Wall clock time and date at job start Tue Mar 31 2020 22:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30707 * 122.10951 * 2 1 4 4 C 1.30556 * 115.90791 * 180.20449 * 3 2 1 5 5 C 1.47253 * 125.54334 * 179.82401 * 4 3 2 6 6 O 1.21622 * 120.00261 * 179.69295 * 5 4 3 7 7 N 1.34783 * 119.99931 * 359.69266 * 5 4 3 8 8 C 1.46496 * 119.99968 * 174.88047 * 7 5 4 9 9 C 1.52998 * 109.49893 * 302.88484 * 8 7 5 10 10 O 1.42905 * 109.47034 * 300.68877 * 9 8 7 11 11 C 1.53049 * 109.49836 * 62.94978 * 8 7 5 12 12 C 1.53031 * 109.53611 * 58.58537 * 11 8 7 13 13 C 1.53187 * 109.31614 * 61.36600 * 12 11 8 14 14 N 1.46927 * 108.77438 * 305.36268 * 13 12 11 15 15 C 1.36933 * 120.62991 * 233.62481 * 14 13 12 16 16 H 1.07997 * 120.00353 * 31.66699 * 15 14 13 17 17 C 1.38813 * 119.99891 * 211.66576 * 15 14 13 18 18 N 1.31617 * 120.00095 * 11.00144 * 17 15 14 19 19 Si 1.86805 * 120.00076 * 191.00286 * 17 15 14 20 20 H 1.48499 * 109.47202 * 59.99807 * 19 17 15 21 21 H 1.48498 * 109.47501 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46920 * 300.00063 * 19 17 15 23 23 C 1.46996 * 118.75350 * 53.61137 * 14 13 12 24 24 S 1.76104 * 108.91397 * 359.55606 * 4 3 2 25 25 C 1.34234 * 122.10671 * 179.71172 * 2 1 3 26 26 C 1.50697 * 125.45633 * 0.04262 * 25 2 1 27 27 H 1.09004 * 109.46949 * 270.28848 * 1 2 3 28 28 H 1.08992 * 109.47021 * 30.28683 * 1 2 3 29 29 H 1.08991 * 109.47186 * 150.28863 * 1 2 3 30 30 H 0.97004 * 119.99772 * 354.87829 * 7 5 4 31 31 H 1.08998 * 109.47164 * 60.68834 * 9 8 7 32 32 H 1.08996 * 109.47348 * 180.68824 * 9 8 7 33 33 H 0.96702 * 113.99725 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.46120 * 178.60952 * 11 8 7 35 35 H 1.09001 * 109.45697 * 298.56839 * 11 8 7 36 36 H 1.09004 * 109.49875 * 181.32124 * 12 11 8 37 37 H 1.09007 * 109.50267 * 301.37884 * 12 11 8 38 38 H 1.08998 * 109.58852 * 65.14892 * 13 12 11 39 39 H 1.09002 * 109.59024 * 185.43554 * 13 12 11 40 40 H 0.97002 * 119.99794 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.62634 * 186.61770 * 23 14 13 42 42 H 1.08998 * 109.58300 * 66.16890 * 23 14 13 43 43 H 1.09004 * 109.47289 * 180.02562 * 26 25 2 44 44 H 1.09001 * 109.46840 * 299.99405 * 26 25 2 45 45 H 1.08996 * 109.47145 * 59.99667 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2018 1.1071 0.0000 4 6 3.4997 0.9661 -0.0042 5 6 4.4801 2.0648 -0.0088 6 8 5.6709 1.8173 -0.0068 7 7 4.0579 3.3447 -0.0151 8 6 5.0284 4.4367 0.0936 9 6 5.8460 4.2676 1.3757 10 8 4.9697 4.2778 2.5044 11 6 5.9648 4.4103 -1.1167 12 6 5.1445 4.5457 -2.4015 13 6 4.4051 5.8873 -2.3915 14 7 3.6134 5.9817 -1.1574 15 6 2.2725 6.2550 -1.2079 16 1 1.6837 5.9167 -2.0476 17 6 1.6701 6.9668 -0.1796 18 7 2.4111 7.5640 0.7296 19 14 -0.1923 7.0773 -0.0863 20 1 -0.7635 5.7123 0.0397 21 1 -0.5816 7.8883 1.0952 22 1 -0.7125 7.7195 -1.3201 23 6 4.2877 5.7771 0.1327 24 16 3.8873 -0.7517 0.0043 25 6 2.2205 -1.1370 0.0057 26 6 1.6453 -2.5299 0.0118 27 1 -0.3633 0.0052 1.0277 28 1 -0.3633 0.8873 -0.5182 29 1 -0.3633 -0.8925 -0.5093 30 1 3.1114 3.5428 -0.0916 31 1 6.3834 3.3199 1.3415 32 1 6.5596 5.0869 1.4623 33 1 5.4208 4.1752 3.3535 34 1 6.6709 5.2378 -1.0477 35 1 6.5112 3.4673 -1.1325 36 1 5.8096 4.5032 -3.2640 37 1 4.4216 3.7318 -2.4592 38 1 5.1274 6.7029 -2.4256 39 1 3.7451 5.9473 -3.2569 40 1 1.9901 8.0617 1.4479 41 1 3.5487 5.7630 0.9338 42 1 5.0004 6.5837 0.3043 43 1 2.4565 -3.2580 0.0162 44 1 1.0312 -2.6655 0.9021 45 1 1.0322 -2.6737 -0.8778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501368015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:10 Heat of formation + Delta-G solvation = -44.419461 kcal Electronic energy + Delta-G solvation = -28876.229681 eV Core-core repulsion = 25020.146594 eV Total energy + Delta-G solvation = -3856.083087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66558 -40.80383 -38.91086 -37.39021 -35.43999 -34.57642 -33.99336 -32.04517 -31.47744 -30.64802 -27.46037 -27.26916 -26.66537 -25.76162 -24.01156 -22.77171 -21.92834 -20.59808 -19.86009 -19.11636 -18.77663 -18.21049 -18.11244 -16.98912 -16.66403 -16.44112 -16.00074 -15.76128 -15.68020 -15.10082 -14.94110 -14.72846 -14.62416 -14.18025 -14.12543 -14.07227 -13.85513 -13.74583 -13.53390 -13.28225 -13.10875 -12.97857 -12.89740 -12.73536 -12.55225 -12.27566 -12.09194 -11.99992 -11.73764 -11.60087 -11.41355 -11.16449 -10.92912 -10.57801 -10.53642 -10.45949 -9.98505 -9.57990 -8.61542 -7.85092 -5.36021 -0.80623 0.09424 0.64686 1.27036 1.46239 1.49334 1.54842 2.16071 2.25212 2.51254 3.06051 3.30569 3.31187 3.65727 3.84641 3.91031 4.01615 4.06663 4.18298 4.23865 4.33281 4.45488 4.57661 4.63161 4.67931 4.75431 4.79230 4.79887 4.83450 4.87695 4.91060 4.95909 5.05920 5.08076 5.19195 5.30844 5.34352 5.46657 5.60345 5.66899 5.74945 6.40280 6.46313 6.65498 6.92063 7.10147 7.16663 7.84641 8.38711 9.19980 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.004793 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.255835 B = 5840.699613 C = 7268.853159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.020 3.980 3 N -0.440 5.440 4 C -0.056 4.056 5 C 0.596 3.404 6 O -0.560 6.560 7 N -0.662 5.662 8 C 0.155 3.845 9 C 0.073 3.927 10 O -0.581 6.581 11 C -0.115 4.115 12 C -0.118 4.118 13 C 0.141 3.859 14 N -0.605 5.605 15 C -0.263 4.263 16 H 0.062 0.938 17 C -0.038 4.038 18 N -0.927 5.927 19 Si 0.961 3.039 20 H -0.280 1.280 21 H -0.295 1.295 22 H -0.275 1.275 23 C 0.194 3.806 24 S 0.263 5.737 25 C -0.227 4.227 26 C -0.075 4.075 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.407 0.593 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.389 0.611 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.021 0.979 39 H 0.053 0.947 40 H 0.249 0.751 41 H 0.067 0.933 42 H 0.013 0.987 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -20.004 -0.368 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 N -0.159 5.159 4 C -0.329 4.329 5 C 0.379 3.621 6 O -0.440 6.440 7 N -0.310 5.310 8 C 0.067 3.933 9 C -0.006 4.006 10 O -0.388 6.388 11 C -0.153 4.153 12 C -0.157 4.157 13 C 0.015 3.985 14 N -0.328 5.328 15 C -0.393 4.393 16 H 0.079 0.921 17 C -0.235 4.235 18 N -0.572 5.572 19 Si 0.789 3.211 20 H -0.206 1.206 21 H -0.221 1.221 22 H -0.201 1.201 23 C 0.068 3.932 24 S 0.519 5.481 25 C -0.351 4.351 26 C -0.134 4.134 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.123 0.877 30 H 0.242 0.758 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.237 0.763 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.031 0.969 43 H 0.104 0.896 44 H 0.117 0.883 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.495 -19.946 -0.698 20.262 hybrid contribution -1.839 0.962 0.696 2.189 sum 1.656 -18.984 -0.002 19.056 Atomic orbital electron populations 1.20469 0.85368 1.04100 1.03634 1.20615 1.00048 0.85904 1.05115 1.66682 1.04316 1.33096 1.11787 1.27389 0.93487 0.98448 1.13590 1.16929 0.86412 0.82042 0.76738 1.90686 1.15633 1.84215 1.53505 1.45665 1.11653 1.03908 1.69775 1.21281 0.89544 0.88379 0.94112 1.22518 0.91723 1.01033 0.85365 1.86564 1.37940 1.96869 1.17402 1.21733 0.97273 1.02841 0.93475 1.21810 0.98563 0.97996 0.97315 1.21087 0.93686 0.94604 0.89095 1.44204 1.05394 1.82159 1.01032 1.19319 0.84826 1.28136 1.07049 0.92078 1.25800 1.01600 0.96887 0.99191 1.70098 1.35090 1.35863 1.16191 0.85454 0.81258 0.77501 0.76897 1.20582 1.22074 1.20109 1.20628 0.94494 0.89004 0.89101 1.83556 1.03278 0.98634 1.62638 1.26123 0.97874 1.03174 1.07898 1.20498 1.01837 0.85979 1.05061 0.89981 0.92076 0.87691 0.75805 0.91817 0.91933 0.76254 0.90586 0.90470 0.89935 0.93984 0.96120 0.92875 0.94151 0.91443 0.96942 0.89557 0.88287 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 10.02 71.24 0.71 -0.85 16 2 C 0.02 0.55 6.68 41.81 0.28 0.83 16 3 N -0.44 -15.38 10.22 -178.24 -1.82 -17.20 16 4 C -0.06 -1.93 7.46 87.25 0.65 -1.28 16 5 C 0.60 22.87 7.22 86.61 0.63 23.49 16 6 O -0.56 -21.68 13.20 -4.10 -0.05 -21.74 16 7 N -0.66 -27.40 4.03 -425.94 -1.72 -29.12 16 8 C 0.15 6.25 0.45 3.68 0.00 6.25 16 9 C 0.07 2.61 5.68 71.98 0.41 3.01 16 10 O -0.58 -21.53 12.98 -148.98 -1.93 -23.47 16 11 C -0.11 -4.13 4.52 30.62 0.14 -4.00 16 12 C -0.12 -4.27 5.93 30.67 0.18 -4.09 16 13 C 0.14 5.95 6.51 86.36 0.56 6.51 16 14 N -0.60 -30.45 2.85 -698.93 -1.99 -32.44 16 15 C -0.26 -14.52 9.58 84.03 0.80 -13.71 16 16 H 0.06 3.33 7.85 -2.91 -0.02 3.31 16 17 C -0.04 -2.16 5.04 84.86 0.43 -1.73 16 18 N -0.93 -55.03 11.09 21.65 0.24 -54.79 16 19 Si 0.96 45.71 29.57 68.60 2.03 47.74 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 C 0.19 9.50 3.76 86.35 0.32 9.83 16 24 S 0.26 6.45 23.00 -56.49 -1.30 5.15 16 25 C -0.23 -4.77 6.36 24.77 0.16 -4.61 16 26 C -0.07 -0.80 9.45 71.23 0.67 -0.13 16 27 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 1.38 7.33 -2.39 -0.02 1.37 16 30 H 0.41 18.85 8.09 -92.71 -0.75 18.10 16 31 H 0.06 2.24 6.16 -2.39 -0.01 2.23 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.39 10.08 9.12 -74.06 -0.68 9.41 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.08 2.74 6.25 -2.39 -0.01 2.73 16 36 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.04 1.65 7.53 -2.38 -0.02 1.63 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 2.21 7.94 -2.39 -0.02 2.19 16 40 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.07 3.84 5.88 -2.39 -0.01 3.82 16 42 H 0.01 0.65 8.14 -2.39 -0.02 0.64 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.10 0.78 7.93 -2.39 -0.02 0.77 16 Total: -1.00 -70.90 372.58 -0.99 -71.89 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.39 Total: 34.46 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 5.95 Total: 19.52 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -5.29 Total: -133.56 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.99 Total: -45.20 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 16 Polarization: 6.45 SS G_CDS: -1.30 Total: 5.15 kcal Total: -70.90 -0.99 -71.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501368015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.475 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds