Wall clock time and date at job start Tue Mar 31 2020 23:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47101 * 2 1 4 4 N 1.30174 * 126.80325 * 270.16385 * 3 2 1 5 5 O 1.20921 * 111.60332 * 180.25574 * 4 3 2 6 6 C 1.34047 * 111.56642 * 359.74585 * 5 4 3 7 7 C 1.35444 * 106.44601 * 0.02562 * 6 5 4 8 8 C 1.50704 * 128.00832 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47165 * 260.02478 * 8 7 6 10 10 C 1.46901 * 111.00143 * 174.95716 * 9 8 7 11 11 C 1.52999 * 115.54461 * 279.36538 * 10 9 8 12 12 N 1.46504 * 109.47372 * 325.03270 * 11 10 9 13 13 C 1.34775 * 119.99916 * 174.96025 * 12 11 10 14 14 O 1.21287 * 119.99958 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00012 * 180.02562 * 13 12 11 16 16 S 1.81006 * 109.47332 * 179.97438 * 15 13 12 17 17 C 1.76195 * 99.99894 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00534 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00011 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99873 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00078 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47283 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46585 * 120.00503 * 21 19 17 24 24 H 1.48498 * 109.46999 * 239.99995 * 21 19 17 25 25 C 1.52993 * 117.49867 * 133.65702 * 10 9 8 26 26 C 1.52992 * 117.49890 * 65.02999 * 10 9 8 27 27 H 1.08994 * 109.47508 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46701 * 300.00139 * 1 2 3 29 29 H 1.09004 * 109.47124 * 59.99450 * 1 2 3 30 30 H 1.08997 * 109.47178 * 240.00062 * 2 1 3 31 31 H 1.08998 * 109.46902 * 120.00156 * 2 1 3 32 32 H 1.08004 * 126.77497 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.46855 * 20.02217 * 8 7 6 34 34 H 1.09000 * 109.47230 * 140.02317 * 8 7 6 35 35 H 1.00897 * 110.99638 * 298.91392 * 9 8 7 36 36 H 1.08993 * 109.47368 * 85.04083 * 11 10 9 37 37 H 1.09007 * 109.46860 * 205.03861 * 11 10 9 38 38 H 0.96997 * 119.99999 * 354.96350 * 12 11 10 39 39 H 1.09004 * 109.47171 * 299.99590 * 15 13 12 40 40 H 1.09000 * 109.47043 * 59.99763 * 15 13 12 41 41 H 0.96997 * 119.99944 * 180.02562 * 20 19 17 42 42 H 1.09001 * 117.50119 * 359.97438 * 25 10 9 43 43 H 1.08999 * 117.50124 * 145.02524 * 25 10 9 44 44 H 1.09005 * 117.50027 * 214.97999 * 26 10 9 45 45 H 1.09003 * 117.49872 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2895 2.1571 -1.0423 5 8 2.6840 3.2552 -0.7253 6 6 2.7358 3.3946 0.6069 7 6 2.3153 2.2191 1.1321 8 6 2.1843 1.8464 2.5864 9 7 3.3475 1.0470 2.9938 10 6 3.3144 0.7659 4.4352 11 6 3.8086 1.8967 5.3396 12 7 4.9050 2.6078 4.6773 13 6 5.4325 3.7109 5.2444 14 8 4.9992 4.1150 6.3027 15 6 6.5599 4.4427 4.5630 16 16 7.0449 5.8704 5.5643 17 6 8.3399 6.5211 4.5623 18 1 8.6038 6.0322 3.6362 19 6 9.0209 7.6622 4.9631 20 7 8.6997 8.2579 6.0921 21 14 10.3943 8.3517 3.9011 22 1 10.5590 7.5041 2.6930 23 1 10.0541 9.7376 3.4904 24 1 11.6613 8.3620 4.6756 25 6 3.5954 -0.6703 4.8815 26 6 2.1739 -0.1096 4.9582 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.0508 4.2712 1.1536 33 1 2.1364 2.7524 3.1907 34 1 1.2744 1.2642 2.7318 35 1 3.4039 0.1928 2.4599 36 1 2.9907 2.5903 5.5340 37 1 4.1631 1.4795 6.2822 38 1 5.2513 2.2849 3.8308 39 1 7.4118 3.7723 4.4488 40 1 6.2311 4.7829 3.5810 41 1 9.1753 9.0556 6.3720 42 1 3.8044 -1.4067 4.1055 43 1 4.1326 -0.8099 5.8196 44 1 1.7759 0.1197 5.9467 45 1 1.4478 -0.4767 4.2327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569391445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:21 Heat of formation + Delta-G solvation = 44.259824 kcal Electronic energy + Delta-G solvation = -26601.363121 eV Core-core repulsion = 22749.125456 eV Total energy + Delta-G solvation = -3852.237665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.16372 -39.72920 -38.47605 -36.29850 -34.09699 -33.83583 -32.40178 -31.66042 -31.32273 -29.70287 -26.56546 -26.17961 -25.37622 -24.78677 -22.97530 -21.63737 -21.19950 -20.23986 -20.02390 -17.84096 -17.75881 -17.62954 -16.66633 -16.39236 -16.03735 -15.53480 -15.15147 -14.94892 -14.77823 -14.66638 -14.42464 -14.03552 -13.83438 -13.37609 -13.34060 -13.26067 -13.01406 -12.96386 -12.53171 -12.19936 -12.00922 -11.96880 -11.84518 -11.74442 -11.32272 -11.08632 -11.05112 -10.98915 -10.72877 -10.50005 -10.19488 -9.77960 -9.74514 -9.34485 -9.05171 -8.88115 -8.73479 -8.19403 -6.46713 -6.19419 -3.89290 1.26673 1.86950 2.99235 3.04359 3.17160 3.23466 3.24703 3.31867 3.40992 3.63077 3.81408 3.85815 4.15476 4.23156 4.33279 4.37045 4.45669 4.55475 4.66007 4.78213 4.84431 4.96713 5.15886 5.16235 5.20364 5.22896 5.31269 5.33517 5.37845 5.44390 5.46611 5.57287 5.58036 5.60201 5.65572 5.67167 5.80117 5.82223 5.95482 6.20391 6.43690 6.74183 6.87148 7.62750 7.90146 8.02502 8.38248 8.71675 9.26298 10.88038 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.002657 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.036419 B =10534.604471 C =12438.024068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C 0.024 3.976 4 N -0.366 5.366 5 O 0.098 5.902 6 C -0.031 4.031 7 C -0.201 4.201 8 C 0.141 3.859 9 N -0.645 5.645 10 C 0.039 3.961 11 C 0.172 3.828 12 N -0.724 5.724 13 C 0.529 3.471 14 O -0.525 6.525 15 C -0.151 4.151 16 S -0.062 6.062 17 C -0.533 4.533 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.167 4.167 26 C -0.203 4.203 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.219 0.781 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.345 0.655 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.408 0.592 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.267 0.733 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.816 -20.382 -9.621 28.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C -0.136 4.136 4 N -0.071 5.071 5 O 0.034 5.966 6 C -0.113 4.113 7 C -0.205 4.205 8 C 0.012 3.988 9 N -0.275 5.275 10 C -0.054 4.054 11 C 0.046 3.954 12 N -0.379 5.379 13 C 0.315 3.685 14 O -0.400 6.400 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.681 4.681 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.205 4.205 26 C -0.243 4.243 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.236 0.764 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.164 0.836 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.244 0.756 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.156 -19.193 -9.019 27.277 hybrid contribution 0.875 -0.882 -1.406 1.876 sum -16.281 -20.075 -10.425 27.871 Atomic orbital electron populations 1.21728 0.93923 1.02302 1.02538 1.19896 0.96407 0.88394 1.03489 1.23463 1.02443 0.99097 0.88631 1.73846 1.16074 0.92925 1.24249 1.84849 1.61879 1.26702 1.23206 1.25959 1.00682 1.01390 0.83271 1.21062 1.08228 0.94381 0.96862 1.20038 0.91410 0.98794 0.88556 1.60074 1.41845 1.24062 1.01506 1.21892 1.02635 0.92281 0.88576 1.20607 0.90051 0.91400 0.93308 1.45801 1.36962 1.28592 1.26544 1.20308 0.83222 0.79753 0.85185 1.90697 1.61253 1.65971 1.22084 1.23499 0.98582 1.03685 1.04360 1.85377 1.44400 1.24225 1.29542 1.22910 1.20830 1.14764 1.09630 0.90904 1.24993 0.97391 0.95784 0.95471 1.70031 1.40288 1.19298 1.20738 0.86127 0.80783 0.78779 0.79879 1.19597 1.20594 1.20607 1.23347 0.98630 0.94810 1.03707 1.23537 0.92067 1.04850 1.03806 0.91636 0.92353 0.92286 0.89993 0.90212 0.76441 0.89094 0.93422 0.83567 0.91302 0.91256 0.75643 0.89373 0.89339 0.92288 0.88474 0.87612 0.87935 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.90 37.16 0.37 -0.46 16 2 C -0.04 -0.28 6.44 -27.88 -0.18 -0.46 16 3 C 0.02 0.22 6.58 -82.10 -0.54 -0.32 16 4 N -0.37 -4.20 12.07 33.42 0.40 -3.79 16 5 O 0.10 1.06 11.20 17.16 0.19 1.26 16 6 C -0.03 -0.27 12.26 29.74 0.36 0.09 16 7 C -0.20 -1.71 5.88 -104.42 -0.61 -2.33 16 8 C 0.14 1.02 5.96 -4.97 -0.03 0.99 16 9 N -0.64 -4.61 5.58 -101.22 -0.57 -5.17 16 10 C 0.04 0.29 2.13 -131.61 -0.28 0.01 16 11 C 0.17 1.88 5.74 -4.04 -0.02 1.86 16 12 N -0.72 -9.50 5.40 -60.29 -0.33 -9.83 16 13 C 0.53 9.71 7.85 -10.99 -0.09 9.62 16 14 O -0.52 -11.73 15.86 5.55 0.09 -11.64 16 15 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.17 9.50 30.94 0.29 -14.87 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 21 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 C -0.17 -1.04 9.87 -26.73 -0.26 -1.31 16 26 C -0.20 -1.21 9.66 -26.73 -0.26 -1.47 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.38 7.73 -51.93 -0.40 -0.02 16 32 H 0.22 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.09 0.76 8.01 -51.93 -0.42 0.34 16 34 H 0.05 0.30 7.62 -51.93 -0.40 -0.09 16 35 H 0.35 2.14 8.13 -39.29 -0.32 1.82 16 36 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 37 H 0.07 0.80 7.91 -51.92 -0.41 0.39 16 38 H 0.41 4.72 7.75 -40.82 -0.32 4.40 16 39 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.10 0.51 8.07 -51.93 -0.42 0.09 16 43 H 0.11 0.69 8.05 -51.93 -0.42 0.27 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.48 7.86 -51.93 -0.41 0.07 16 LS Contribution 398.63 15.07 6.01 6.01 Total: -1.00 -34.84 398.63 -8.68 -43.52 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.85 Total: 2.02 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.12 Total: -9.47 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.25 Total: -44.24 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.28 Total: -10.38 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.84 -8.68 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569391445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.777 kcal (2) G-P(sol) polarization free energy of solvation -34.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds