Wall clock time and date at job start Tue Mar 31 2020 22:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30707 * 122.10951 * 2 1 4 4 C 1.30556 * 115.90791 * 180.20449 * 3 2 1 5 5 C 1.47253 * 125.54334 * 179.82401 * 4 3 2 6 6 O 1.21622 * 120.00261 * 179.69295 * 5 4 3 7 7 N 1.34783 * 119.99931 * 359.69266 * 5 4 3 8 8 C 1.46496 * 119.99968 * 174.88047 * 7 5 4 9 9 C 1.52998 * 109.49893 * 302.88484 * 8 7 5 10 10 O 1.42905 * 109.47034 * 300.68877 * 9 8 7 11 11 C 1.53049 * 109.49836 * 62.94978 * 8 7 5 12 12 C 1.53031 * 109.53611 * 58.58537 * 11 8 7 13 13 C 1.53187 * 109.31614 * 61.36600 * 12 11 8 14 14 N 1.46927 * 108.77438 * 305.36268 * 13 12 11 15 15 C 1.36933 * 120.62991 * 233.62481 * 14 13 12 16 16 H 1.07997 * 120.00353 * 31.66699 * 15 14 13 17 17 C 1.38813 * 119.99891 * 211.66576 * 15 14 13 18 18 N 1.31617 * 120.00095 * 11.00144 * 17 15 14 19 19 Si 1.86805 * 120.00076 * 191.00286 * 17 15 14 20 20 H 1.48499 * 109.47202 * 59.99807 * 19 17 15 21 21 H 1.48498 * 109.47501 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46920 * 300.00063 * 19 17 15 23 23 C 1.46996 * 118.75350 * 53.61137 * 14 13 12 24 24 S 1.76104 * 108.91397 * 359.55606 * 4 3 2 25 25 C 1.34234 * 122.10671 * 179.71172 * 2 1 3 26 26 C 1.50697 * 125.45633 * 0.04262 * 25 2 1 27 27 H 1.09004 * 109.46949 * 270.28848 * 1 2 3 28 28 H 1.08992 * 109.47021 * 30.28683 * 1 2 3 29 29 H 1.08991 * 109.47186 * 150.28863 * 1 2 3 30 30 H 0.97004 * 119.99772 * 354.87829 * 7 5 4 31 31 H 1.08998 * 109.47164 * 60.68834 * 9 8 7 32 32 H 1.08996 * 109.47348 * 180.68824 * 9 8 7 33 33 H 0.96702 * 113.99725 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.46120 * 178.60952 * 11 8 7 35 35 H 1.09001 * 109.45697 * 298.56839 * 11 8 7 36 36 H 1.09004 * 109.49875 * 181.32124 * 12 11 8 37 37 H 1.09007 * 109.50267 * 301.37884 * 12 11 8 38 38 H 1.08998 * 109.58852 * 65.14892 * 13 12 11 39 39 H 1.09002 * 109.59024 * 185.43554 * 13 12 11 40 40 H 0.97002 * 119.99794 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.62634 * 186.61770 * 23 14 13 42 42 H 1.08998 * 109.58300 * 66.16890 * 23 14 13 43 43 H 1.09004 * 109.47289 * 180.02562 * 26 25 2 44 44 H 1.09001 * 109.46840 * 299.99405 * 26 25 2 45 45 H 1.08996 * 109.47145 * 59.99667 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2018 1.1071 0.0000 4 6 3.4997 0.9661 -0.0042 5 6 4.4801 2.0648 -0.0088 6 8 5.6709 1.8173 -0.0068 7 7 4.0579 3.3447 -0.0151 8 6 5.0284 4.4367 0.0936 9 6 5.8460 4.2676 1.3757 10 8 4.9697 4.2778 2.5044 11 6 5.9648 4.4103 -1.1167 12 6 5.1445 4.5457 -2.4015 13 6 4.4051 5.8873 -2.3915 14 7 3.6134 5.9817 -1.1574 15 6 2.2725 6.2550 -1.2079 16 1 1.6837 5.9167 -2.0476 17 6 1.6701 6.9668 -0.1796 18 7 2.4111 7.5640 0.7296 19 14 -0.1923 7.0773 -0.0863 20 1 -0.7635 5.7123 0.0397 21 1 -0.5816 7.8883 1.0952 22 1 -0.7125 7.7195 -1.3201 23 6 4.2877 5.7771 0.1327 24 16 3.8873 -0.7517 0.0043 25 6 2.2205 -1.1370 0.0057 26 6 1.6453 -2.5299 0.0118 27 1 -0.3633 0.0052 1.0277 28 1 -0.3633 0.8873 -0.5182 29 1 -0.3633 -0.8925 -0.5093 30 1 3.1114 3.5428 -0.0916 31 1 6.3834 3.3199 1.3415 32 1 6.5596 5.0869 1.4623 33 1 5.4208 4.1752 3.3535 34 1 6.6709 5.2378 -1.0477 35 1 6.5112 3.4673 -1.1325 36 1 5.8096 4.5032 -3.2640 37 1 4.4216 3.7318 -2.4592 38 1 5.1274 6.7029 -2.4256 39 1 3.7451 5.9473 -3.2569 40 1 1.9901 8.0617 1.4479 41 1 3.5487 5.7630 0.9338 42 1 5.0004 6.5837 0.3043 43 1 2.4565 -3.2580 0.0162 44 1 1.0312 -2.6655 0.9021 45 1 1.0322 -2.6737 -0.8778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501368015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:11 Heat of formation + Delta-G solvation = -21.178696 kcal Electronic energy + Delta-G solvation = -28875.221886 eV Core-core repulsion = 25020.146594 eV Total energy + Delta-G solvation = -3855.075292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.32232 -39.54806 -37.34561 -35.86447 -33.75614 -33.40598 -32.42719 -30.40552 -29.89801 -29.59019 -26.28401 -25.42106 -25.04490 -24.79541 -22.21904 -21.34108 -20.38907 -19.21857 -18.49735 -17.96109 -17.09363 -16.74099 -16.61658 -15.55043 -15.19430 -14.90878 -14.48657 -14.35054 -14.00218 -13.80510 -13.47973 -13.30573 -13.23530 -13.10080 -13.02419 -12.92375 -12.57656 -12.31602 -12.24340 -12.20958 -11.87255 -11.46908 -11.15816 -11.13002 -10.89435 -10.70205 -10.47807 -10.19458 -10.11754 -9.94184 -9.77776 -9.61196 -9.59378 -9.43302 -9.07376 -8.66075 -8.47651 -8.35805 -6.61556 -5.76999 -3.25743 0.30912 1.17535 1.69193 2.42964 3.40936 3.46342 3.47642 3.48368 3.60404 4.26684 4.50751 4.67915 4.69176 4.82237 5.09153 5.20581 5.35250 5.35374 5.44907 5.54795 5.57640 5.61771 5.64532 5.72458 5.76938 5.82989 5.88269 5.96634 6.10648 6.22301 6.30875 6.40631 6.51913 6.53949 6.65929 6.84808 6.99602 7.07200 7.29185 7.59736 7.69375 7.82150 8.08397 8.13642 8.48721 8.60031 9.22157 9.83727 10.42146 11.30796 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.004793 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.255835 B = 5840.699613 C = 7268.853159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.053 3.947 3 N -0.414 5.414 4 C 0.000 4.000 5 C 0.593 3.407 6 O -0.548 6.548 7 N -0.653 5.653 8 C 0.154 3.846 9 C 0.067 3.933 10 O -0.559 6.559 11 C -0.121 4.121 12 C -0.130 4.130 13 C 0.143 3.857 14 N -0.590 5.590 15 C -0.259 4.259 16 H 0.064 0.936 17 C 0.010 3.990 18 N -0.900 5.900 19 Si 0.902 3.098 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.177 3.823 24 S 0.217 5.783 25 C -0.256 4.256 26 C -0.071 4.071 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.420 0.580 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.368 0.632 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.053 0.947 40 H 0.255 0.745 41 H 0.105 0.895 42 H 0.034 0.966 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.578 -17.058 0.214 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 N -0.131 5.131 4 C -0.276 4.276 5 C 0.374 3.626 6 O -0.427 6.427 7 N -0.303 5.303 8 C 0.066 3.934 9 C -0.013 4.013 10 O -0.362 6.362 11 C -0.159 4.159 12 C -0.169 4.169 13 C 0.017 3.983 14 N -0.313 5.313 15 C -0.388 4.388 16 H 0.082 0.918 17 C -0.189 4.189 18 N -0.543 5.543 19 Si 0.732 3.268 20 H -0.208 1.208 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.051 3.949 24 S 0.474 5.526 25 C -0.378 4.378 26 C -0.130 4.130 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.257 0.743 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.213 0.787 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.123 0.877 42 H 0.052 0.948 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.645 -16.992 -0.108 17.379 hybrid contribution -1.873 0.206 0.527 1.957 sum 1.772 -16.786 0.419 16.885 Atomic orbital electron populations 1.20388 0.87168 1.03396 1.02957 1.20146 0.98724 0.85967 1.03593 1.66716 1.03739 1.30796 1.11805 1.27772 0.93565 0.96886 1.09367 1.16758 0.86035 0.82097 0.77664 1.90725 1.15175 1.83996 1.52844 1.45709 1.12589 1.03161 1.68818 1.21413 0.89608 0.90257 0.92154 1.22584 0.92122 1.00346 0.86206 1.86607 1.36743 1.96797 1.16044 1.21763 0.97569 1.02170 0.94430 1.21936 0.98657 1.00415 0.95879 1.20970 0.93795 0.92996 0.90573 1.44014 1.05611 1.81952 0.99691 1.19084 0.83441 1.28990 1.07314 0.91846 1.25154 0.97927 0.96648 0.99206 1.69938 1.33854 1.34794 1.15700 0.86379 0.85635 0.77742 0.77040 1.20765 1.21657 1.20957 1.21029 0.95983 0.87431 0.90496 1.83806 1.02604 1.02004 1.64193 1.25476 0.98628 1.01655 1.12074 1.20208 1.00786 0.88735 1.03236 0.90682 0.90221 0.90941 0.74256 0.92230 0.93391 0.78729 0.91783 0.90981 0.93038 0.92567 0.96412 0.92850 0.93462 0.87660 0.94822 0.91266 0.90241 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.02 36.01 0.36 -0.52 16 2 C 0.05 0.75 6.68 -84.48 -0.56 0.19 16 3 N -0.41 -7.16 10.22 -7.69 -0.08 -7.23 16 4 C 0.00 0.00 7.46 -14.43 -0.11 -0.11 16 5 C 0.59 11.24 7.22 -12.59 -0.09 11.15 16 6 O -0.55 -10.68 13.20 5.26 0.07 -10.61 16 7 N -0.65 -13.13 4.03 -48.61 -0.20 -13.33 16 8 C 0.15 3.05 0.45 -131.70 -0.06 2.99 16 9 C 0.07 1.19 5.68 37.16 0.21 1.40 16 10 O -0.56 -10.15 12.98 -35.23 -0.46 -10.61 16 11 C -0.12 -2.22 4.52 -26.69 -0.12 -2.34 16 12 C -0.13 -2.40 5.93 -26.62 -0.16 -2.56 16 13 C 0.14 3.02 6.51 -3.71 -0.02 3.00 16 14 N -0.59 -14.47 2.85 -172.27 -0.49 -14.96 16 15 C -0.26 -6.95 9.58 -15.06 -0.14 -7.10 16 16 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 17 C 0.01 0.28 5.04 -17.43 -0.09 0.19 16 18 N -0.90 -25.76 11.09 55.49 0.62 -25.15 16 19 Si 0.90 21.71 29.57 -169.99 -5.03 16.68 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.18 4.18 3.76 -3.67 -0.01 4.17 16 24 S 0.22 2.86 23.00 -107.50 -2.47 0.39 16 25 C -0.26 -3.04 6.36 -35.72 -0.23 -3.26 16 26 C -0.07 -0.54 9.45 36.00 0.34 -0.20 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.60 7.33 -51.93 -0.38 0.22 16 30 H 0.42 9.25 8.09 -40.82 -0.33 8.92 16 31 H 0.06 1.06 6.16 -51.93 -0.32 0.74 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.37 4.76 9.12 45.56 0.42 5.17 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.32 6.25 -51.93 -0.32 1.00 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.11 7.53 -51.92 -0.39 0.72 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.11 2.85 5.88 -51.93 -0.31 2.55 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.52 7.93 -51.93 -0.41 0.10 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -31.55 372.58 -8.92 -40.47 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.81 Total: 11.73 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -0.69 Total: 6.99 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.15 Total: -60.67 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.39 Total: -21.21 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.47 Total: 0.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.55 -8.92 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501368015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.294 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds