Wall clock time and date at job start Tue Mar 31 2020 23:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47093 * 2 1 4 4 N 1.30172 * 126.80143 * 274.88943 * 3 2 1 5 5 O 1.20924 * 111.59924 * 179.79822 * 4 3 2 6 6 C 1.34037 * 111.56868 * 0.48203 * 5 4 3 7 7 C 1.35445 * 106.44857 * 359.71014 * 6 5 4 8 8 C 1.50696 * 128.00647 * 180.02562 * 7 6 5 9 9 N 1.46906 * 109.47086 * 103.07406 * 8 7 6 10 10 C 1.47841 * 110.99567 * 285.85437 * 9 8 7 11 11 C 1.54911 * 104.79347 * 213.63340 * 10 9 8 12 12 C 1.55141 * 101.65184 * 37.07250 * 11 10 9 13 13 H 1.09001 * 110.70501 * 82.72905 * 12 11 10 14 14 N 1.46501 * 110.70560 * 205.96087 * 12 11 10 15 15 C 1.34772 * 119.99848 * 268.59851 * 14 12 11 16 16 O 1.21278 * 120.00212 * 0.02562 * 15 14 12 17 17 C 1.50707 * 119.99819 * 179.97438 * 15 14 12 18 18 S 1.80998 * 109.47219 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00008 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00108 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00004 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99718 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99959 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47185 * 90.00092 * 23 21 19 25 25 H 1.48501 * 109.46935 * 210.00252 * 23 21 19 26 26 H 1.48502 * 109.47361 * 329.99938 * 23 21 19 27 27 C 1.47438 * 110.99785 * 165.00945 * 9 8 7 28 28 H 1.08991 * 109.47461 * 299.99918 * 1 2 3 29 29 H 1.09003 * 109.46705 * 60.00440 * 1 2 3 30 30 H 1.09001 * 109.46761 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46940 * 119.99926 * 2 1 3 32 32 H 1.08997 * 109.47707 * 239.99694 * 2 1 3 33 33 H 1.08002 * 126.77226 * 179.68585 * 6 5 4 34 34 H 1.09001 * 109.46872 * 223.07057 * 8 7 6 35 35 H 1.08997 * 109.47377 * 343.07140 * 8 7 6 36 36 H 1.08995 * 110.37694 * 332.46816 * 10 9 8 37 37 H 1.09003 * 110.37587 * 94.81034 * 10 9 8 38 38 H 1.09003 * 110.99169 * 278.98229 * 11 10 9 39 39 H 1.09001 * 111.02187 * 155.17545 * 11 10 9 40 40 H 0.96999 * 119.99423 * 88.60243 * 14 12 11 41 41 H 1.08999 * 109.46730 * 300.00620 * 17 15 14 42 42 H 1.08994 * 109.46600 * 60.00101 * 17 15 14 43 43 H 0.96998 * 119.99318 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.89218 * 242.65899 * 27 9 8 45 45 H 1.09001 * 109.89206 * 3.69447 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2085 2.1856 -1.0385 5 8 2.6192 3.2781 -0.7222 6 6 2.7827 3.3780 0.6044 7 6 2.4114 2.1851 1.1274 8 6 2.4036 1.7691 2.5758 9 7 1.0265 1.7989 3.0865 10 6 0.5696 3.1891 3.2971 11 6 -0.3690 3.1149 4.5273 12 6 0.3485 2.0561 5.4054 13 1 1.1505 2.5147 5.9839 14 7 -0.6070 1.3807 6.2869 15 6 -0.8387 1.8619 7.5244 16 8 -0.2564 2.8542 7.9080 17 6 -1.8221 1.1674 8.4310 18 16 -1.9121 2.0472 10.0102 19 6 -3.0972 1.0492 10.8493 20 1 -3.5244 0.1885 10.3562 21 6 -3.4817 1.3692 12.1440 22 7 -2.9615 2.4185 12.7447 23 14 -4.7376 0.3107 13.0338 24 1 -4.0383 -0.7702 13.7740 25 1 -5.5037 1.1499 13.9899 26 1 -5.6692 -0.2890 12.0450 27 6 0.9209 1.0712 4.3644 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 3.1402 4.2396 1.1487 34 1 2.8026 0.7587 2.6657 35 1 3.0207 2.4562 3.1546 36 1 1.4185 3.8400 3.5062 37 1 0.0232 3.5455 2.4239 38 1 -1.3637 2.7743 4.2395 39 1 -0.4203 4.0762 5.0385 40 1 -1.0729 0.5873 5.9799 41 1 -2.8061 1.1609 7.9624 42 1 -1.4952 0.1421 8.6040 43 1 -3.2305 2.6423 13.6494 44 1 0.2501 0.2194 4.2518 45 1 1.9067 0.7278 4.6781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566655188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:14 Heat of formation + Delta-G solvation = 24.848688 kcal Electronic energy + Delta-G solvation = -26276.681290 eV Core-core repulsion = 22423.601896 eV Total energy + Delta-G solvation = -3853.079395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.23464 -40.01559 -38.53390 -36.07758 -34.47401 -32.92080 -32.45209 -31.34558 -30.89933 -29.62705 -28.09185 -26.17001 -25.47296 -24.75508 -22.19787 -21.56209 -21.27246 -20.89950 -20.41235 -17.96206 -17.86938 -17.71135 -16.70517 -16.56183 -15.88722 -15.39907 -15.11966 -14.86085 -14.82188 -14.67624 -14.23544 -13.97767 -13.86784 -13.61687 -13.24621 -13.02499 -12.84299 -12.72704 -12.46967 -12.34475 -12.10163 -11.82907 -11.80651 -11.63271 -11.49640 -11.13497 -11.09077 -11.05349 -11.03887 -10.78223 -10.18825 -9.85209 -9.82603 -9.46410 -9.09541 -8.96193 -8.76388 -8.27027 -6.53017 -6.24178 -3.94934 1.15664 1.87207 2.91305 2.97291 3.01580 3.20644 3.25610 3.29363 3.53864 3.72841 3.86772 4.17348 4.18095 4.29767 4.34940 4.60767 4.63307 4.84553 4.93116 4.96277 4.98363 5.02073 5.09125 5.11136 5.12215 5.16784 5.24846 5.33307 5.35342 5.52316 5.57131 5.58370 5.68757 5.70770 5.80371 5.83865 5.86560 5.97291 5.99749 6.10641 6.49181 6.57447 6.58919 7.57258 7.64170 7.97460 8.32826 8.54862 9.21295 10.83237 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.001791 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.650553 B =15627.090812 C =16178.277323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 C 0.041 3.959 4 N -0.370 5.370 5 O 0.095 5.905 6 C -0.057 4.057 7 C -0.187 4.187 8 C 0.125 3.875 9 N -0.519 5.519 10 C 0.045 3.955 11 C -0.141 4.141 12 C 0.128 3.872 13 H 0.096 0.904 14 N -0.729 5.729 15 C 0.534 3.466 16 O -0.517 6.517 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.038 3.962 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.213 0.787 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.400 0.600 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.086 0.914 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.006 -3.158 -25.699 28.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.119 4.119 4 N -0.075 5.075 5 O 0.032 5.968 6 C -0.139 4.139 7 C -0.192 4.192 8 C -0.004 4.004 9 N -0.243 5.243 10 C -0.082 4.082 11 C -0.180 4.180 12 C 0.021 3.979 13 H 0.114 0.886 14 N -0.383 5.383 15 C 0.320 3.680 16 O -0.391 6.391 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.091 4.091 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.229 0.771 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.234 0.766 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.514 -1.785 -26.576 29.018 hybrid contribution -1.091 -1.762 1.437 2.522 sum 10.423 -3.547 -25.139 27.444 Atomic orbital electron populations 1.21703 0.93557 1.02144 1.02927 1.19882 0.96901 0.87892 1.03153 1.23475 1.00953 0.99310 0.88153 1.73849 1.16604 0.92779 1.24278 1.84829 1.61520 1.27220 1.23268 1.25808 1.03452 1.00582 0.84053 1.21087 1.06612 0.94204 0.97258 1.20502 0.89756 1.01771 0.88323 1.63563 1.20821 1.13549 1.26383 1.23043 0.98091 0.88791 0.98316 1.23145 0.99484 1.00355 0.95058 1.22062 0.92384 0.92835 0.90589 0.88560 1.45948 1.45351 1.32090 1.14934 1.20342 0.82319 0.84267 0.81049 1.90698 1.49166 1.25156 1.74097 1.23532 1.00131 1.04073 1.02680 1.85391 1.56587 1.37752 1.03664 1.22863 1.28066 1.15282 1.02171 0.90908 1.24998 0.96698 0.95527 0.96397 1.70018 1.41651 1.25039 1.13565 0.86162 0.80412 0.79695 0.79198 1.20266 1.20744 1.19684 1.23056 1.01422 0.97164 0.87419 0.90921 0.92993 0.92036 0.89744 0.90719 0.77055 0.89311 0.92806 0.93189 0.90150 0.90190 0.90016 0.76579 0.89173 0.89187 0.92174 0.89596 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.68 16 2 C -0.04 -0.29 6.45 -27.88 -0.18 -0.47 16 3 C 0.04 0.36 6.58 -82.10 -0.54 -0.18 16 4 N -0.37 -3.88 12.07 33.42 0.40 -3.48 16 5 O 0.10 0.86 11.20 17.18 0.19 1.06 16 6 C -0.06 -0.36 12.26 29.74 0.36 0.00 16 7 C -0.19 -1.38 5.47 -104.42 -0.57 -1.95 16 8 C 0.12 0.79 5.10 -4.97 -0.03 0.76 16 9 N -0.52 -3.80 5.12 -232.69 -1.19 -4.99 16 10 C 0.05 0.35 6.33 -2.30 -0.01 0.34 16 11 C -0.14 -1.39 6.76 -24.59 -0.17 -1.56 16 12 C 0.13 1.34 3.31 -66.10 -0.22 1.12 16 13 H 0.10 1.20 7.55 -51.93 -0.39 0.80 16 14 N -0.73 -8.85 5.18 -52.04 -0.27 -9.12 16 15 C 0.53 9.41 7.85 -10.98 -0.09 9.32 16 16 O -0.52 -11.20 15.51 5.56 0.09 -11.12 16 17 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 23 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.04 0.28 6.60 -2.84 -0.02 0.27 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.50 7.96 -51.92 -0.41 0.09 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.21 0.59 8.06 -52.49 -0.42 0.16 16 34 H 0.09 0.50 7.76 -51.93 -0.40 0.10 16 35 H 0.05 0.30 7.70 -51.93 -0.40 -0.10 16 36 H 0.05 0.36 7.54 -51.93 -0.39 -0.04 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.40 3.74 8.37 -40.82 -0.34 3.40 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.09 0.60 7.72 -51.93 -0.40 0.20 16 45 H 0.06 0.44 7.48 -51.93 -0.39 0.05 16 LS Contribution 391.00 15.07 5.89 5.89 Total: -1.00 -34.76 391.00 -8.96 -43.72 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.90 Total: -0.54 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.67 Total: -8.58 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.32 Total: -42.77 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.28 Total: -10.06 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.76 -8.96 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566655188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.569 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds