Wall clock time and date at job start Tue Mar 31 2020 22:34:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30257 * 125.61917 * 2 1
4 4 C 1.34471 * 108.70223 * 180.02562 * 3 2 1
5 5 C 1.34331 * 107.67239 * 359.97438 * 4 3 2
6 6 C 1.50695 * 126.44712 * 180.02562 * 5 4 3
7 7 N 1.46905 * 109.47078 * 89.99986 * 6 5 4
8 8 C 1.46852 * 110.99794 * 293.95239 * 7 6 5
9 9 C 1.53042 * 109.52121 * 174.16150 * 8 7 6
10 10 C 1.53114 * 109.27750 * 59.18064 * 9 8 7
11 11 C 1.53117 * 109.16170 * 302.34288 * 10 9 8
12 12 H 1.08992 * 109.50626 * 297.67587 * 11 10 9
13 13 N 1.46504 * 109.50491 * 177.59454 * 11 10 9
14 14 C 1.34779 * 119.99957 * 84.99952 * 13 11 10
15 15 O 1.21281 * 119.99517 * 0.02562 * 14 13 11
16 16 C 1.50693 * 120.00222 * 179.97438 * 14 13 11
17 17 S 1.81002 * 109.47406 * 180.02562 * 16 14 13
18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14
19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16
20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16
21 21 N 1.31625 * 119.99820 * 0.27912 * 20 18 17
22 22 Si 1.86800 * 119.99759 * 179.97438 * 20 18 17
23 23 H 1.48500 * 109.47035 * 60.00421 * 22 20 18
24 24 H 1.48503 * 109.46845 * 179.97438 * 22 20 18
25 25 H 1.48503 * 109.47237 * 300.00177 * 22 20 18
26 26 C 1.46846 * 110.99902 * 169.74667 * 7 6 5
27 27 O 1.33969 * 125.62108 * 180.33294 * 2 1 3
28 28 H 1.09001 * 109.47146 * 89.97772 * 1 2 3
29 29 H 1.09004 * 109.46644 * 209.97550 * 1 2 3
30 30 H 1.08997 * 109.47411 * 329.97554 * 1 2 3
31 31 H 1.08006 * 126.16332 * 180.02562 * 4 3 2
32 32 H 1.09000 * 109.47043 * 329.99856 * 6 5 4
33 33 H 1.09000 * 109.47146 * 209.99715 * 6 5 4
34 34 H 1.09000 * 109.46315 * 54.14574 * 8 7 6
35 35 H 1.08999 * 109.46197 * 294.17938 * 8 7 6
36 36 H 1.09000 * 109.50068 * 299.23711 * 9 8 7
37 37 H 1.08996 * 109.53240 * 179.14135 * 9 8 7
38 38 H 1.08998 * 109.52274 * 182.43772 * 10 9 8
39 39 H 1.08998 * 109.57442 * 62.28478 * 10 9 8
40 40 H 0.96999 * 120.00526 * 265.00217 * 13 11 10
41 41 H 1.09005 * 109.46836 * 60.00415 * 16 14 13
42 42 H 1.08996 * 109.47837 * 300.00838 * 16 14 13
43 43 H 0.97001 * 120.00425 * 359.71679 * 21 20 18
44 44 H 1.08995 * 109.46522 * 65.82261 * 26 7 6
45 45 H 1.08996 * 109.46068 * 305.84964 * 26 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0589 0.0000
4 6 3.5521 0.6676 -0.0006
5 6 3.5698 -0.6756 -0.0004
6 6 4.7937 -1.5548 -0.0003
7 7 5.1915 -1.8403 1.3848
8 6 5.6388 -0.6187 2.0662
9 6 5.9055 -0.9248 3.5418
10 6 6.9785 -2.0121 3.6466
11 6 6.5088 -3.2564 2.8880
12 1 5.5998 -3.6424 3.3493
13 7 7.5544 -4.2816 2.9349
14 6 7.6344 -5.1147 3.9913
15 8 6.8405 -5.0159 4.9029
16 6 8.7095 -6.1695 4.0394
17 16 8.5536 -7.1207 5.5714
18 6 9.8936 -8.2469 5.3700
19 1 10.5118 -8.1981 4.4858
20 6 10.1554 -9.1961 6.3484
21 7 9.3992 -9.2585 7.4239
22 14 11.5757 -10.3906 6.1345
23 1 12.8474 -9.6322 6.0211
24 1 11.6427 -11.2954 7.3102
25 1 11.3663 -11.1932 4.9028
26 6 6.2246 -2.8828 1.4314
27 8 2.2873 -1.0890 -0.0063
28 1 -0.3633 0.0004 -1.0277
29 1 -0.3633 -0.8903 0.5135
30 1 -0.3634 0.8897 0.5142
31 1 4.4156 1.3164 -0.0003
32 1 5.6080 -1.0441 -0.5142
33 1 4.5696 -2.4897 -0.5139
34 1 4.8650 0.1450 1.9878
35 1 6.5547 -0.2569 1.5990
36 1 4.9866 -1.2736 4.0130
37 1 6.2521 -0.0218 4.0444
38 1 7.1406 -2.2640 4.6947
39 1 7.9095 -1.6496 3.2110
40 1 8.1891 -4.3607 2.2057
41 1 9.6888 -5.6919 4.0059
42 1 8.6017 -6.8375 3.1848
43 1 8.6615 -8.6385 7.5348
44 1 7.1377 -2.5103 0.9672
45 1 5.8763 -3.7636 0.8919
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001567770751.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:34:19
Heat of formation + Delta-G solvation = -48.450595 kcal
Electronic energy + Delta-G solvation = -26227.246172 eV
Core-core repulsion = 22370.988282 eV
Total energy + Delta-G solvation = -3856.257890 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-44.33675 -41.16944 -39.68927 -36.26602 -35.77693 -34.74710 -34.35739 -32.85717
-31.85375 -30.14214 -29.26057 -27.07194 -26.66363 -24.22682 -23.93320 -23.16958
-22.02362 -21.65151 -21.03305 -20.37256 -18.21814 -18.06697 -17.86952 -17.53874
-16.76657 -16.55166 -16.20492 -16.16291 -15.79380 -15.68331 -15.19075 -14.99287
-14.85878 -14.79281 -14.52912 -14.43399 -13.99127 -13.86476 -13.80935 -13.65057
-13.59472 -13.32153 -12.87677 -12.73186 -12.47826 -12.32458 -11.97197 -11.94974
-11.90371 -11.67145 -11.56465 -11.52153 -11.09393 -11.02314 -10.32172 -10.19304
-9.77041 -9.39369 -8.92289 -8.87057 -6.27563 0.38529 1.18843 1.51103
1.52209 1.61007 1.61555 1.71087 1.81113 2.10114 2.35011 2.92269
3.02612 3.15063 3.16776 3.59155 3.69346 3.79208 3.84557 3.95959
3.98770 4.09834 4.15589 4.18219 4.26129 4.37115 4.38466 4.49409
4.53087 4.60959 4.62434 4.65050 4.68641 4.80971 4.84768 4.99711
5.02573 5.05313 5.16636 5.24399 5.37082 5.38980 5.64374 5.87297
5.93841 6.14639 6.43588 6.72120 7.06540 7.17170 8.51063
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.030095 B = 0.001762 C = 0.001746
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 930.169506 B =15890.487046 C =16028.905956
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 C 0.182 3.818
3 N -0.518 5.518
4 C -0.042 4.042
5 C -0.044 4.044
6 C 0.143 3.857
7 N -0.553 5.553
8 C 0.055 3.945
9 C -0.110 4.110
10 C -0.128 4.128
11 C 0.151 3.849
12 H 0.060 0.940
13 N -0.705 5.705
14 C 0.536 3.464
15 O -0.565 6.565
16 C -0.109 4.109
17 S -0.199 6.199
18 C -0.613 4.613
19 H 0.076 0.924
20 C -0.020 4.020
21 N -0.913 5.913
22 Si 1.137 2.863
23 H -0.263 1.263
24 H -0.281 1.281
25 H -0.263 1.263
26 C 0.064 3.936
27 O -0.211 6.211
28 H 0.110 0.890
29 H 0.100 0.900
30 H 0.109 0.891
31 H 0.201 0.799
32 H 0.102 0.898
33 H 0.103 0.897
34 H 0.077 0.923
35 H 0.062 0.938
36 H 0.050 0.950
37 H 0.086 0.914
38 H 0.039 0.961
39 H 0.082 0.918
40 H 0.418 0.582
41 H 0.113 0.887
42 H 0.113 0.887
43 H 0.260 0.740
44 H 0.073 0.927
45 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.724 21.801 -22.738 32.968
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.024 4.024
3 N -0.248 5.248
4 C -0.181 4.181
5 C -0.097 4.097
6 C 0.016 3.984
7 N -0.279 5.279
8 C -0.072 4.072
9 C -0.148 4.148
10 C -0.166 4.166
11 C 0.046 3.954
12 H 0.079 0.921
13 N -0.359 5.359
14 C 0.321 3.679
15 O -0.443 6.443
16 C -0.260 4.260
17 S 0.028 5.972
18 C -0.761 4.761
19 H 0.095 0.905
20 C -0.223 4.223
21 N -0.549 5.549
22 Si 0.954 3.046
23 H -0.187 1.187
24 H -0.206 1.206
25 H -0.187 1.187
26 C -0.064 4.064
27 O -0.098 6.098
28 H 0.129 0.871
29 H 0.119 0.881
30 H 0.127 0.873
31 H 0.218 0.782
32 H 0.119 0.881
33 H 0.121 0.879
34 H 0.095 0.905
35 H 0.080 0.920
36 H 0.069 0.931
37 H 0.104 0.896
38 H 0.058 0.942
39 H 0.101 0.899
40 H 0.256 0.744
41 H 0.131 0.869
42 H 0.131 0.869
43 H 0.071 0.929
44 H 0.091 0.909
45 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -10.949 21.121 -20.297 31.272
hybrid contribution 1.107 0.655 -1.806 2.217
sum -9.841 21.776 -22.103 32.552
Atomic orbital electron populations
1.20504 0.78792 1.06177 1.06076 1.27182 0.97949 0.78219 0.99081
1.70460 1.02993 1.31205 1.20134 1.23424 0.95371 0.93325 1.05986
1.23553 0.83776 0.95293 1.07067 1.20478 0.89364 0.99051 0.89489
1.61593 1.40903 1.09917 1.15453 1.22212 0.99994 0.91227 0.93779
1.21490 0.98165 0.98586 0.96562 1.21938 0.99715 0.95082 0.99895
1.20858 0.90207 0.87350 0.97009 0.92148 1.45654 1.34358 1.33711
1.22187 1.20007 0.84334 0.81431 0.82105 1.90705 1.43225 1.71938
1.38383 1.23223 1.01440 0.99177 1.02164 1.85111 1.44635 1.40740
1.26694 1.24038 1.17811 1.22078 1.12162 0.90538 1.27850 1.03722
0.99628 0.91107 1.70918 1.17934 1.37659 1.28364 0.82717 0.71446
0.73509 0.76902 1.18730 1.20638 1.18741 1.22147 0.94501 0.95603
0.94100 1.84417 1.17362 1.38363 1.69676 0.87145 0.88136 0.87283
0.78226 0.88073 0.87861 0.90493 0.92001 0.93125 0.89597 0.94204
0.89904 0.74445 0.86883 0.86853 0.92916 0.90901 0.89039
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.48 10.51 71.24 0.75 0.27 16
2 C 0.18 3.20 8.34 88.34 0.74 3.93 16
3 N -0.52 -10.45 11.29 -303.82 -3.43 -13.89 16
4 C -0.04 -0.69 10.29 83.40 0.86 0.17 16
5 C -0.04 -0.71 6.28 24.79 0.16 -0.55 16
6 C 0.14 1.59 5.52 85.55 0.47 2.06 16
7 N -0.55 -8.16 4.65 -900.91 -4.19 -12.35 16
8 C 0.06 0.75 5.27 86.33 0.45 1.20 16
9 C -0.11 -1.95 6.09 30.65 0.19 -1.77 16
10 C -0.13 -2.68 5.58 30.67 0.17 -2.51 16
11 C 0.15 3.32 2.62 45.04 0.12 3.43 16
12 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16
13 N -0.71 -16.51 5.08 -442.29 -2.25 -18.76 16
14 C 0.54 19.21 7.81 87.65 0.68 19.90 16
15 O -0.56 -26.07 15.53 -3.03 -0.05 -26.11 16
16 C -0.11 -4.19 6.16 71.23 0.44 -3.75 16
17 S -0.20 -10.92 19.60 -56.49 -1.11 -12.02 16
18 C -0.61 -35.21 9.50 67.96 0.65 -34.56 16
19 H 0.08 4.08 7.80 -2.91 -0.02 4.06 16
20 C -0.02 -1.16 5.49 84.86 0.47 -0.70 16
21 N -0.91 -58.25 13.67 21.65 0.30 -57.96 16
22 Si 1.14 49.00 29.92 68.60 2.05 51.06 16
23 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16
24 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16
25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16
26 C 0.06 0.88 4.93 86.33 0.43 1.30 16
27 O -0.21 -4.17 10.78 -3.78 -0.04 -4.21 16
28 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16
29 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16
30 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16
31 H 0.20 2.13 8.06 -2.91 -0.02 2.11 16
32 H 0.10 0.56 8.12 -2.39 -0.02 0.54 16
33 H 0.10 1.03 7.98 -2.39 -0.02 1.01 16
34 H 0.08 1.11 6.01 -2.39 -0.01 1.09 16
35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16
36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16
37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16
38 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16
39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16
40 H 0.42 6.41 8.60 -92.71 -0.80 5.61 16
41 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16
42 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16
43 H 0.26 17.27 7.13 -92.71 -0.66 16.61 16
44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16
45 H 0.09 1.17 8.01 -2.39 -0.02 1.15 16
Total: -1.00 -85.09 385.07 -1.84 -86.92
By element:
Atomic # 1 Polarization: 18.58 SS G_CDS: 0.31 Total: 18.89 kcal
Atomic # 6 Polarization: -18.14 SS G_CDS: 6.56 Total: -11.58 kcal
Atomic # 7 Polarization: -93.38 SS G_CDS: -9.57 Total: -102.95 kcal
Atomic # 8 Polarization: -30.23 SS G_CDS: -0.09 Total: -30.32 kcal
Atomic # 14 Polarization: 49.00 SS G_CDS: 2.05 Total: 51.06 kcal
Atomic # 16 Polarization: -10.92 SS G_CDS: -1.11 Total: -12.02 kcal
Total: -85.09 -1.84 -86.92 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567770751.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.471 kcal
(2) G-P(sol) polarization free energy of solvation -85.085 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.614 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.836 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.921 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.451 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds