Wall clock time and date at job start Tue Mar 31 2020 23:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47101 * 2 1 4 4 N 1.30174 * 126.80325 * 270.16385 * 3 2 1 5 5 O 1.20921 * 111.60332 * 180.25574 * 4 3 2 6 6 C 1.34047 * 111.56642 * 359.74585 * 5 4 3 7 7 C 1.35444 * 106.44601 * 0.02562 * 6 5 4 8 8 C 1.50704 * 128.00832 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47165 * 260.02478 * 8 7 6 10 10 C 1.46901 * 111.00143 * 174.95716 * 9 8 7 11 11 C 1.52999 * 115.54461 * 279.36538 * 10 9 8 12 12 N 1.46504 * 109.47372 * 325.03270 * 11 10 9 13 13 C 1.34775 * 119.99916 * 174.96025 * 12 11 10 14 14 O 1.21287 * 119.99958 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00012 * 180.02562 * 13 12 11 16 16 S 1.81006 * 109.47332 * 179.97438 * 15 13 12 17 17 C 1.76195 * 99.99894 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00534 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00011 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99873 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00078 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47283 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46585 * 120.00503 * 21 19 17 24 24 H 1.48498 * 109.46999 * 239.99995 * 21 19 17 25 25 C 1.52993 * 117.49867 * 133.65702 * 10 9 8 26 26 C 1.52992 * 117.49890 * 65.02999 * 10 9 8 27 27 H 1.08994 * 109.47508 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46701 * 300.00139 * 1 2 3 29 29 H 1.09004 * 109.47124 * 59.99450 * 1 2 3 30 30 H 1.08997 * 109.47178 * 240.00062 * 2 1 3 31 31 H 1.08998 * 109.46902 * 120.00156 * 2 1 3 32 32 H 1.08004 * 126.77497 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.46855 * 20.02217 * 8 7 6 34 34 H 1.09000 * 109.47230 * 140.02317 * 8 7 6 35 35 H 1.00897 * 110.99638 * 298.91392 * 9 8 7 36 36 H 1.08993 * 109.47368 * 85.04083 * 11 10 9 37 37 H 1.09007 * 109.46860 * 205.03861 * 11 10 9 38 38 H 0.96997 * 119.99999 * 354.96350 * 12 11 10 39 39 H 1.09004 * 109.47171 * 299.99590 * 15 13 12 40 40 H 1.09000 * 109.47043 * 59.99763 * 15 13 12 41 41 H 0.96997 * 119.99944 * 180.02562 * 20 19 17 42 42 H 1.09001 * 117.50119 * 359.97438 * 25 10 9 43 43 H 1.08999 * 117.50124 * 145.02524 * 25 10 9 44 44 H 1.09005 * 117.50027 * 214.97999 * 26 10 9 45 45 H 1.09003 * 117.49872 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2895 2.1571 -1.0423 5 8 2.6840 3.2552 -0.7253 6 6 2.7358 3.3946 0.6069 7 6 2.3153 2.2191 1.1321 8 6 2.1843 1.8464 2.5864 9 7 3.3475 1.0470 2.9938 10 6 3.3144 0.7659 4.4352 11 6 3.8086 1.8967 5.3396 12 7 4.9050 2.6078 4.6773 13 6 5.4325 3.7109 5.2444 14 8 4.9992 4.1150 6.3027 15 6 6.5599 4.4427 4.5630 16 16 7.0449 5.8704 5.5643 17 6 8.3399 6.5211 4.5623 18 1 8.6038 6.0322 3.6362 19 6 9.0209 7.6622 4.9631 20 7 8.6997 8.2579 6.0921 21 14 10.3943 8.3517 3.9011 22 1 10.5590 7.5041 2.6930 23 1 10.0541 9.7376 3.4904 24 1 11.6613 8.3620 4.6756 25 6 3.5954 -0.6703 4.8815 26 6 2.1739 -0.1096 4.9582 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.0508 4.2712 1.1536 33 1 2.1364 2.7524 3.1907 34 1 1.2744 1.2642 2.7318 35 1 3.4039 0.1928 2.4599 36 1 2.9907 2.5903 5.5340 37 1 4.1631 1.4795 6.2822 38 1 5.2513 2.2849 3.8308 39 1 7.4118 3.7723 4.4488 40 1 6.2311 4.7829 3.5810 41 1 9.1753 9.0556 6.3720 42 1 3.8044 -1.4067 4.1055 43 1 4.1326 -0.8099 5.8196 44 1 1.7759 0.1197 5.9467 45 1 1.4478 -0.4767 4.2327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569391445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:20 Heat of formation + Delta-G solvation = 20.031411 kcal Electronic energy + Delta-G solvation = -26602.413744 eV Core-core repulsion = 22749.125456 eV Total energy + Delta-G solvation = -3853.288287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.88304 -40.75281 -39.52508 -36.92383 -35.13487 -34.61948 -34.55869 -32.24405 -31.98593 -31.20245 -27.83291 -27.27540 -26.89225 -25.32648 -23.47168 -22.28888 -21.82222 -21.58767 -20.83358 -19.71515 -18.52757 -18.33594 -17.72632 -17.54968 -16.89613 -16.86212 -16.38313 -16.26509 -16.04289 -15.50761 -15.21472 -15.05376 -14.58042 -14.56162 -14.48493 -14.25976 -13.96870 -13.80598 -13.54581 -13.34175 -13.13231 -12.90228 -12.88441 -12.58352 -12.49017 -12.39566 -12.34542 -11.91064 -11.70336 -11.64044 -11.14246 -11.13295 -10.88155 -10.86410 -10.44104 -10.23667 -9.95829 -9.42251 -8.63110 -8.32867 -6.09821 0.56293 1.20805 1.30113 1.42273 1.49367 1.60695 1.69752 2.27373 2.32387 2.37500 2.80974 3.01276 3.03974 3.25869 3.36759 3.54610 3.69316 3.77875 3.91503 3.99501 4.08882 4.14548 4.32128 4.32825 4.34275 4.44167 4.56226 4.59470 4.67612 4.70697 4.72694 4.80191 4.82853 4.86948 4.96608 5.03218 5.07242 5.13576 5.22709 5.29977 5.44502 5.50775 5.91961 6.22345 6.35717 6.66109 7.08912 7.31754 7.35339 8.76487 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.002657 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.036419 B =10534.604471 C =12438.024068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C 0.026 3.974 4 N -0.400 5.400 5 O 0.077 5.923 6 C -0.038 4.038 7 C -0.201 4.201 8 C 0.147 3.853 9 N -0.647 5.647 10 C 0.031 3.969 11 C 0.169 3.831 12 N -0.696 5.696 13 C 0.532 3.468 14 O -0.571 6.571 15 C -0.127 4.127 16 S -0.149 6.149 17 C -0.543 4.543 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.160 4.160 26 C -0.188 4.188 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.235 0.765 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.355 0.645 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.419 0.581 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.920 -22.657 -10.921 30.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.133 4.133 4 N -0.109 5.109 5 O 0.016 5.984 6 C -0.120 4.120 7 C -0.205 4.205 8 C 0.019 3.981 9 N -0.279 5.279 10 C -0.062 4.062 11 C 0.045 3.955 12 N -0.350 5.350 13 C 0.317 3.683 14 O -0.450 6.450 15 C -0.279 4.279 16 S 0.078 5.922 17 C -0.691 4.691 18 H 0.099 0.901 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.197 4.197 26 C -0.228 4.228 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.251 0.749 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.176 0.824 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.257 0.743 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.132 0.868 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.270 -21.505 -10.355 29.461 hybrid contribution 0.812 -0.294 -0.990 1.314 sum -16.457 -21.800 -11.344 29.577 Atomic orbital electron populations 1.21704 0.93293 1.03321 1.01796 1.20060 0.96854 0.86824 1.04534 1.23965 1.01101 1.00036 0.88234 1.73842 1.17846 0.93543 1.25622 1.84810 1.62557 1.26853 1.24136 1.26394 1.00451 1.02304 0.82832 1.21237 1.07868 0.94073 0.97366 1.19979 0.92180 0.98648 0.87315 1.59958 1.41907 1.24684 1.01332 1.21569 1.04681 0.91693 0.88222 1.20730 0.88694 0.92081 0.94031 1.45555 1.36462 1.26605 1.26344 1.20012 0.82888 0.80761 0.84592 1.90687 1.62677 1.67560 1.24075 1.23341 0.99940 1.00908 1.03663 1.85533 1.45195 1.28589 1.32853 1.23223 1.20930 1.15183 1.09792 0.90096 1.26104 1.00157 0.96062 0.96835 1.70187 1.41862 1.19939 1.22782 0.84928 0.76949 0.78080 0.78135 1.18136 1.19930 1.19979 1.23426 0.98664 0.93695 1.03909 1.23591 0.92106 1.03098 1.04021 0.89729 0.92193 0.93926 0.90145 0.87928 0.74903 0.90239 0.91831 0.82437 0.92344 0.91701 0.74314 0.87781 0.87416 0.92039 0.86828 0.87988 0.88085 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.90 71.98 0.71 -0.60 16 2 C -0.04 -0.47 6.44 29.85 0.19 -0.28 16 3 C 0.03 0.45 6.58 43.58 0.29 0.74 16 4 N -0.40 -9.09 12.07 -49.56 -0.60 -9.68 16 5 O 0.08 1.68 11.20 71.57 0.80 2.48 16 6 C -0.04 -0.65 12.26 67.17 0.82 0.18 16 7 C -0.20 -3.11 5.88 -19.74 -0.12 -3.23 16 8 C 0.15 1.79 5.96 85.56 0.51 2.30 16 9 N -0.65 -7.35 5.58 -474.15 -2.65 -10.00 16 10 C 0.03 0.38 2.13 3.52 0.01 0.39 16 11 C 0.17 3.47 5.74 86.38 0.50 3.97 16 12 N -0.70 -17.24 5.40 -463.05 -2.50 -19.74 16 13 C 0.53 19.30 7.85 87.66 0.69 19.99 16 14 O -0.57 -26.00 15.86 -3.05 -0.05 -26.04 16 15 C -0.13 -5.04 6.16 71.23 0.44 -4.60 16 16 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 17 C -0.54 -31.05 9.50 67.95 0.65 -30.40 16 18 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 19 C 0.01 0.75 5.49 84.86 0.47 1.21 16 20 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 21 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 C -0.16 -1.46 9.87 30.59 0.30 -1.15 16 26 C -0.19 -1.62 9.66 30.59 0.30 -1.32 16 27 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.60 7.73 -2.39 -0.02 0.58 16 32 H 0.23 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.08 1.18 8.01 -2.38 -0.02 1.16 16 34 H 0.06 0.59 7.62 -2.39 -0.02 0.57 16 35 H 0.35 3.07 8.13 -89.70 -0.73 2.34 16 36 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 37 H 0.06 1.42 7.91 -2.38 -0.02 1.41 16 38 H 0.42 8.70 7.75 -92.71 -0.72 7.98 16 39 H 0.10 3.78 8.14 -2.39 -0.02 3.77 16 40 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 41 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.11 0.71 8.07 -2.39 -0.02 0.69 16 43 H 0.10 1.05 8.05 -2.39 -0.02 1.03 16 44 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.11 0.64 7.86 -2.39 -0.02 0.62 16 Total: -1.00 -78.03 398.63 1.48 -76.56 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -0.43 Total: 18.51 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 5.75 Total: -12.81 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -5.46 Total: -95.12 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.75 Total: -23.56 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -78.03 1.48 -76.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569391445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.589 kcal (2) G-P(sol) polarization free energy of solvation -78.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds