Wall clock time and date at job start Tue Mar 31 2020 23:06:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50701 * 109.47093 * 2 1
4 4 N 1.30172 * 126.80143 * 274.88943 * 3 2 1
5 5 O 1.20924 * 111.59924 * 179.79822 * 4 3 2
6 6 C 1.34037 * 111.56868 * 0.48203 * 5 4 3
7 7 C 1.35445 * 106.44857 * 359.71014 * 6 5 4
8 8 C 1.50696 * 128.00647 * 180.02562 * 7 6 5
9 9 N 1.46906 * 109.47086 * 103.07406 * 8 7 6
10 10 C 1.47841 * 110.99567 * 285.85437 * 9 8 7
11 11 C 1.54911 * 104.79347 * 213.63340 * 10 9 8
12 12 C 1.55141 * 101.65184 * 37.07250 * 11 10 9
13 13 H 1.09001 * 110.70501 * 82.72905 * 12 11 10
14 14 N 1.46501 * 110.70560 * 205.96087 * 12 11 10
15 15 C 1.34772 * 119.99848 * 268.59851 * 14 12 11
16 16 O 1.21278 * 120.00212 * 0.02562 * 15 14 12
17 17 C 1.50707 * 119.99819 * 179.97438 * 15 14 12
18 18 S 1.80998 * 109.47219 * 180.02562 * 17 15 14
19 19 C 1.76199 * 100.00008 * 180.02562 * 18 17 15
20 20 H 1.07997 * 120.00108 * 359.97438 * 19 18 17
21 21 C 1.38800 * 120.00004 * 179.97438 * 19 18 17
22 22 N 1.31631 * 119.99718 * 0.02562 * 21 19 18
23 23 Si 1.86795 * 119.99959 * 180.02562 * 21 19 18
24 24 H 1.48499 * 109.47185 * 90.00092 * 23 21 19
25 25 H 1.48501 * 109.46935 * 210.00252 * 23 21 19
26 26 H 1.48502 * 109.47361 * 329.99938 * 23 21 19
27 27 C 1.47438 * 110.99785 * 165.00945 * 9 8 7
28 28 H 1.08991 * 109.47461 * 299.99918 * 1 2 3
29 29 H 1.09003 * 109.46705 * 60.00440 * 1 2 3
30 30 H 1.09001 * 109.46761 * 179.97438 * 1 2 3
31 31 H 1.09009 * 109.46940 * 119.99926 * 2 1 3
32 32 H 1.08997 * 109.47707 * 239.99694 * 2 1 3
33 33 H 1.08002 * 126.77226 * 179.68585 * 6 5 4
34 34 H 1.09001 * 109.46872 * 223.07057 * 8 7 6
35 35 H 1.08997 * 109.47377 * 343.07140 * 8 7 6
36 36 H 1.08995 * 110.37694 * 332.46816 * 10 9 8
37 37 H 1.09003 * 110.37587 * 94.81034 * 10 9 8
38 38 H 1.09003 * 110.99169 * 278.98229 * 11 10 9
39 39 H 1.09001 * 111.02187 * 155.17545 * 11 10 9
40 40 H 0.96999 * 119.99423 * 88.60243 * 14 12 11
41 41 H 1.08999 * 109.46730 * 300.00620 * 17 15 14
42 42 H 1.08994 * 109.46600 * 60.00101 * 17 15 14
43 43 H 0.96998 * 119.99318 * 179.97438 * 22 21 19
44 44 H 1.09003 * 109.89218 * 242.65899 * 27 9 8
45 45 H 1.09001 * 109.89206 * 3.69447 * 27 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2085 2.1856 -1.0385
5 8 2.6192 3.2781 -0.7222
6 6 2.7827 3.3780 0.6044
7 6 2.4114 2.1851 1.1274
8 6 2.4036 1.7691 2.5758
9 7 1.0265 1.7989 3.0865
10 6 0.5696 3.1891 3.2971
11 6 -0.3690 3.1149 4.5273
12 6 0.3485 2.0561 5.4054
13 1 1.1505 2.5147 5.9839
14 7 -0.6070 1.3807 6.2869
15 6 -0.8387 1.8619 7.5244
16 8 -0.2564 2.8542 7.9080
17 6 -1.8221 1.1674 8.4310
18 16 -1.9121 2.0472 10.0102
19 6 -3.0972 1.0492 10.8493
20 1 -3.5244 0.1885 10.3562
21 6 -3.4817 1.3692 12.1440
22 7 -2.9615 2.4185 12.7447
23 14 -4.7376 0.3107 13.0338
24 1 -4.0383 -0.7702 13.7740
25 1 -5.5037 1.1499 13.9899
26 1 -5.6692 -0.2890 12.0450
27 6 0.9209 1.0712 4.3644
28 1 -0.3634 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8933 -0.5139 0.8901
32 1 1.8934 -0.5138 -0.8899
33 1 3.1402 4.2396 1.1487
34 1 2.8026 0.7587 2.6657
35 1 3.0207 2.4562 3.1546
36 1 1.4185 3.8400 3.5062
37 1 0.0232 3.5455 2.4239
38 1 -1.3637 2.7743 4.2395
39 1 -0.4203 4.0762 5.0385
40 1 -1.0729 0.5873 5.9799
41 1 -2.8061 1.1609 7.9624
42 1 -1.4952 0.1421 8.6040
43 1 -3.2305 2.6423 13.6494
44 1 0.2501 0.2194 4.2518
45 1 1.9067 0.7278 4.6781
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001566655188.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:06:14
Heat of formation + Delta-G solvation = 0.142022 kcal
Electronic energy + Delta-G solvation = -26277.752652 eV
Core-core repulsion = 22423.601896 eV
Total energy + Delta-G solvation = -3854.150756 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-45.84596 -41.03039 -39.57921 -36.73823 -35.43113 -34.57806 -33.67549 -31.96729
-31.76448 -30.73900 -29.01174 -27.66099 -26.79895 -25.32679 -22.84634 -22.47390
-21.88511 -21.66058 -21.44094 -19.84053 -18.52254 -18.36172 -17.93985 -17.57864
-16.87419 -16.72357 -16.36387 -16.18677 -15.89021 -15.50481 -15.23526 -14.88023
-14.65524 -14.49249 -14.47983 -14.22159 -13.78264 -13.57943 -13.37258 -13.31263
-13.15858 -12.89555 -12.77962 -12.61864 -12.57283 -12.43445 -12.37931 -12.11964
-11.86743 -11.71653 -11.68710 -11.13760 -10.94736 -10.79490 -10.39249 -10.26712
-10.08384 -9.33692 -8.65711 -8.34301 -6.11949 0.61962 1.26370 1.29501
1.42872 1.47864 1.58087 1.61527 2.24405 2.29307 2.45325 2.99953
3.01555 3.30285 3.33469 3.59330 3.63857 3.71610 3.97733 4.00394
4.02859 4.21846 4.31095 4.33495 4.34967 4.41627 4.45206 4.53159
4.55406 4.58765 4.66956 4.77145 4.85903 4.87858 4.96901 5.04984
5.05933 5.11446 5.18117 5.25083 5.42660 5.42807 5.54340 5.88814
6.01360 6.20412 6.51961 7.07289 7.26048 7.40032 8.74785
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.031185 B = 0.001791 C = 0.001730
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 897.650553 B =15627.090812 C =16178.277323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.040 4.040
3 C 0.032 3.968
4 N -0.405 5.405
5 O 0.080 5.920
6 C -0.046 4.046
7 C -0.197 4.197
8 C 0.126 3.874
9 N -0.520 5.520
10 C 0.054 3.946
11 C -0.139 4.139
12 C 0.124 3.876
13 H 0.076 0.924
14 N -0.702 5.702
15 C 0.537 3.463
16 O -0.565 6.565
17 C -0.130 4.130
18 S -0.152 6.152
19 C -0.546 4.546
20 H 0.083 0.917
21 C 0.012 3.988
22 N -0.911 5.911
23 Si 0.998 3.002
24 H -0.268 1.268
25 H -0.279 1.279
26 H -0.258 1.258
27 C 0.049 3.951
28 H 0.064 0.936
29 H 0.036 0.964
30 H 0.075 0.925
31 H 0.100 0.900
32 H 0.074 0.926
33 H 0.247 0.753
34 H 0.100 0.900
35 H 0.066 0.934
36 H 0.060 0.940
37 H 0.079 0.921
38 H 0.078 0.922
39 H 0.061 0.939
40 H 0.417 0.583
41 H 0.108 0.892
42 H 0.111 0.889
43 H 0.271 0.729
44 H 0.099 0.901
45 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.847 -5.162 -26.654 29.236
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.079 4.079
3 C -0.127 4.127
4 N -0.113 5.113
5 O 0.019 5.981
6 C -0.128 4.128
7 C -0.201 4.201
8 C -0.002 4.002
9 N -0.244 5.244
10 C -0.074 4.074
11 C -0.179 4.179
12 C 0.018 3.982
13 H 0.095 0.905
14 N -0.356 5.356
15 C 0.323 3.677
16 O -0.443 6.443
17 C -0.281 4.281
18 S 0.075 5.925
19 C -0.693 4.693
20 H 0.101 0.899
21 C -0.192 4.192
22 N -0.548 5.548
23 Si 0.820 3.180
24 H -0.193 1.193
25 H -0.204 1.204
26 H -0.182 1.182
27 C -0.079 4.079
28 H 0.083 0.917
29 H 0.055 0.945
30 H 0.094 0.906
31 H 0.118 0.882
32 H 0.092 0.908
33 H 0.263 0.737
34 H 0.118 0.882
35 H 0.084 0.916
36 H 0.078 0.922
37 H 0.097 0.903
38 H 0.097 0.903
39 H 0.080 0.920
40 H 0.255 0.745
41 H 0.127 0.873
42 H 0.129 0.871
43 H 0.080 0.920
44 H 0.117 0.883
45 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 11.361 -3.815 -27.594 30.084
hybrid contribution -0.982 -1.124 1.606 2.193
sum 10.380 -4.939 -25.988 28.417
Atomic orbital electron populations
1.21634 0.93611 1.02668 1.01737 1.19960 0.96744 0.87282 1.03867
1.23863 1.00492 0.99925 0.88448 1.73849 1.18340 0.93591 1.25560
1.84787 1.61759 1.26911 1.24609 1.26490 1.01810 1.01385 0.83137
1.21241 1.07099 0.94325 0.97459 1.20566 0.89176 1.02834 0.87593
1.63585 1.21798 1.13028 1.25996 1.22948 0.97913 0.89471 0.97043
1.23068 0.99962 0.99102 0.95718 1.22198 0.91493 0.93909 0.90591
0.90544 1.45677 1.44812 1.32045 1.13101 1.20038 0.81720 0.83633
0.82333 1.90689 1.50970 1.27243 1.75376 1.23375 1.01989 1.03947
0.98804 1.85564 1.57139 1.40640 1.09133 1.23205 1.28023 1.15412
1.02698 0.89886 1.26127 0.98894 0.96871 0.97343 1.70183 1.43431
1.27099 1.14039 0.84959 0.77520 0.77682 0.77860 1.19299 1.20403
1.18195 1.23005 1.02219 0.96443 0.86273 0.91674 0.94494 0.90649
0.88211 0.90784 0.73689 0.88156 0.91598 0.92212 0.90254 0.90304
0.92027 0.74476 0.87330 0.87086 0.92031 0.88293 0.90319
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.79 9.89 71.98 0.71 -1.08 16
2 C -0.04 -0.52 6.45 29.85 0.19 -0.32 16
3 C 0.03 0.53 6.58 43.58 0.29 0.81 16
4 N -0.41 -8.33 12.07 -49.57 -0.60 -8.93 16
5 O 0.08 1.39 11.20 71.66 0.80 2.20 16
6 C -0.05 -0.50 12.26 67.17 0.82 0.32 16
7 C -0.20 -2.47 5.47 -19.74 -0.11 -2.58 16
8 C 0.13 1.20 5.10 85.55 0.44 1.64 16
9 N -0.52 -6.14 5.12 -890.09 -4.55 -10.70 16
10 C 0.05 0.74 6.33 86.78 0.55 1.29 16
11 C -0.14 -2.58 6.76 31.98 0.22 -2.37 16
12 C 0.12 2.38 3.31 46.17 0.15 2.54 16
13 H 0.08 1.84 7.55 -2.39 -0.02 1.82 16
14 N -0.70 -15.69 5.18 -436.94 -2.26 -17.95 16
15 C 0.54 18.55 7.85 87.66 0.69 19.24 16
16 O -0.56 -24.94 15.51 -3.02 -0.05 -24.98 16
17 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16
18 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16
19 C -0.55 -30.69 9.50 67.95 0.65 -30.05 16
20 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16
21 C 0.01 0.70 5.49 84.86 0.47 1.16 16
22 N -0.91 -55.49 13.22 21.65 0.29 -55.20 16
23 Si 1.00 43.08 29.55 68.60 2.03 45.10 16
24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16
25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16
26 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16
27 C 0.05 0.58 6.60 86.65 0.57 1.15 16
28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
29 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16
30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16
31 H 0.10 0.93 7.96 -2.38 -0.02 0.92 16
32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
33 H 0.25 0.60 8.06 -2.91 -0.02 0.58 16
34 H 0.10 0.76 7.76 -2.39 -0.02 0.74 16
35 H 0.07 0.50 7.70 -2.39 -0.02 0.49 16
36 H 0.06 0.71 7.54 -2.39 -0.02 0.69 16
37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16
39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16
40 H 0.42 6.49 8.37 -92.71 -0.78 5.71 16
41 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16
42 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16
43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16
44 H 0.10 0.99 7.72 -2.39 -0.02 0.97 16
45 H 0.08 0.78 7.48 -2.39 -0.02 0.76 16
Total: -1.00 -78.56 391.00 0.79 -77.77
By element:
Atomic # 1 Polarization: 14.62 SS G_CDS: 0.22 Total: 14.84 kcal
Atomic # 6 Polarization: -18.80 SS G_CDS: 6.07 Total: -12.72 kcal
Atomic # 7 Polarization: -85.64 SS G_CDS: -7.13 Total: -92.77 kcal
Atomic # 8 Polarization: -23.54 SS G_CDS: 0.76 Total: -22.79 kcal
Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal
Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal
Total: -78.56 0.79 -77.77 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001566655188.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.916 kcal
(2) G-P(sol) polarization free energy of solvation -78.564 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.648 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.774 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.142 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds