Wall clock time and date at job start Tue Mar 31 2020 23:06:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50701 * 109.47093 * 2 1
4 4 N 1.30172 * 126.80143 * 274.88943 * 3 2 1
5 5 O 1.20924 * 111.59924 * 179.79822 * 4 3 2
6 6 C 1.34037 * 111.56868 * 0.48203 * 5 4 3
7 7 C 1.35445 * 106.44857 * 359.71014 * 6 5 4
8 8 C 1.50696 * 128.00647 * 180.02562 * 7 6 5
9 9 N 1.46906 * 109.47086 * 103.07406 * 8 7 6
10 10 C 1.47841 * 110.99567 * 285.85437 * 9 8 7
11 11 C 1.54911 * 104.79347 * 213.63340 * 10 9 8
12 12 C 1.55141 * 101.65184 * 37.07250 * 11 10 9
13 13 H 1.09001 * 110.70501 * 82.72905 * 12 11 10
14 14 N 1.46501 * 110.70560 * 205.96087 * 12 11 10
15 15 C 1.34772 * 119.99848 * 268.59851 * 14 12 11
16 16 O 1.21278 * 120.00212 * 0.02562 * 15 14 12
17 17 C 1.50707 * 119.99819 * 179.97438 * 15 14 12
18 18 S 1.80998 * 109.47219 * 180.02562 * 17 15 14
19 19 C 1.76199 * 100.00008 * 180.02562 * 18 17 15
20 20 H 1.07997 * 120.00108 * 359.97438 * 19 18 17
21 21 C 1.38800 * 120.00004 * 179.97438 * 19 18 17
22 22 N 1.31631 * 119.99718 * 0.02562 * 21 19 18
23 23 Si 1.86795 * 119.99959 * 180.02562 * 21 19 18
24 24 H 1.48499 * 109.47185 * 90.00092 * 23 21 19
25 25 H 1.48501 * 109.46935 * 210.00252 * 23 21 19
26 26 H 1.48502 * 109.47361 * 329.99938 * 23 21 19
27 27 C 1.47438 * 110.99785 * 165.00945 * 9 8 7
28 28 H 1.08991 * 109.47461 * 299.99918 * 1 2 3
29 29 H 1.09003 * 109.46705 * 60.00440 * 1 2 3
30 30 H 1.09001 * 109.46761 * 179.97438 * 1 2 3
31 31 H 1.09009 * 109.46940 * 119.99926 * 2 1 3
32 32 H 1.08997 * 109.47707 * 239.99694 * 2 1 3
33 33 H 1.08002 * 126.77226 * 179.68585 * 6 5 4
34 34 H 1.09001 * 109.46872 * 223.07057 * 8 7 6
35 35 H 1.08997 * 109.47377 * 343.07140 * 8 7 6
36 36 H 1.08995 * 110.37694 * 332.46816 * 10 9 8
37 37 H 1.09003 * 110.37587 * 94.81034 * 10 9 8
38 38 H 1.09003 * 110.99169 * 278.98229 * 11 10 9
39 39 H 1.09001 * 111.02187 * 155.17545 * 11 10 9
40 40 H 0.96999 * 119.99423 * 88.60243 * 14 12 11
41 41 H 1.08999 * 109.46730 * 300.00620 * 17 15 14
42 42 H 1.08994 * 109.46600 * 60.00101 * 17 15 14
43 43 H 0.96998 * 119.99318 * 179.97438 * 22 21 19
44 44 H 1.09003 * 109.89218 * 242.65899 * 27 9 8
45 45 H 1.09001 * 109.89206 * 3.69447 * 27 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2085 2.1856 -1.0385
5 8 2.6192 3.2781 -0.7222
6 6 2.7827 3.3780 0.6044
7 6 2.4114 2.1851 1.1274
8 6 2.4036 1.7691 2.5758
9 7 1.0265 1.7989 3.0865
10 6 0.5696 3.1891 3.2971
11 6 -0.3690 3.1149 4.5273
12 6 0.3485 2.0561 5.4054
13 1 1.1505 2.5147 5.9839
14 7 -0.6070 1.3807 6.2869
15 6 -0.8387 1.8619 7.5244
16 8 -0.2564 2.8542 7.9080
17 6 -1.8221 1.1674 8.4310
18 16 -1.9121 2.0472 10.0102
19 6 -3.0972 1.0492 10.8493
20 1 -3.5244 0.1885 10.3562
21 6 -3.4817 1.3692 12.1440
22 7 -2.9615 2.4185 12.7447
23 14 -4.7376 0.3107 13.0338
24 1 -4.0383 -0.7702 13.7740
25 1 -5.5037 1.1499 13.9899
26 1 -5.6692 -0.2890 12.0450
27 6 0.9209 1.0712 4.3644
28 1 -0.3634 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8933 -0.5139 0.8901
32 1 1.8934 -0.5138 -0.8899
33 1 3.1402 4.2396 1.1487
34 1 2.8026 0.7587 2.6657
35 1 3.0207 2.4562 3.1546
36 1 1.4185 3.8400 3.5062
37 1 0.0232 3.5455 2.4239
38 1 -1.3637 2.7743 4.2395
39 1 -0.4203 4.0762 5.0385
40 1 -1.0729 0.5873 5.9799
41 1 -2.8061 1.1609 7.9624
42 1 -1.4952 0.1421 8.6040
43 1 -3.2305 2.6423 13.6494
44 1 0.2501 0.2194 4.2518
45 1 1.9067 0.7278 4.6781
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001566655188.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:06:14
Heat of formation + Delta-G solvation = 24.848688 kcal
Electronic energy + Delta-G solvation = -26276.681290 eV
Core-core repulsion = 22423.601896 eV
Total energy + Delta-G solvation = -3853.079395 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-45.23464 -40.01559 -38.53390 -36.07758 -34.47401 -32.92080 -32.45209 -31.34558
-30.89933 -29.62705 -28.09185 -26.17001 -25.47296 -24.75508 -22.19787 -21.56209
-21.27246 -20.89950 -20.41235 -17.96206 -17.86938 -17.71135 -16.70517 -16.56183
-15.88722 -15.39907 -15.11966 -14.86085 -14.82188 -14.67624 -14.23544 -13.97767
-13.86784 -13.61687 -13.24621 -13.02499 -12.84299 -12.72704 -12.46967 -12.34475
-12.10163 -11.82907 -11.80651 -11.63271 -11.49640 -11.13497 -11.09077 -11.05349
-11.03887 -10.78223 -10.18825 -9.85209 -9.82603 -9.46410 -9.09541 -8.96193
-8.76388 -8.27027 -6.53017 -6.24178 -3.94934 1.15664 1.87207 2.91305
2.97291 3.01580 3.20644 3.25610 3.29363 3.53864 3.72841 3.86772
4.17348 4.18095 4.29767 4.34940 4.60767 4.63307 4.84553 4.93116
4.96277 4.98363 5.02073 5.09125 5.11136 5.12215 5.16784 5.24846
5.33307 5.35342 5.52316 5.57131 5.58370 5.68757 5.70770 5.80371
5.83865 5.86560 5.97291 5.99749 6.10641 6.49181 6.57447 6.58919
7.57258 7.64170 7.97460 8.32826 8.54862 9.21295 10.83237
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.031185 B = 0.001791 C = 0.001730
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 897.650553 B =15627.090812 C =16178.277323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.040 4.040
3 C 0.041 3.959
4 N -0.370 5.370
5 O 0.095 5.905
6 C -0.057 4.057
7 C -0.187 4.187
8 C 0.125 3.875
9 N -0.519 5.519
10 C 0.045 3.955
11 C -0.141 4.141
12 C 0.128 3.872
13 H 0.096 0.904
14 N -0.729 5.729
15 C 0.534 3.466
16 O -0.517 6.517
17 C -0.153 4.153
18 S -0.061 6.061
19 C -0.536 4.536
20 H 0.073 0.927
21 C 0.073 3.927
22 N -0.867 5.867
23 Si 0.919 3.081
24 H -0.277 1.277
25 H -0.282 1.282
26 H -0.272 1.272
27 C 0.038 3.962
28 H 0.072 0.928
29 H 0.051 0.949
30 H 0.061 0.939
31 H 0.084 0.916
32 H 0.074 0.926
33 H 0.213 0.787
34 H 0.089 0.911
35 H 0.054 0.946
36 H 0.050 0.950
37 H 0.080 0.920
38 H 0.079 0.921
39 H 0.081 0.919
40 H 0.400 0.600
41 H 0.090 0.910
42 H 0.090 0.910
43 H 0.268 0.732
44 H 0.086 0.914
45 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.006 -3.158 -25.699 28.134
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.078 4.078
3 C -0.119 4.119
4 N -0.075 5.075
5 O 0.032 5.968
6 C -0.139 4.139
7 C -0.192 4.192
8 C -0.004 4.004
9 N -0.243 5.243
10 C -0.082 4.082
11 C -0.180 4.180
12 C 0.021 3.979
13 H 0.114 0.886
14 N -0.383 5.383
15 C 0.320 3.680
16 O -0.391 6.391
17 C -0.304 4.304
18 S 0.166 5.834
19 C -0.684 4.684
20 H 0.091 0.909
21 C -0.136 4.136
22 N -0.503 5.503
23 Si 0.745 3.255
24 H -0.203 1.203
25 H -0.207 1.207
26 H -0.197 1.197
27 C -0.091 4.091
28 H 0.091 0.909
29 H 0.070 0.930
30 H 0.080 0.920
31 H 0.103 0.897
32 H 0.093 0.907
33 H 0.229 0.771
34 H 0.107 0.893
35 H 0.072 0.928
36 H 0.068 0.932
37 H 0.099 0.901
38 H 0.098 0.902
39 H 0.100 0.900
40 H 0.234 0.766
41 H 0.108 0.892
42 H 0.108 0.892
43 H 0.078 0.922
44 H 0.104 0.896
45 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 11.514 -1.785 -26.576 29.018
hybrid contribution -1.091 -1.762 1.437 2.522
sum 10.423 -3.547 -25.139 27.444
Atomic orbital electron populations
1.21703 0.93557 1.02144 1.02927 1.19882 0.96901 0.87892 1.03153
1.23475 1.00953 0.99310 0.88153 1.73849 1.16604 0.92779 1.24278
1.84829 1.61520 1.27220 1.23268 1.25808 1.03452 1.00582 0.84053
1.21087 1.06612 0.94204 0.97258 1.20502 0.89756 1.01771 0.88323
1.63563 1.20821 1.13549 1.26383 1.23043 0.98091 0.88791 0.98316
1.23145 0.99484 1.00355 0.95058 1.22062 0.92384 0.92835 0.90589
0.88560 1.45948 1.45351 1.32090 1.14934 1.20342 0.82319 0.84267
0.81049 1.90698 1.49166 1.25156 1.74097 1.23532 1.00131 1.04073
1.02680 1.85391 1.56587 1.37752 1.03664 1.22863 1.28066 1.15282
1.02171 0.90908 1.24998 0.96698 0.95527 0.96397 1.70018 1.41651
1.25039 1.13565 0.86162 0.80412 0.79695 0.79198 1.20266 1.20744
1.19684 1.23056 1.01422 0.97164 0.87419 0.90921 0.92993 0.92036
0.89744 0.90719 0.77055 0.89311 0.92806 0.93189 0.90150 0.90190
0.90016 0.76579 0.89173 0.89187 0.92174 0.89596 0.91699
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.04 9.89 37.16 0.37 -0.68 16
2 C -0.04 -0.29 6.45 -27.88 -0.18 -0.47 16
3 C 0.04 0.36 6.58 -82.10 -0.54 -0.18 16
4 N -0.37 -3.88 12.07 33.42 0.40 -3.48 16
5 O 0.10 0.86 11.20 17.18 0.19 1.06 16
6 C -0.06 -0.36 12.26 29.74 0.36 0.00 16
7 C -0.19 -1.38 5.47 -104.42 -0.57 -1.95 16
8 C 0.12 0.79 5.10 -4.97 -0.03 0.76 16
9 N -0.52 -3.80 5.12 -232.69 -1.19 -4.99 16
10 C 0.05 0.35 6.33 -2.30 -0.01 0.34 16
11 C -0.14 -1.39 6.76 -24.59 -0.17 -1.56 16
12 C 0.13 1.34 3.31 -66.10 -0.22 1.12 16
13 H 0.10 1.20 7.55 -51.93 -0.39 0.80 16
14 N -0.73 -8.85 5.18 -52.04 -0.27 -9.12 16
15 C 0.53 9.41 7.85 -10.98 -0.09 9.32 16
16 O -0.52 -11.20 15.51 5.56 0.09 -11.12 16
17 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16
18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16
19 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16
20 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16
21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16
22 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16
23 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16
24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16
27 C 0.04 0.28 6.60 -2.84 -0.02 0.27 16
28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
31 H 0.08 0.50 7.96 -51.92 -0.41 0.09 16
32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
33 H 0.21 0.59 8.06 -52.49 -0.42 0.16 16
34 H 0.09 0.50 7.76 -51.93 -0.40 0.10 16
35 H 0.05 0.30 7.70 -51.93 -0.40 -0.10 16
36 H 0.05 0.36 7.54 -51.93 -0.39 -0.04 16
37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
40 H 0.40 3.74 8.37 -40.82 -0.34 3.40 16
41 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16
42 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16
43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16
44 H 0.09 0.60 7.72 -51.93 -0.40 0.20 16
45 H 0.06 0.44 7.48 -51.93 -0.39 0.05 16
LS Contribution 391.00 15.07 5.89 5.89
Total: -1.00 -34.76 391.00 -8.96 -43.72
By element:
Atomic # 1 Polarization: 6.36 SS G_CDS: -6.90 Total: -0.54 kcal
Atomic # 6 Polarization: -7.91 SS G_CDS: -0.67 Total: -8.58 kcal
Atomic # 7 Polarization: -42.44 SS G_CDS: -0.32 Total: -42.77 kcal
Atomic # 8 Polarization: -10.34 SS G_CDS: 0.28 Total: -10.06 kcal
Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal
Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -34.76 -8.96 -43.72 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001566655188.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.569 kcal
(2) G-P(sol) polarization free energy of solvation -34.762 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.807 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.849 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds