Wall clock time and date at job start Tue Mar 31 2020 23:00:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30179 * 126.80512 * 2 1
4 4 O 1.20927 * 111.60367 * 180.26116 * 3 2 1
5 5 C 1.34037 * 111.56699 * 359.97438 * 4 3 2
6 6 C 1.35449 * 106.44977 * 0.02562 * 5 4 3
7 7 C 1.50702 * 128.00972 * 180.02562 * 6 5 4
8 8 N 1.46902 * 109.46936 * 259.95131 * 7 6 5
9 9 C 1.46902 * 110.99783 * 179.97438 * 8 7 6
10 10 C 1.53001 * 109.46907 * 180.02562 * 9 8 7
11 11 H 1.09004 * 112.84752 * 316.19101 * 10 9 8
12 12 C 1.53777 * 113.61911 * 87.49970 * 10 9 8
13 13 C 1.53784 * 87.08029 * 139.97800 * 12 10 9
14 14 H 1.09004 * 113.69518 * 220.00757 * 13 12 10
15 15 N 1.46500 * 113.61175 * 89.12030 * 13 12 10
16 16 C 1.34772 * 120.00435 * 107.50198 * 15 13 12
17 17 O 1.21287 * 119.99543 * 359.97438 * 16 15 13
18 18 C 1.50693 * 120.00415 * 179.97438 * 16 15 13
19 19 S 1.80999 * 109.47286 * 179.97438 * 18 16 15
20 20 C 1.76205 * 100.00133 * 180.02562 * 19 18 16
21 21 H 1.08000 * 119.99804 * 0.02562 * 20 19 18
22 22 C 1.38794 * 120.00045 * 179.97438 * 20 19 18
23 23 N 1.31628 * 120.00112 * 0.02562 * 22 20 19
24 24 Si 1.86803 * 119.99954 * 180.02562 * 22 20 19
25 25 H 1.48498 * 109.47097 * 60.00626 * 24 22 20
26 26 H 1.48501 * 109.47148 * 180.02562 * 24 22 20
27 27 H 1.48499 * 109.47380 * 300.00407 * 24 22 20
28 28 C 1.53785 * 113.61126 * 185.00436 * 10 9 8
29 29 H 1.08994 * 109.47179 * 269.68947 * 1 2 3
30 30 H 1.09004 * 109.47024 * 29.68702 * 1 2 3
31 31 H 1.08997 * 109.47289 * 149.68577 * 1 2 3
32 32 H 1.08002 * 126.77549 * 180.02562 * 5 4 3
33 33 H 1.08998 * 109.47164 * 19.95134 * 7 6 5
34 34 H 1.09003 * 109.47239 * 139.95329 * 7 6 5
35 35 H 1.00906 * 110.99895 * 56.04902 * 8 7 6
36 36 H 1.08999 * 109.47007 * 300.00293 * 9 8 7
37 37 H 1.08993 * 109.47319 * 60.00178 * 9 8 7
38 38 H 1.08994 * 113.62022 * 254.52870 * 12 10 9
39 39 H 1.09006 * 113.60901 * 25.43478 * 12 10 9
40 40 H 0.97003 * 119.99933 * 287.50527 * 15 13 12
41 41 H 1.09001 * 109.47473 * 300.00589 * 18 16 15
42 42 H 1.09005 * 109.47066 * 60.00061 * 18 16 15
43 43 H 0.97006 * 120.00372 * 179.97438 * 23 22 20
44 44 H 1.08996 * 113.61464 * 334.56023 * 28 10 9
45 45 H 1.08996 * 113.61874 * 105.38732 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2869 1.0423 0.0000
4 8 3.4538 0.7252 -0.0051
5 6 3.6024 -0.6069 -0.0087
6 6 2.3539 -1.1321 -0.0058
7 6 1.9589 -2.5864 -0.0074
8 7 1.5931 -2.9930 -1.3708
9 6 1.2021 -4.4084 -1.4110
10 6 0.8295 -4.7940 -2.8440
11 1 0.2082 -4.0455 -3.3358
12 6 2.0286 -5.2542 -3.6897
13 6 1.1012 -6.3320 -4.2756
14 1 1.5848 -7.2994 -4.4113
15 7 0.3671 -5.8914 -5.4644
16 6 0.7053 -6.3658 -6.6797
17 8 1.6178 -7.1572 -6.7892
18 6 -0.0501 -5.9129 -7.9024
19 16 0.6364 -6.7208 -9.3694
20 6 -0.4025 -6.0299 -10.6137
21 1 -1.1780 -5.3292 -10.3417
22 6 -0.2233 -6.3852 -11.9433
23 7 0.7223 -7.2388 -12.2748
24 14 -1.3242 -5.6522 -13.2625
25 1 -1.1789 -4.1743 -13.2635
26 1 -0.9314 -6.1895 -14.5899
27 1 -2.7380 -6.0103 -12.9827
28 6 0.2873 -6.2272 -2.9750
29 1 -0.3633 -0.0056 1.0276
30 1 -0.3633 0.8928 -0.5090
31 1 -0.3634 -0.8871 -0.5187
32 1 4.5338 -1.1536 -0.0131
33 1 2.7970 -3.1909 0.3394
34 1 1.1066 -2.7322 0.6562
35 1 2.3451 -2.8074 -2.0175
36 1 2.0352 -5.0252 -1.0740
37 1 0.3447 -4.5672 -0.7571
38 1 2.3563 -4.5156 -4.4211
39 1 2.8499 -5.6594 -3.0986
40 1 -0.3624 -5.2580 -5.3769
41 1 -1.1020 -6.1795 -7.7991
42 1 0.0421 -4.8318 -8.0068
43 1 0.8472 -7.4875 -13.2041
44 1 0.6326 -6.8982 -2.1886
45 1 -0.7908 -6.2739 -3.1282
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001506875063.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:00:08
Heat of formation + Delta-G solvation = 13.229216 kcal
Electronic energy + Delta-G solvation = -25396.443180 eV
Core-core repulsion = 21542.859927 eV
Total energy + Delta-G solvation = -3853.583253 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-45.87763 -41.21691 -39.46781 -37.42350 -35.38411 -34.58886 -34.23993 -32.80807
-30.80391 -29.62152 -28.71130 -27.65769 -26.65132 -25.74008 -23.05438 -22.40681
-22.19235 -22.05576 -20.12394 -19.82133 -18.55364 -18.42961 -17.90485 -17.10612
-16.96488 -16.87660 -16.42353 -16.09310 -15.78161 -15.62083 -15.38036 -14.88669
-14.60076 -14.52715 -14.23934 -14.12493 -13.98353 -13.76346 -13.48412 -13.31919
-13.29975 -13.17090 -12.86980 -12.80189 -12.64553 -12.58168 -12.02302 -11.80382
-11.70785 -11.40398 -11.12975 -11.05951 -10.94387 -10.78039 -10.43442 -10.28433
-10.01432 -9.32537 -8.66898 -8.34539 -6.12808 0.58900 1.24317 1.26780
1.43939 1.46734 1.56627 1.60029 2.25894 2.29968 2.43340 2.99374
3.17694 3.31995 3.40456 3.59514 3.66159 3.79131 3.91524 3.94316
4.01133 4.07668 4.20113 4.30636 4.49913 4.51732 4.60139 4.62954
4.66102 4.69967 4.79488 4.82139 4.84846 4.93138 4.94511 4.96771
5.04111 5.12665 5.24136 5.29657 5.35940 5.41544 5.70322 6.10311
6.19560 6.43144 6.52563 7.06541 7.26376 7.36477 8.74349
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.015090 B = 0.001706 C = 0.001607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1855.050565 B =16406.384711 C =17422.252940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.022 3.978
3 N -0.409 5.409
4 O 0.080 5.920
5 C -0.044 4.044
6 C -0.209 4.209
7 C 0.142 3.858
8 N -0.694 5.694
9 C 0.076 3.924
10 C -0.093 4.093
11 H 0.094 0.906
12 C -0.147 4.147
13 C 0.103 3.897
14 H 0.075 0.925
15 N -0.695 5.695
16 C 0.536 3.464
17 O -0.566 6.566
18 C -0.130 4.130
19 S -0.151 6.151
20 C -0.547 4.547
21 H 0.083 0.917
22 C 0.013 3.987
23 N -0.911 5.911
24 Si 0.998 3.002
25 H -0.262 1.262
26 H -0.279 1.279
27 H -0.262 1.262
28 C -0.122 4.122
29 H 0.089 0.911
30 H 0.068 0.932
31 H 0.096 0.904
32 H 0.252 0.748
33 H 0.060 0.940
34 H 0.091 0.909
35 H 0.342 0.658
36 H 0.043 0.957
37 H 0.084 0.916
38 H 0.054 0.946
39 H 0.098 0.902
40 H 0.415 0.585
41 H 0.110 0.890
42 H 0.108 0.892
43 H 0.271 0.729
44 H 0.111 0.889
45 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.278 10.533 31.496 33.212
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.137 4.137
3 N -0.119 5.119
4 O 0.019 5.981
5 C -0.126 4.126
6 C -0.213 4.213
7 C 0.013 3.987
8 N -0.325 5.325
9 C -0.053 4.053
10 C -0.111 4.111
11 H 0.113 0.887
12 C -0.186 4.186
13 C -0.003 4.003
14 H 0.093 0.907
15 N -0.348 5.348
16 C 0.322 3.678
17 O -0.445 6.445
18 C -0.281 4.281
19 S 0.076 5.924
20 C -0.695 4.695
21 H 0.101 0.899
22 C -0.192 4.192
23 N -0.547 5.547
24 Si 0.820 3.180
25 H -0.187 1.187
26 H -0.204 1.204
27 H -0.186 1.186
28 C -0.160 4.160
29 H 0.107 0.893
30 H 0.087 0.913
31 H 0.115 0.885
32 H 0.268 0.732
33 H 0.079 0.921
34 H 0.109 0.891
35 H 0.160 0.840
36 H 0.061 0.939
37 H 0.102 0.898
38 H 0.073 0.927
39 H 0.116 0.884
40 H 0.252 0.748
41 H 0.128 0.872
42 H 0.126 0.874
43 H 0.080 0.920
44 H 0.129 0.871
45 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 0.462 10.674 31.273 33.048
hybrid contribution -0.698 0.204 -0.969 1.212
sum -0.236 10.878 30.304 32.198
Atomic orbital electron populations
1.20235 0.84849 1.04285 1.03867 1.24004 1.00120 0.88558 1.00992
1.73878 0.90188 1.25700 1.22088 1.84785 1.21213 1.24410 1.67728
1.26600 1.02048 0.82892 1.01047 1.21424 0.92058 0.97934 1.09873
1.20096 1.00740 0.86743 0.91137 1.60458 1.45026 1.20070 1.06936
1.21919 1.00443 0.87027 0.95904 1.22492 0.96770 0.96344 0.95543
0.88727 1.23523 0.97699 0.98072 0.99283 1.21983 0.95197 0.98329
0.84763 0.90670 1.45436 1.37288 1.47389 1.04678 1.20057 0.82917
0.80028 0.84806 1.90685 1.31696 1.35642 1.86442 1.23375 1.03790
1.05145 0.95814 1.85564 1.48206 1.60777 0.97836 1.23174 1.20706
1.31619 0.94022 0.89916 1.26134 0.97262 0.95199 1.00604 1.70176
1.32497 1.32747 1.19295 0.85006 0.78217 0.78695 0.76092 1.18705
1.20390 1.18611 1.23285 1.00596 0.97010 0.95142 0.89268 0.91335
0.88498 0.73218 0.92147 0.89111 0.84019 0.93921 0.89803 0.92672
0.88362 0.74777 0.87177 0.87359 0.91988 0.87110 0.89894
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.90 10.39 71.23 0.74 -0.16 16
2 C 0.02 0.37 7.33 43.58 0.32 0.69 16
3 N -0.41 -8.51 12.07 -49.54 -0.60 -9.10 16
4 O 0.08 1.37 11.20 71.65 0.80 2.17 16
5 C -0.04 -0.43 12.26 67.17 0.82 0.39 16
6 C -0.21 -2.42 5.84 -19.73 -0.12 -2.54 16
7 C 0.14 1.05 6.17 85.56 0.53 1.57 16
8 N -0.69 -6.36 6.49 -517.93 -3.36 -9.72 16
9 C 0.08 0.57 5.52 86.30 0.48 1.05 16
10 C -0.09 -1.00 3.78 -10.27 -0.04 -1.04 16
11 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16
12 C -0.15 -2.34 7.43 31.12 0.23 -2.11 16
13 C 0.10 2.10 4.32 45.52 0.20 2.30 16
14 H 0.08 1.97 7.46 -2.38 -0.02 1.95 16
15 N -0.69 -16.90 5.26 -440.03 -2.32 -19.22 16
16 C 0.54 19.59 7.85 87.66 0.69 20.28 16
17 O -0.57 -26.22 15.46 -3.05 -0.05 -26.27 16
18 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16
19 S -0.15 -8.40 20.57 -56.49 -1.16 -9.57 16
20 C -0.55 -31.32 9.50 67.95 0.65 -30.67 16
21 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16
22 C 0.01 0.73 5.49 84.86 0.47 1.20 16
23 N -0.91 -56.07 13.22 21.65 0.29 -55.79 16
24 Si 1.00 43.61 29.55 68.60 2.03 45.64 16
25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16
26 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16
27 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16
28 C -0.12 -1.41 7.39 31.12 0.23 -1.18 16
29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16
30 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16
31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16
32 H 0.25 0.13 8.06 -2.91 -0.02 0.11 16
33 H 0.06 0.26 8.14 -2.39 -0.02 0.25 16
34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16
35 H 0.34 3.50 8.72 -89.69 -0.78 2.71 16
36 H 0.04 0.28 7.84 -2.39 -0.02 0.26 16
37 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16
38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
39 H 0.10 1.33 7.90 -2.38 -0.02 1.31 16
40 H 0.42 7.39 8.70 -92.71 -0.81 6.59 16
41 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16
42 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16
43 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16
44 H 0.11 0.95 8.10 -2.39 -0.02 0.93 16
45 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16
Total: -1.00 -81.13 397.04 0.69 -80.44
By element:
Atomic # 1 Polarization: 16.91 SS G_CDS: -0.57 Total: 16.34 kcal
Atomic # 6 Polarization: -20.55 SS G_CDS: 5.63 Total: -14.92 kcal
Atomic # 7 Polarization: -87.84 SS G_CDS: -5.99 Total: -93.83 kcal
Atomic # 8 Polarization: -24.86 SS G_CDS: 0.76 Total: -24.10 kcal
Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal
Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.57 kcal
Total: -81.13 0.69 -80.44 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001506875063.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.673 kcal
(2) G-P(sol) polarization free energy of solvation -81.132 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.542 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.444 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.229 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds