Wall clock time and date at job start Tue Mar 31 2020 23:00:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30179 * 126.80512 * 2 1
4 4 O 1.20927 * 111.60367 * 180.26116 * 3 2 1
5 5 C 1.34037 * 111.56699 * 359.97438 * 4 3 2
6 6 C 1.35449 * 106.44977 * 0.02562 * 5 4 3
7 7 C 1.50702 * 128.00972 * 180.02562 * 6 5 4
8 8 N 1.46902 * 109.46936 * 259.95131 * 7 6 5
9 9 C 1.46902 * 110.99783 * 179.97438 * 8 7 6
10 10 C 1.53001 * 109.46907 * 180.02562 * 9 8 7
11 11 H 1.09004 * 112.84752 * 316.19101 * 10 9 8
12 12 C 1.53777 * 113.61911 * 87.49970 * 10 9 8
13 13 C 1.53784 * 87.08029 * 139.97800 * 12 10 9
14 14 H 1.09004 * 113.69518 * 220.00757 * 13 12 10
15 15 N 1.46500 * 113.61175 * 89.12030 * 13 12 10
16 16 C 1.34772 * 120.00435 * 107.50198 * 15 13 12
17 17 O 1.21287 * 119.99543 * 359.97438 * 16 15 13
18 18 C 1.50693 * 120.00415 * 179.97438 * 16 15 13
19 19 S 1.80999 * 109.47286 * 179.97438 * 18 16 15
20 20 C 1.76205 * 100.00133 * 180.02562 * 19 18 16
21 21 H 1.08000 * 119.99804 * 0.02562 * 20 19 18
22 22 C 1.38794 * 120.00045 * 179.97438 * 20 19 18
23 23 N 1.31628 * 120.00112 * 0.02562 * 22 20 19
24 24 Si 1.86803 * 119.99954 * 180.02562 * 22 20 19
25 25 H 1.48498 * 109.47097 * 60.00626 * 24 22 20
26 26 H 1.48501 * 109.47148 * 180.02562 * 24 22 20
27 27 H 1.48499 * 109.47380 * 300.00407 * 24 22 20
28 28 C 1.53785 * 113.61126 * 185.00436 * 10 9 8
29 29 H 1.08994 * 109.47179 * 269.68947 * 1 2 3
30 30 H 1.09004 * 109.47024 * 29.68702 * 1 2 3
31 31 H 1.08997 * 109.47289 * 149.68577 * 1 2 3
32 32 H 1.08002 * 126.77549 * 180.02562 * 5 4 3
33 33 H 1.08998 * 109.47164 * 19.95134 * 7 6 5
34 34 H 1.09003 * 109.47239 * 139.95329 * 7 6 5
35 35 H 1.00906 * 110.99895 * 56.04902 * 8 7 6
36 36 H 1.08999 * 109.47007 * 300.00293 * 9 8 7
37 37 H 1.08993 * 109.47319 * 60.00178 * 9 8 7
38 38 H 1.08994 * 113.62022 * 254.52870 * 12 10 9
39 39 H 1.09006 * 113.60901 * 25.43478 * 12 10 9
40 40 H 0.97003 * 119.99933 * 287.50527 * 15 13 12
41 41 H 1.09001 * 109.47473 * 300.00589 * 18 16 15
42 42 H 1.09005 * 109.47066 * 60.00061 * 18 16 15
43 43 H 0.97006 * 120.00372 * 179.97438 * 23 22 20
44 44 H 1.08996 * 113.61464 * 334.56023 * 28 10 9
45 45 H 1.08996 * 113.61874 * 105.38732 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2869 1.0423 0.0000
4 8 3.4538 0.7252 -0.0051
5 6 3.6024 -0.6069 -0.0087
6 6 2.3539 -1.1321 -0.0058
7 6 1.9589 -2.5864 -0.0074
8 7 1.5931 -2.9930 -1.3708
9 6 1.2021 -4.4084 -1.4110
10 6 0.8295 -4.7940 -2.8440
11 1 0.2082 -4.0455 -3.3358
12 6 2.0286 -5.2542 -3.6897
13 6 1.1012 -6.3320 -4.2756
14 1 1.5848 -7.2994 -4.4113
15 7 0.3671 -5.8914 -5.4644
16 6 0.7053 -6.3658 -6.6797
17 8 1.6178 -7.1572 -6.7892
18 6 -0.0501 -5.9129 -7.9024
19 16 0.6364 -6.7208 -9.3694
20 6 -0.4025 -6.0299 -10.6137
21 1 -1.1780 -5.3292 -10.3417
22 6 -0.2233 -6.3852 -11.9433
23 7 0.7223 -7.2388 -12.2748
24 14 -1.3242 -5.6522 -13.2625
25 1 -1.1789 -4.1743 -13.2635
26 1 -0.9314 -6.1895 -14.5899
27 1 -2.7380 -6.0103 -12.9827
28 6 0.2873 -6.2272 -2.9750
29 1 -0.3633 -0.0056 1.0276
30 1 -0.3633 0.8928 -0.5090
31 1 -0.3634 -0.8871 -0.5187
32 1 4.5338 -1.1536 -0.0131
33 1 2.7970 -3.1909 0.3394
34 1 1.1066 -2.7322 0.6562
35 1 2.3451 -2.8074 -2.0175
36 1 2.0352 -5.0252 -1.0740
37 1 0.3447 -4.5672 -0.7571
38 1 2.3563 -4.5156 -4.4211
39 1 2.8499 -5.6594 -3.0986
40 1 -0.3624 -5.2580 -5.3769
41 1 -1.1020 -6.1795 -7.7991
42 1 0.0421 -4.8318 -8.0068
43 1 0.8472 -7.4875 -13.2041
44 1 0.6326 -6.8982 -2.1886
45 1 -0.7908 -6.2739 -3.1282
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001506875063.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:00:09
Heat of formation + Delta-G solvation = 38.925690 kcal
Electronic energy + Delta-G solvation = -25395.328897 eV
Core-core repulsion = 21542.859927 eV
Total energy + Delta-G solvation = -3852.468970 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-45.30286 -40.22183 -38.33392 -36.87288 -34.76819 -33.15689 -32.42965 -32.19326
-29.47694 -29.03126 -28.01726 -25.99297 -25.51934 -25.12007 -22.38243 -21.86278
-21.68330 -20.80835 -19.27124 -17.96396 -17.91462 -17.81107 -16.69389 -16.26872
-16.02030 -15.40586 -15.13260 -15.01882 -14.80458 -14.75549 -14.27894 -14.00895
-13.67707 -13.56759 -13.40576 -13.14166 -13.12863 -12.83338 -12.72444 -12.55376
-12.36333 -12.20697 -11.73337 -11.45952 -11.17177 -11.04709 -11.03845 -10.77107
-10.67963 -10.39453 -10.20174 -9.92319 -9.81911 -9.42099 -9.06405 -8.93505
-8.87993 -8.24641 -6.50388 -6.21635 -3.92408 1.07642 1.78987 2.85362
3.00949 3.05353 3.23653 3.27515 3.30857 3.64326 3.69430 3.89974
4.13179 4.20451 4.26039 4.35997 4.39877 4.63122 4.65765 4.71895
4.96599 5.03193 5.06531 5.12886 5.13455 5.14374 5.16031 5.26747
5.35384 5.38746 5.46009 5.46815 5.51783 5.57612 5.78051 5.82176
5.84412 5.86994 5.90561 6.08735 6.13773 6.49657 6.70256 6.86740
7.59201 7.70488 7.90125 8.34933 8.60317 9.23539 10.85688
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.015090 B = 0.001706 C = 0.001607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1855.050565 B =16406.384711 C =17422.252940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.037 3.963
3 N -0.370 5.370
4 O 0.097 5.903
5 C -0.054 4.054
6 C -0.199 4.199
7 C 0.136 3.864
8 N -0.685 5.685
9 C 0.070 3.930
10 C -0.108 4.108
11 H 0.099 0.901
12 C -0.153 4.153
13 C 0.125 3.875
14 H 0.101 0.899
15 N -0.721 5.721
16 C 0.534 3.466
17 O -0.517 6.517
18 C -0.154 4.154
19 S -0.060 6.060
20 C -0.536 4.536
21 H 0.072 0.928
22 C 0.074 3.926
23 N -0.868 5.868
24 Si 0.919 3.081
25 H -0.274 1.274
26 H -0.283 1.283
27 H -0.274 1.274
28 C -0.140 4.140
29 H 0.076 0.924
30 H 0.074 0.926
31 H 0.090 0.910
32 H 0.214 0.786
33 H 0.044 0.956
34 H 0.086 0.914
35 H 0.345 0.655
36 H 0.034 0.966
37 H 0.074 0.926
38 H 0.072 0.928
39 H 0.085 0.915
40 H 0.398 0.602
41 H 0.090 0.910
42 H 0.090 0.910
43 H 0.269 0.731
44 H 0.092 0.908
45 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.132 9.772 29.765 31.348
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.123 4.123
3 N -0.076 5.076
4 O 0.033 5.967
5 C -0.137 4.137
6 C -0.204 4.204
7 C 0.007 3.993
8 N -0.316 5.316
9 C -0.059 4.059
10 C -0.127 4.127
11 H 0.117 0.883
12 C -0.191 4.191
13 C 0.019 3.981
14 H 0.119 0.881
15 N -0.374 5.374
16 C 0.321 3.679
17 O -0.391 6.391
18 C -0.304 4.304
19 S 0.167 5.833
20 C -0.684 4.684
21 H 0.090 0.910
22 C -0.136 4.136
23 N -0.503 5.503
24 Si 0.745 3.255
25 H -0.199 1.199
26 H -0.208 1.208
27 H -0.199 1.199
28 C -0.179 4.179
29 H 0.095 0.905
30 H 0.093 0.907
31 H 0.109 0.891
32 H 0.231 0.769
33 H 0.062 0.938
34 H 0.104 0.896
35 H 0.163 0.837
36 H 0.052 0.948
37 H 0.092 0.908
38 H 0.091 0.909
39 H 0.104 0.896
40 H 0.233 0.767
41 H 0.108 0.892
42 H 0.108 0.892
43 H 0.079 0.921
44 H 0.110 0.890
45 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 1.893 9.881 29.480 31.150
hybrid contribution -1.172 0.444 -0.572 1.378
sum 0.721 10.326 28.908 30.705
Atomic orbital electron populations
1.20194 0.85819 1.04383 1.03080 1.23525 0.99152 0.88059 1.01549
1.73882 0.89419 1.24301 1.20002 1.84839 1.21667 1.22842 1.67339
1.25853 1.00689 0.83953 1.03157 1.21184 0.92136 0.97496 1.09543
1.20083 0.99905 0.87731 0.91566 1.60474 1.44875 1.19796 1.06458
1.21979 0.99734 0.87129 0.97048 1.22635 0.98381 0.96753 0.94926
0.88280 1.23542 0.96838 0.99398 0.99365 1.21671 0.93404 0.98722
0.84317 0.88090 1.45700 1.37455 1.48483 1.05773 1.20331 0.83591
0.80269 0.83727 1.90698 1.29521 1.33165 1.85686 1.23534 1.03195
1.05082 0.98624 1.85390 1.46094 1.58513 0.93322 1.22828 1.20605
1.31509 0.93499 0.90967 1.24992 0.95743 0.94944 0.97905 1.70007
1.30476 1.31124 1.18684 0.86223 0.80246 0.79291 0.79738 1.19930
1.20812 1.19936 1.23335 1.00641 0.96490 0.97433 0.90512 0.90670
0.89092 0.76928 0.93824 0.89565 0.83694 0.94817 0.90762 0.90882
0.89644 0.76748 0.89188 0.89203 0.92126 0.88991 0.90680
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.50 10.39 36.00 0.37 -0.13 16
2 C 0.04 0.32 7.33 -82.10 -0.60 -0.29 16
3 N -0.37 -3.84 12.07 33.43 0.40 -3.44 16
4 O 0.10 0.85 11.20 17.18 0.19 1.04 16
5 C -0.05 -0.31 12.26 29.74 0.36 0.05 16
6 C -0.20 -1.34 5.84 -104.42 -0.61 -1.95 16
7 C 0.14 0.70 6.17 -4.97 -0.03 0.67 16
8 N -0.68 -4.11 6.49 -115.06 -0.75 -4.85 16
9 C 0.07 0.39 5.52 -3.82 -0.02 0.37 16
10 C -0.11 -0.74 3.78 -89.81 -0.34 -1.08 16
11 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16
12 C -0.15 -1.35 7.43 -25.92 -0.19 -1.54 16
13 C 0.13 1.36 4.32 -67.11 -0.29 1.07 16
14 H 0.10 1.32 7.46 -51.93 -0.39 0.93 16
15 N -0.72 -9.24 5.26 -53.01 -0.28 -9.52 16
16 C 0.53 9.79 7.85 -10.99 -0.09 9.70 16
17 O -0.52 -11.59 15.46 5.55 0.09 -11.51 16
18 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16
19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16
20 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16
21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16
22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
23 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16
24 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16
25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
28 C -0.14 -1.03 7.39 -25.91 -0.19 -1.22 16
29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16
30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
31 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16
32 H 0.21 0.39 8.06 -52.49 -0.42 -0.03 16
33 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16
34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16
35 H 0.34 2.19 8.72 -39.29 -0.34 1.85 16
36 H 0.03 0.18 7.84 -51.93 -0.41 -0.23 16
37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
39 H 0.09 0.67 7.90 -51.93 -0.41 0.26 16
40 H 0.40 4.03 8.70 -40.82 -0.36 3.68 16
41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16
42 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16
43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16
44 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16
45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
LS Contribution 397.04 15.07 5.98 5.98
Total: -1.00 -35.53 397.04 -9.01 -44.53
By element:
Atomic # 1 Polarization: 7.72 SS G_CDS: -6.94 Total: 0.77 kcal
Atomic # 6 Polarization: -8.94 SS G_CDS: -1.20 Total: -10.15 kcal
Atomic # 7 Polarization: -43.33 SS G_CDS: 0.11 Total: -43.22 kcal
Atomic # 8 Polarization: -10.74 SS G_CDS: 0.28 Total: -10.47 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal
Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -35.53 -9.01 -44.53 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001506875063.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.461 kcal
(2) G-P(sol) polarization free energy of solvation -35.528 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.933 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.535 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.926 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds