46 -3.71 -0.02 3.92 16 15 N -0.59 -13.94 2.87 -172.32 -0.49 -14.43 16 16 C -0.27 -6.91 9.50 -15.06 -0.14 -7.05 16 17 H 0.07 1.74 7.98 -52.49 -0.42 1.32 16 18 C 0.01 0.30 4.54 -17.43 -0.08 0.22 16 19 N -0.88 -25.18 11.96 55.49 0.66 -24.51 16 20 Si 0.89 20.89 29.65 -169.99 -5.04 15.85 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.15 3.06 5.07 -3.72 -0.02 3.04 16 25 C -0.26 -3.03 11.07 29.12 0.32 -2.71 16 26 S 0.10 0.97 23.18 -107.50 -2.49 -1.52 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.11 1.19 8.03 -51.93 -0.42 0.77 16 31 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.41 7.01 8.44 -40.82 -0.34 6.67 16 33 H 0.06 1.08 6.35 -51.93 -0.33 0.75 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.37 4.00 9.12 45.56 0.42 4.42 16 36 H 0.07 1.36 6.22 -51.93 -0.32 1.03 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 1.10 7.53 -51.93 -0.39 0.71 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 1.93 6.31 -51.93 -0.33 1.60 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.43 7.78 -51.92 -0.40 1.02 16 45 H 0.18 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -32.81 373.85 -8.82 -41.62 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.90 Total: 10.11 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -0.52 Total: 5.29 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.10 Total: -57.62 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.40 Total: -19.37 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.04 Total: 15.85 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.81 -8.82 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501363621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.894 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds