Wall clock time and date at job start Tue Mar 31 2020 23:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47093 * 2 1 4 4 N 1.30172 * 126.80143 * 274.88943 * 3 2 1 5 5 O 1.20924 * 111.59924 * 179.79822 * 4 3 2 6 6 C 1.34037 * 111.56868 * 0.48203 * 5 4 3 7 7 C 1.35445 * 106.44857 * 359.71014 * 6 5 4 8 8 C 1.50696 * 128.00647 * 180.02562 * 7 6 5 9 9 N 1.46906 * 109.47086 * 103.07406 * 8 7 6 10 10 C 1.47841 * 110.99567 * 285.85437 * 9 8 7 11 11 C 1.54911 * 104.79347 * 213.63340 * 10 9 8 12 12 C 1.55141 * 101.65184 * 37.07250 * 11 10 9 13 13 H 1.09001 * 110.70501 * 82.72905 * 12 11 10 14 14 N 1.46501 * 110.70560 * 205.96087 * 12 11 10 15 15 C 1.34772 * 119.99848 * 268.59851 * 14 12 11 16 16 O 1.21278 * 120.00212 * 0.02562 * 15 14 12 17 17 C 1.50707 * 119.99819 * 179.97438 * 15 14 12 18 18 S 1.80998 * 109.47219 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00008 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00108 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00004 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99718 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99959 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47185 * 90.00092 * 23 21 19 25 25 H 1.48501 * 109.46935 * 210.00252 * 23 21 19 26 26 H 1.48502 * 109.47361 * 329.99938 * 23 21 19 27 27 C 1.47438 * 110.99785 * 165.00945 * 9 8 7 28 28 H 1.08991 * 109.47461 * 299.99918 * 1 2 3 29 29 H 1.09003 * 109.46705 * 60.00440 * 1 2 3 30 30 H 1.09001 * 109.46761 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46940 * 119.99926 * 2 1 3 32 32 H 1.08997 * 109.47707 * 239.99694 * 2 1 3 33 33 H 1.08002 * 126.77226 * 179.68585 * 6 5 4 34 34 H 1.09001 * 109.46872 * 223.07057 * 8 7 6 35 35 H 1.08997 * 109.47377 * 343.07140 * 8 7 6 36 36 H 1.08995 * 110.37694 * 332.46816 * 10 9 8 37 37 H 1.09003 * 110.37587 * 94.81034 * 10 9 8 38 38 H 1.09003 * 110.99169 * 278.98229 * 11 10 9 39 39 H 1.09001 * 111.02187 * 155.17545 * 11 10 9 40 40 H 0.96999 * 119.99423 * 88.60243 * 14 12 11 41 41 H 1.08999 * 109.46730 * 300.00620 * 17 15 14 42 42 H 1.08994 * 109.46600 * 60.00101 * 17 15 14 43 43 H 0.96998 * 119.99318 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.89218 * 242.65899 * 27 9 8 45 45 H 1.09001 * 109.89206 * 3.69447 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2085 2.1856 -1.0385 5 8 2.6192 3.2781 -0.7222 6 6 2.7827 3.3780 0.6044 7 6 2.4114 2.1851 1.1274 8 6 2.4036 1.7691 2.5758 9 7 1.0265 1.7989 3.0865 10 6 0.5696 3.1891 3.2971 11 6 -0.3690 3.1149 4.5273 12 6 0.3485 2.0561 5.4054 13 1 1.1505 2.5147 5.9839 14 7 -0.6070 1.3807 6.2869 15 6 -0.8387 1.8619 7.5244 16 8 -0.2564 2.8542 7.9080 17 6 -1.8221 1.1674 8.4310 18 16 -1.9121 2.0472 10.0102 19 6 -3.0972 1.0492 10.8493 20 1 -3.5244 0.1885 10.3562 21 6 -3.4817 1.3692 12.1440 22 7 -2.9615 2.4185 12.7447 23 14 -4.7376 0.3107 13.0338 24 1 -4.0383 -0.7702 13.7740 25 1 -5.5037 1.1499 13.9899 26 1 -5.6692 -0.2890 12.0450 27 6 0.9209 1.0712 4.3644 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 3.1402 4.2396 1.1487 34 1 2.8026 0.7587 2.6657 35 1 3.0207 2.4562 3.1546 36 1 1.4185 3.8400 3.5062 37 1 0.0232 3.5455 2.4239 38 1 -1.3637 2.7743 4.2395 39 1 -0.4203 4.0762 5.0385 40 1 -1.0729 0.5873 5.9799 41 1 -2.8061 1.1609 7.9624 42 1 -1.4952 0.1421 8.6040 43 1 -3.2305 2.6423 13.6494 44 1 0.2501 0.2194 4.2518 45 1 1.9067 0.7278 4.6781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566655188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:14 Heat of formation + Delta-G solvation = 0.142022 kcal Electronic energy + Delta-G solvation = -26277.752652 eV Core-core repulsion = 22423.601896 eV Total energy + Delta-G solvation = -3854.150756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.84596 -41.03039 -39.57921 -36.73823 -35.43113 -34.57806 -33.67549 -31.96729 -31.76448 -30.73900 -29.01174 -27.66099 -26.79895 -25.32679 -22.84634 -22.47390 -21.88511 -21.66058 -21.44094 -19.84053 -18.52254 -18.36172 -17.93985 -17.57864 -16.87419 -16.72357 -16.36387 -16.18677 -15.89021 -15.50481 -15.23526 -14.88023 -14.65524 -14.49249 -14.47983 -14.22159 -13.78264 -13.57943 -13.37258 -13.31263 -13.15858 -12.89555 -12.77962 -12.61864 -12.57283 -12.43445 -12.37931 -12.11964 -11.86743 -11.71653 -11.68710 -11.13760 -10.94736 -10.79490 -10.39249 -10.26712 -10.08384 -9.33692 -8.65711 -8.34301 -6.11949 0.61962 1.26370 1.29501 1.42872 1.47864 1.58087 1.61527 2.24405 2.29307 2.45325 2.99953 3.01555 3.30285 3.33469 3.59330 3.63857 3.71610 3.97733 4.00394 4.02859 4.21846 4.31095 4.33495 4.34967 4.41627 4.45206 4.53159 4.55406 4.58765 4.66956 4.77145 4.85903 4.87858 4.96901 5.04984 5.05933 5.11446 5.18117 5.25083 5.42660 5.42807 5.54340 5.88814 6.01360 6.20412 6.51961 7.07289 7.26048 7.40032 8.74785 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.001791 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.650553 B =15627.090812 C =16178.277323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.040 4.040 3 C 0.032 3.968 4 N -0.405 5.405 5 O 0.080 5.920 6 C -0.046 4.046 7 C -0.197 4.197 8 C 0.126 3.874 9 N -0.520 5.520 10 C 0.054 3.946 11 C -0.139 4.139 12 C 0.124 3.876 13 H 0.076 0.924 14 N -0.702 5.702 15 C 0.537 3.463 16 O -0.565 6.565 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.258 1.258 27 C 0.049 3.951 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.247 0.753 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.417 0.583 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.099 0.901 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.847 -5.162 -26.654 29.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.079 4.079 3 C -0.127 4.127 4 N -0.113 5.113 5 O 0.019 5.981 6 C -0.128 4.128 7 C -0.201 4.201 8 C -0.002 4.002 9 N -0.244 5.244 10 C -0.074 4.074 11 C -0.179 4.179 12 C 0.018 3.982 13 H 0.095 0.905 14 N -0.356 5.356 15 C 0.323 3.677 16 O -0.443 6.443 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.182 1.182 27 C -0.079 4.079 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.263 0.737 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.255 0.745 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.361 -3.815 -27.594 30.084 hybrid contribution -0.982 -1.124 1.606 2.193 sum 10.380 -4.939 -25.988 28.417 Atomic orbital electron populations 1.21634 0.93611 1.02668 1.01737 1.19960 0.96744 0.87282 1.03867 1.23863 1.00492 0.99925 0.88448 1.73849 1.18340 0.93591 1.25560 1.84787 1.61759 1.26911 1.24609 1.26490 1.01810 1.01385 0.83137 1.21241 1.07099 0.94325 0.97459 1.20566 0.89176 1.02834 0.87593 1.63585 1.21798 1.13028 1.25996 1.22948 0.97913 0.89471 0.97043 1.23068 0.99962 0.99102 0.95718 1.22198 0.91493 0.93909 0.90591 0.90544 1.45677 1.44812 1.32045 1.13101 1.20038 0.81720 0.83633 0.82333 1.90689 1.50970 1.27243 1.75376 1.23375 1.01989 1.03947 0.98804 1.85564 1.57139 1.40640 1.09133 1.23205 1.28023 1.15412 1.02698 0.89886 1.26127 0.98894 0.96871 0.97343 1.70183 1.43431 1.27099 1.14039 0.84959 0.77520 0.77682 0.77860 1.19299 1.20403 1.18195 1.23005 1.02219 0.96443 0.86273 0.91674 0.94494 0.90649 0.88211 0.90784 0.73689 0.88156 0.91598 0.92212 0.90254 0.90304 0.92027 0.74476 0.87330 0.87086 0.92031 0.88293 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.04 -0.52 6.45 29.85 0.19 -0.32 16 3 C 0.03 0.53 6.58 43.58 0.29 0.81 16 4 N -0.41 -8.33 12.07 -49.57 -0.60 -8.93 16 5 O 0.08 1.39 11.20 71.66 0.80 2.20 16 6 C -0.05 -0.50 12.26 67.17 0.82 0.32 16 7 C -0.20 -2.47 5.47 -19.74 -0.11 -2.58 16 8 C 0.13 1.20 5.10 85.55 0.44 1.64 16 9 N -0.52 -6.14 5.12 -890.09 -4.55 -10.70 16 10 C 0.05 0.74 6.33 86.78 0.55 1.29 16 11 C -0.14 -2.58 6.76 31.98 0.22 -2.37 16 12 C 0.12 2.38 3.31 46.17 0.15 2.54 16 13 H 0.08 1.84 7.55 -2.39 -0.02 1.82 16 14 N -0.70 -15.69 5.18 -436.94 -2.26 -17.95 16 15 C 0.54 18.55 7.85 87.66 0.69 19.24 16 16 O -0.56 -24.94 15.51 -3.02 -0.05 -24.98 16 17 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 18 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 19 C -0.55 -30.69 9.50 67.95 0.65 -30.05 16 20 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 21 C 0.01 0.70 5.49 84.86 0.47 1.16 16 22 N -0.91 -55.49 13.22 21.65 0.29 -55.20 16 23 Si 1.00 43.08 29.55 68.60 2.03 45.10 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 27 C 0.05 0.58 6.60 86.65 0.57 1.15 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.93 7.96 -2.38 -0.02 0.92 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.25 0.60 8.06 -2.91 -0.02 0.58 16 34 H 0.10 0.76 7.76 -2.39 -0.02 0.74 16 35 H 0.07 0.50 7.70 -2.39 -0.02 0.49 16 36 H 0.06 0.71 7.54 -2.39 -0.02 0.69 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.42 6.49 8.37 -92.71 -0.78 5.71 16 41 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 42 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.10 0.99 7.72 -2.39 -0.02 0.97 16 45 H 0.08 0.78 7.48 -2.39 -0.02 0.76 16 Total: -1.00 -78.56 391.00 0.79 -77.77 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.22 Total: 14.84 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 6.07 Total: -12.72 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -7.13 Total: -92.77 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.76 Total: -22.79 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -78.56 0.79 -77.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566655188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.916 kcal (2) G-P(sol) polarization free energy of solvation -78.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds