Wall clock time and date at job start Tue Mar 31 2020 22:34:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30257 * 125.61917 * 2 1
4 4 C 1.34471 * 108.70223 * 180.02562 * 3 2 1
5 5 C 1.34331 * 107.67239 * 359.97438 * 4 3 2
6 6 C 1.50695 * 126.44712 * 180.02562 * 5 4 3
7 7 N 1.46905 * 109.47078 * 89.99986 * 6 5 4
8 8 C 1.46852 * 110.99794 * 293.95239 * 7 6 5
9 9 C 1.53042 * 109.52121 * 174.16150 * 8 7 6
10 10 C 1.53114 * 109.27750 * 59.18064 * 9 8 7
11 11 C 1.53117 * 109.16170 * 302.34288 * 10 9 8
12 12 H 1.08992 * 109.50626 * 297.67587 * 11 10 9
13 13 N 1.46504 * 109.50491 * 177.59454 * 11 10 9
14 14 C 1.34779 * 119.99957 * 84.99952 * 13 11 10
15 15 O 1.21281 * 119.99517 * 0.02562 * 14 13 11
16 16 C 1.50693 * 120.00222 * 179.97438 * 14 13 11
17 17 S 1.81002 * 109.47406 * 180.02562 * 16 14 13
18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14
19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16
20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16
21 21 N 1.31625 * 119.99820 * 0.27912 * 20 18 17
22 22 Si 1.86800 * 119.99759 * 179.97438 * 20 18 17
23 23 H 1.48500 * 109.47035 * 60.00421 * 22 20 18
24 24 H 1.48503 * 109.46845 * 179.97438 * 22 20 18
25 25 H 1.48503 * 109.47237 * 300.00177 * 22 20 18
26 26 C 1.46846 * 110.99902 * 169.74667 * 7 6 5
27 27 O 1.33969 * 125.62108 * 180.33294 * 2 1 3
28 28 H 1.09001 * 109.47146 * 89.97772 * 1 2 3
29 29 H 1.09004 * 109.46644 * 209.97550 * 1 2 3
30 30 H 1.08997 * 109.47411 * 329.97554 * 1 2 3
31 31 H 1.08006 * 126.16332 * 180.02562 * 4 3 2
32 32 H 1.09000 * 109.47043 * 329.99856 * 6 5 4
33 33 H 1.09000 * 109.47146 * 209.99715 * 6 5 4
34 34 H 1.09000 * 109.46315 * 54.14574 * 8 7 6
35 35 H 1.08999 * 109.46197 * 294.17938 * 8 7 6
36 36 H 1.09000 * 109.50068 * 299.23711 * 9 8 7
37 37 H 1.08996 * 109.53240 * 179.14135 * 9 8 7
38 38 H 1.08998 * 109.52274 * 182.43772 * 10 9 8
39 39 H 1.08998 * 109.57442 * 62.28478 * 10 9 8
40 40 H 0.96999 * 120.00526 * 265.00217 * 13 11 10
41 41 H 1.09005 * 109.46836 * 60.00415 * 16 14 13
42 42 H 1.08996 * 109.47837 * 300.00838 * 16 14 13
43 43 H 0.97001 * 120.00425 * 359.71679 * 21 20 18
44 44 H 1.08995 * 109.46522 * 65.82261 * 26 7 6
45 45 H 1.08996 * 109.46068 * 305.84964 * 26 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0589 0.0000
4 6 3.5521 0.6676 -0.0006
5 6 3.5698 -0.6756 -0.0004
6 6 4.7937 -1.5548 -0.0003
7 7 5.1915 -1.8403 1.3848
8 6 5.6388 -0.6187 2.0662
9 6 5.9055 -0.9248 3.5418
10 6 6.9785 -2.0121 3.6466
11 6 6.5088 -3.2564 2.8880
12 1 5.5998 -3.6424 3.3493
13 7 7.5544 -4.2816 2.9349
14 6 7.6344 -5.1147 3.9913
15 8 6.8405 -5.0159 4.9029
16 6 8.7095 -6.1695 4.0394
17 16 8.5536 -7.1207 5.5714
18 6 9.8936 -8.2469 5.3700
19 1 10.5118 -8.1981 4.4858
20 6 10.1554 -9.1961 6.3484
21 7 9.3992 -9.2585 7.4239
22 14 11.5757 -10.3906 6.1345
23 1 12.8474 -9.6322 6.0211
24 1 11.6427 -11.2954 7.3102
25 1 11.3663 -11.1932 4.9028
26 6 6.2246 -2.8828 1.4314
27 8 2.2873 -1.0890 -0.0063
28 1 -0.3633 0.0004 -1.0277
29 1 -0.3633 -0.8903 0.5135
30 1 -0.3634 0.8897 0.5142
31 1 4.4156 1.3164 -0.0003
32 1 5.6080 -1.0441 -0.5142
33 1 4.5696 -2.4897 -0.5139
34 1 4.8650 0.1450 1.9878
35 1 6.5547 -0.2569 1.5990
36 1 4.9866 -1.2736 4.0130
37 1 6.2521 -0.0218 4.0444
38 1 7.1406 -2.2640 4.6947
39 1 7.9095 -1.6496 3.2110
40 1 8.1891 -4.3607 2.2057
41 1 9.6888 -5.6919 4.0059
42 1 8.6017 -6.8375 3.1848
43 1 8.6615 -8.6385 7.5348
44 1 7.1377 -2.5103 0.9672
45 1 5.8763 -3.7636 0.8919
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001567770751.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:34:20
Heat of formation + Delta-G solvation = -18.873456 kcal
Electronic energy + Delta-G solvation = -26225.963611 eV
Core-core repulsion = 22370.988282 eV
Total energy + Delta-G solvation = -3854.975329 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-43.69434 -40.07981 -38.61984 -35.25313 -35.10239 -33.42865 -32.53869 -32.28561
-30.66952 -29.36606 -28.21306 -26.05349 -24.85795 -23.51086 -23.05797 -22.53194
-21.29517 -20.40768 -20.14951 -18.35169 -17.41664 -17.31829 -16.69883 -16.48587
-15.73292 -15.52309 -15.19033 -15.11544 -14.58317 -14.43007 -14.16560 -14.02204
-13.84568 -13.69720 -13.47437 -13.30915 -13.27502 -13.04809 -12.87050 -12.41531
-12.33204 -12.12519 -11.87313 -11.68347 -11.59969 -11.16403 -11.03590 -10.92844
-10.89059 -10.77137 -10.18414 -9.59648 -9.51302 -9.17681 -9.05045 -8.98866
-8.80270 -8.23609 -6.68350 -6.63158 -4.01186 1.01570 2.21896 2.29537
2.83114 2.97003 3.29498 3.36892 3.37970 3.56574 3.67092 3.74128
4.23969 4.27700 4.37180 4.50550 4.58134 4.60581 4.72681 4.77890
4.91214 4.93995 4.96355 5.01535 5.04345 5.13711 5.16685 5.21399
5.30060 5.34976 5.45922 5.48744 5.52297 5.61729 5.67086 5.75231
5.84418 5.93752 5.99177 6.06556 6.12576 6.38729 6.49455 6.64536
7.35810 7.59327 7.90394 8.48859 8.49831 9.25953 10.80691
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.030095 B = 0.001762 C = 0.001746
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 930.169506 B =15890.487046 C =16028.905956
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 C 0.190 3.810
3 N -0.486 5.486
4 C -0.036 4.036
5 C -0.033 4.033
6 C 0.139 3.861
7 N -0.532 5.532
8 C 0.049 3.951
9 C -0.113 4.113
10 C -0.133 4.133
11 C 0.152 3.848
12 H 0.097 0.903
13 N -0.734 5.734
14 C 0.533 3.467
15 O -0.514 6.514
16 C -0.131 4.131
17 S -0.115 6.115
18 C -0.608 4.608
19 H 0.065 0.935
20 C 0.035 3.965
21 N -0.883 5.883
22 Si 1.084 2.916
23 H -0.285 1.285
24 H -0.278 1.278
25 H -0.285 1.285
26 C 0.054 3.946
27 O -0.192 6.192
28 H 0.092 0.908
29 H 0.089 0.911
30 H 0.101 0.899
31 H 0.181 0.819
32 H 0.073 0.927
33 H 0.097 0.903
34 H 0.079 0.921
35 H 0.039 0.961
36 H 0.074 0.926
37 H 0.072 0.928
38 H 0.075 0.925
39 H 0.061 0.939
40 H 0.397 0.603
41 H 0.092 0.908
42 H 0.092 0.908
43 H 0.278 0.722
44 H 0.043 0.957
45 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.288 20.890 -19.539 30.750
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.017 4.017
3 N -0.216 5.216
4 C -0.175 4.175
5 C -0.086 4.086
6 C 0.011 3.989
7 N -0.258 5.258
8 C -0.079 4.079
9 C -0.151 4.151
10 C -0.172 4.172
11 C 0.046 3.954
12 H 0.115 0.885
13 N -0.388 5.388
14 C 0.319 3.681
15 O -0.388 6.388
16 C -0.282 4.282
17 S 0.111 5.889
18 C -0.756 4.756
19 H 0.084 0.916
20 C -0.175 4.175
21 N -0.517 5.517
22 Si 0.910 3.090
23 H -0.212 1.212
24 H -0.203 1.203
25 H -0.211 1.211
26 C -0.074 4.074
27 O -0.078 6.078
28 H 0.111 0.889
29 H 0.108 0.892
30 H 0.119 0.881
31 H 0.198 0.802
32 H 0.091 0.909
33 H 0.116 0.884
34 H 0.097 0.903
35 H 0.057 0.943
36 H 0.093 0.907
37 H 0.091 0.909
38 H 0.094 0.906
39 H 0.080 0.920
40 H 0.231 0.769
41 H 0.110 0.890
42 H 0.110 0.890
43 H 0.090 0.910
44 H 0.061 0.939
45 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -12.517 20.160 -17.024 29.204
hybrid contribution 1.686 0.806 -2.733 3.310
sum -10.831 20.966 -19.756 30.776
Atomic orbital electron populations
1.20275 0.81290 1.05307 1.04664 1.26331 0.96539 0.78663 1.00159
1.70450 1.01992 1.30347 1.18798 1.23048 0.95195 0.92864 1.06400
1.23142 0.83655 0.94863 1.06982 1.20369 0.89464 0.98626 0.90409
1.61712 1.40430 1.09612 1.14030 1.22281 0.99035 0.91450 0.95118
1.21523 0.99819 0.98776 0.95011 1.22009 0.98217 0.94869 1.02076
1.20795 0.92219 0.87941 0.94437 0.88452 1.45966 1.34204 1.35171
1.23482 1.20265 0.85271 0.81105 0.81442 1.90709 1.41463 1.70494
1.36139 1.23319 0.99657 0.99236 1.06017 1.84835 1.44175 1.38945
1.20929 1.23703 1.17856 1.22159 1.11925 0.91633 1.26056 1.01812
0.97780 0.91884 1.70797 1.17192 1.37096 1.26656 0.83331 0.74020
0.75386 0.76267 1.21155 1.20260 1.21138 1.22276 0.93128 0.95071
0.96973 1.84412 1.16513 1.37616 1.69301 0.88944 0.89174 0.88064
0.80229 0.90912 0.88445 0.90293 0.94326 0.90725 0.90921 0.90620
0.92037 0.76945 0.88993 0.88963 0.90981 0.93877 0.89682
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.27 10.51 36.01 0.38 0.11 16
2 C 0.19 1.73 8.34 -12.95 -0.11 1.62 16
3 N -0.49 -5.09 11.29 -11.10 -0.13 -5.21 16
4 C -0.04 -0.32 10.29 -17.77 -0.18 -0.50 16
5 C -0.03 -0.29 6.28 -35.69 -0.22 -0.51 16
6 C 0.14 0.97 5.52 -4.98 -0.03 0.94 16
7 N -0.53 -4.56 4.65 -236.11 -1.10 -5.66 16
8 C 0.05 0.39 5.27 -3.83 -0.02 0.37 16
9 C -0.11 -1.05 6.09 -26.65 -0.16 -1.21 16
10 C -0.13 -1.46 5.58 -26.61 -0.15 -1.61 16
11 C 0.15 1.75 2.62 -67.85 -0.18 1.57 16
12 H 0.10 1.42 7.58 -51.93 -0.39 1.03 16
13 N -0.73 -9.29 5.08 -53.73 -0.27 -9.56 16
14 C 0.53 9.66 7.81 -10.99 -0.09 9.57 16
15 O -0.51 -11.44 15.53 5.56 0.09 -11.35 16
16 C -0.13 -2.60 6.16 36.00 0.22 -2.38 16
17 S -0.12 -3.09 19.60 -107.50 -2.11 -5.20 16
18 C -0.61 -17.49 9.50 30.94 0.29 -17.20 16
19 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16
20 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16
21 N -0.88 -27.49 13.67 55.49 0.76 -26.74 16
22 Si 1.08 24.85 29.92 -169.99 -5.09 19.76 16
23 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16
24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
25 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16
26 C 0.05 0.45 4.93 -3.83 -0.02 0.43 16
27 O -0.19 -1.96 10.78 5.35 0.06 -1.90 16
28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16
29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16
30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16
31 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16
32 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16
33 H 0.10 0.62 7.98 -51.93 -0.41 0.21 16
34 H 0.08 0.65 6.01 -51.93 -0.31 0.33 16
35 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16
36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
38 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16
39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
40 H 0.40 3.77 8.60 -40.82 -0.35 3.42 16
41 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16
42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16
43 H 0.28 8.84 7.13 -40.82 -0.29 8.55 16
44 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16
45 H 0.08 0.68 8.01 -51.93 -0.42 0.27 16
LS Contribution 385.07 15.07 5.80 5.80
Total: -1.00 -37.03 385.07 -9.22 -46.25
By element:
Atomic # 1 Polarization: 8.55 SS G_CDS: -6.88 Total: 1.67 kcal
Atomic # 6 Polarization: -7.52 SS G_CDS: -0.36 Total: -7.88 kcal
Atomic # 7 Polarization: -46.43 SS G_CDS: -0.74 Total: -47.16 kcal
Atomic # 8 Polarization: -13.40 SS G_CDS: 0.14 Total: -13.26 kcal
Atomic # 14 Polarization: 24.85 SS G_CDS: -5.09 Total: 19.76 kcal
Atomic # 16 Polarization: -3.09 SS G_CDS: -2.11 Total: -5.20 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -37.03 -9.22 -46.25 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567770751.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.380 kcal
(2) G-P(sol) polarization free energy of solvation -37.035 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.655 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.253 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.873 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds