Wall clock time and date at job start Tue Mar 31 2020 22:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29030 * 124.91677 * 2 1 4 4 C 1.31780 * 117.12372 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.74689 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47180 * 305.02368 * 5 4 3 7 7 O 1.21280 * 119.99945 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99504 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99817 * 184.34239 * 8 6 5 10 10 C 1.53002 * 109.49594 * 58.01479 * 9 8 6 11 11 O 1.42902 * 109.47090 * 54.52460 * 10 9 8 12 12 C 1.53047 * 109.49854 * 297.95478 * 9 8 6 13 13 C 1.53035 * 109.53656 * 301.34833 * 12 9 8 14 14 C 1.53194 * 109.34023 * 298.68273 * 13 12 9 15 15 N 1.46928 * 108.77476 * 54.61840 * 14 13 12 16 16 C 1.36933 * 120.62828 * 126.37252 * 15 14 13 17 17 H 1.07998 * 120.00131 * 205.79099 * 16 15 14 18 18 C 1.38814 * 120.00169 * 25.79103 * 16 15 14 19 19 N 1.31623 * 119.99885 * 30.28905 * 18 16 15 20 20 Si 1.86795 * 120.00302 * 210.28178 * 18 16 15 21 21 H 1.48503 * 109.46933 * 94.99049 * 20 18 16 22 22 H 1.48495 * 109.47477 * 214.99204 * 20 18 16 23 23 H 1.48501 * 109.47059 * 334.99427 * 20 18 16 24 24 C 1.46925 * 118.73714 * 306.39372 * 15 14 13 25 25 C 1.33640 * 114.49927 * 0.23601 * 4 3 2 26 26 S 1.70978 * 124.91450 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.46617 * 90.00262 * 1 2 3 28 28 H 1.08997 * 109.47324 * 209.99850 * 1 2 3 29 29 H 1.09000 * 109.47162 * 330.00443 * 1 2 3 30 30 H 1.08999 * 109.46851 * 185.02693 * 5 4 3 31 31 H 1.09000 * 109.47382 * 65.02888 * 5 4 3 32 32 H 0.96999 * 120.00705 * 4.34500 * 8 6 5 33 33 H 1.08994 * 109.47562 * 294.52331 * 10 9 8 34 34 H 1.09003 * 109.47132 * 174.51983 * 10 9 8 35 35 H 0.96695 * 114.00431 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.46000 * 61.39843 * 12 9 8 37 37 H 1.08991 * 109.45901 * 181.35875 * 12 9 8 38 38 H 1.08998 * 109.49736 * 178.71250 * 13 12 9 39 39 H 1.09001 * 109.50178 * 58.65173 * 13 12 9 40 40 H 1.09001 * 109.58499 * 294.83542 * 14 13 12 41 41 H 1.08999 * 109.70442 * 174.47595 * 14 13 12 42 42 H 0.97002 * 119.99852 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.58498 * 293.81673 * 24 15 14 44 44 H 1.09009 * 109.58095 * 173.39609 * 24 15 14 45 45 H 1.08003 * 126.03553 * 179.77021 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2379 2.9356 -1.1642 7 8 3.3235 2.6802 -1.9190 8 7 4.9916 4.0345 -1.3660 9 6 4.6491 4.9705 -2.4399 10 6 3.2243 5.4875 -2.2314 11 8 3.1064 6.0437 -0.9204 12 6 4.7404 4.2549 -3.7897 13 6 6.1569 3.7094 -3.9849 14 6 7.1531 4.8731 -3.9855 15 7 6.9711 5.6521 -2.7530 16 6 8.0327 5.9101 -1.9276 17 1 7.8672 6.0939 -0.8763 18 6 9.3218 5.9355 -2.4420 19 7 9.5258 6.3061 -3.6884 20 14 10.7669 5.4439 -1.3654 21 1 11.0859 4.0109 -1.5892 22 1 11.9481 6.2740 -1.7128 23 1 10.4155 5.6557 0.0618 24 6 5.6282 6.1485 -2.4230 25 6 3.9354 -0.4006 -0.0040 26 16 2.4856 -1.4020 0.0006 27 1 -0.3633 0.0000 -1.0278 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 5.5449 1.6352 -0.0894 31 1 4.4369 2.5834 0.9312 32 1 5.7607 4.2058 -0.8004 33 1 2.5190 4.6638 -2.3414 34 1 3.0044 6.2556 -2.9730 35 1 2.2273 6.3922 -0.7185 36 1 4.0271 3.4310 -3.8129 37 1 4.5091 4.9579 -4.5897 38 1 6.2150 3.1802 -4.9360 39 1 6.3982 3.0243 -3.1722 40 1 6.9702 5.5103 -4.8508 41 1 8.1711 4.4855 -4.0257 42 1 10.4266 6.3242 -4.0477 43 1 5.3210 6.8896 -3.1609 44 1 5.6392 6.6002 -1.4310 45 1 4.9545 -0.7581 -0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501363621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:27 Heat of formation + Delta-G solvation = -40.580808 kcal Electronic energy + Delta-G solvation = -28517.204647 eV Core-core repulsion = 24661.288016 eV Total energy + Delta-G solvation = -3855.916631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.56960 -40.63436 -38.74528 -37.37635 -35.41962 -34.16753 -33.72774 -32.36776 -31.73515 -30.10495 -28.64453 -27.28284 -26.61177 -24.20397 -23.88171 -22.64405 -21.73200 -20.56515 -20.07120 -18.80923 -18.60847 -18.15753 -17.81323 -16.90093 -16.68714 -16.21344 -16.02680 -15.90379 -15.75078 -15.19981 -15.11727 -14.76019 -14.56585 -14.44331 -14.28486 -14.14386 -13.96921 -13.51338 -13.36950 -13.18026 -13.01961 -12.97054 -12.89015 -12.80144 -12.43969 -12.30563 -12.16639 -11.93895 -11.81158 -11.50908 -11.22050 -10.99173 -10.53777 -10.48585 -10.34737 -10.24377 -9.74877 -9.58036 -8.76123 -7.90592 -5.24576 -0.18959 0.49540 0.79417 1.48802 1.52463 1.60408 1.80243 1.87722 2.48426 2.54269 3.17971 3.21500 3.32012 3.63838 3.82558 3.94597 4.05142 4.16831 4.24768 4.26151 4.35009 4.39063 4.51395 4.52082 4.55966 4.61545 4.67650 4.75474 4.82883 4.87162 4.89203 4.97533 5.03283 5.05845 5.17745 5.26023 5.28051 5.45250 5.60767 5.72789 5.79794 6.34660 6.82407 6.91720 6.92340 7.11981 7.48699 7.83882 8.38504 9.16180 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.003365 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.783119 B = 8319.543516 C = 9258.015891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.032 3.968 3 N -0.484 5.484 4 C 0.071 3.929 5 C -0.067 4.067 6 C 0.520 3.480 7 O -0.562 6.562 8 N -0.692 5.692 9 C 0.175 3.825 10 C 0.078 3.922 11 O -0.576 6.576 12 C -0.112 4.112 13 C -0.119 4.119 14 C 0.180 3.820 15 N -0.597 5.597 16 C -0.265 4.265 17 H 0.072 0.928 18 C -0.040 4.040 19 N -0.923 5.923 20 Si 0.953 3.047 21 H -0.288 1.288 22 H -0.302 1.302 23 H -0.264 1.264 24 C 0.154 3.846 25 C -0.265 4.265 26 S 0.144 5.856 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.405 0.595 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.390 0.610 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.051 0.949 40 H -0.002 1.002 41 H 0.045 0.955 42 H 0.249 0.751 43 H 0.024 0.976 44 H 0.061 0.939 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.559 -13.929 8.053 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.246 4.246 3 N -0.199 5.199 4 C -0.061 4.061 5 C -0.109 4.109 6 C 0.307 3.693 7 O -0.442 6.442 8 N -0.342 5.342 9 C 0.086 3.914 10 C -0.001 4.001 11 O -0.383 6.383 12 C -0.150 4.150 13 C -0.158 4.158 14 C 0.054 3.946 15 N -0.320 5.320 16 C -0.395 4.395 17 H 0.089 0.911 18 C -0.237 4.237 19 N -0.567 5.567 20 Si 0.781 3.219 21 H -0.215 1.215 22 H -0.230 1.230 23 H -0.188 1.188 24 C 0.028 3.972 25 C -0.404 4.404 26 S 0.399 5.601 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.104 0.896 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.240 0.760 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.239 0.761 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.016 0.984 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -16.915 -14.801 7.487 23.691 hybrid contribution 1.603 1.211 0.134 2.013 sum -15.313 -13.591 7.621 21.846 Atomic orbital electron populations 1.20559 0.83373 1.05103 1.04510 1.27605 1.03206 0.90976 1.02856 1.66013 1.05098 1.32788 1.16001 1.19728 0.89995 0.93888 1.02451 1.20287 0.98914 0.93167 0.98544 1.20542 0.81529 0.81176 0.86049 1.90589 1.31985 1.73740 1.47854 1.45734 1.31103 1.22994 1.34416 1.20722 0.93347 0.89971 0.87328 1.22405 0.96212 0.96826 0.84657 1.86446 1.37975 1.81248 1.32590 1.21670 0.97417 1.00354 0.95600 1.21857 0.95139 0.98248 1.00589 1.20535 0.96806 0.90323 0.86966 1.44281 1.03563 1.59472 1.24697 1.19403 0.85613 1.44047 0.90406 0.91059 1.25583 1.00107 1.00617 0.97376 1.70345 1.20864 1.47925 1.17599 0.85478 0.79214 0.77618 0.79566 1.21453 1.22971 1.18817 1.21080 0.84754 0.92416 0.99000 1.27100 1.04824 0.95478 1.13041 1.83581 0.96670 1.11683 1.68191 0.89164 0.87639 0.89640 0.85391 0.86389 0.76027 0.92847 0.92454 0.76140 0.91114 0.91751 0.91875 0.93013 0.98391 0.93652 0.94175 0.95841 0.92058 0.78548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.46 71.24 0.75 -0.36 16 2 C 0.03 0.71 7.39 88.52 0.65 1.37 16 3 N -0.48 -13.97 9.68 -179.40 -1.74 -15.71 16 4 C 0.07 1.90 5.64 41.52 0.23 2.13 16 5 C -0.07 -1.69 6.20 29.10 0.18 -1.51 16 6 C 0.52 16.80 7.21 87.66 0.63 17.43 16 7 O -0.56 -21.10 11.76 -3.03 -0.04 -21.14 16 8 N -0.69 -23.05 3.94 -422.56 -1.67 -24.72 16 9 C 0.17 6.12 0.45 3.68 0.00 6.12 16 10 C 0.08 2.43 5.60 71.98 0.40 2.83 16 11 O -0.58 -16.87 13.08 -148.98 -1.95 -18.81 16 12 C -0.11 -3.99 4.51 30.62 0.14 -3.86 16 13 C -0.12 -4.60 5.93 30.67 0.18 -4.42 16 14 C 0.18 8.45 5.46 86.36 0.47 8.92 16 15 N -0.60 -28.52 2.87 -699.10 -2.01 -30.53 16 16 C -0.27 -13.83 9.50 84.03 0.80 -13.03 16 17 H 0.07 3.62 7.98 -2.91 -0.02 3.59 16 18 C -0.04 -2.15 4.54 84.86 0.39 -1.76 16 19 N -0.92 -53.68 11.96 21.65 0.26 -53.42 16 20 Si 0.95 43.23 29.65 68.60 2.03 45.26 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 C 0.15 6.30 5.07 86.36 0.44 6.74 16 25 C -0.27 -5.67 11.07 66.78 0.74 -4.93 16 26 S 0.14 2.62 23.18 -56.49 -1.31 1.31 16 27 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.13 2.60 8.03 -2.39 -0.02 2.58 16 31 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.40 13.62 8.44 -92.71 -0.78 12.84 16 33 H 0.05 1.79 6.35 -2.39 -0.02 1.78 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.39 7.74 9.12 -74.06 -0.68 7.07 16 36 H 0.07 2.60 6.22 -2.39 -0.01 2.58 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.05 2.03 7.53 -2.39 -0.02 2.01 16 40 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.04 2.39 6.31 -2.39 -0.02 2.38 16 42 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 43 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 2.57 7.78 -2.38 -0.02 2.55 16 45 H 0.20 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -70.69 373.85 -0.84 -71.52 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -0.43 Total: 30.56 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 6.00 Total: 15.68 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -5.15 Total: -124.37 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -1.98 Total: -39.95 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.31 Total: 1.31 kcal Total: -70.69 -0.84 -71.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501363621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.943 kcal (2) G-P(sol) polarization free energy of solvation -70.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds