Wall clock time and date at job start Tue Mar 31 2020 23:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47069 * 2 1 4 4 N 1.29427 * 124.80386 * 90.30155 * 3 2 1 5 5 C 1.30942 * 117.36586 * 180.16628 * 4 3 2 6 6 C 1.50698 * 122.90782 * 179.82191 * 5 4 3 7 7 C 1.35661 * 114.18858 * 359.55276 * 5 4 3 8 8 C 1.46684 * 126.13092 * 180.25283 * 7 5 4 9 9 O 1.21685 * 120.00138 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99959 * 180.02562 * 8 7 5 11 11 C 1.46505 * 119.99675 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46684 * 179.97438 * 11 10 8 13 13 O 1.42900 * 110.64543 * 303.14437 * 12 11 10 14 14 C 1.55160 * 110.71918 * 179.97438 * 12 11 10 15 15 C 1.54908 * 101.58412 * 206.13612 * 14 12 11 16 16 N 1.47429 * 104.82845 * 37.01330 * 15 14 12 17 17 C 1.36943 * 125.64839 * 155.92293 * 16 15 14 18 18 H 1.08002 * 119.99351 * 341.69385 * 17 16 15 19 19 C 1.38803 * 120.00129 * 161.70173 * 17 16 15 20 20 N 1.31619 * 120.00071 * 156.09128 * 19 17 16 21 21 Si 1.86798 * 119.99941 * 336.08798 * 19 17 16 22 22 H 1.48500 * 109.47015 * 84.65577 * 21 19 17 23 23 H 1.48509 * 109.47249 * 204.65230 * 21 19 17 24 24 H 1.48496 * 109.47446 * 324.65477 * 21 19 17 25 25 C 1.47017 * 108.70329 * 335.86679 * 16 15 14 26 26 S 1.70950 * 124.80644 * 270.00309 * 3 2 1 27 27 H 1.08993 * 109.47489 * 59.99992 * 1 2 3 28 28 H 1.09000 * 109.47290 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47408 * 299.99981 * 1 2 3 30 30 H 1.08998 * 109.47376 * 240.00327 * 2 1 3 31 31 H 1.09001 * 109.47152 * 120.00024 * 2 1 3 32 32 H 1.09003 * 109.47479 * 269.70955 * 6 5 4 33 33 H 1.08998 * 109.47177 * 149.70694 * 6 5 4 34 34 H 1.09003 * 109.47134 * 29.71035 * 6 5 4 35 35 H 0.96993 * 120.00540 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47460 * 299.99780 * 11 10 8 37 37 H 1.08995 * 109.46919 * 60.00161 * 11 10 8 38 38 H 0.96698 * 114.00206 * 59.29718 * 13 12 11 39 39 H 1.09001 * 111.00595 * 324.20952 * 14 12 11 40 40 H 1.08997 * 111.00103 * 88.02600 * 14 12 11 41 41 H 1.09003 * 110.36902 * 155.84478 * 15 14 12 42 42 H 1.09000 * 110.36889 * 278.06460 * 15 14 12 43 43 H 0.97006 * 119.99843 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.88393 * 241.64422 * 25 16 15 45 45 H 1.08998 * 109.87965 * 120.48100 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2838 2.1154 1.0627 5 6 2.7125 3.3410 0.8932 6 6 3.0393 4.2603 2.0418 7 6 2.8426 3.7097 -0.4058 8 6 3.3047 5.0140 -0.8925 9 8 3.6132 5.8846 -0.1003 10 7 3.3867 5.2485 -2.2172 11 6 3.8477 6.5514 -2.7033 12 6 3.8480 6.5539 -4.2333 13 8 4.6596 5.4919 -4.7387 14 6 4.3317 7.9231 -4.7799 15 6 3.6380 7.9680 -6.1643 16 7 2.3207 7.3428 -5.9467 17 6 1.2013 7.5549 -6.7065 18 1 1.1390 8.4235 -7.3453 19 6 0.1468 6.6538 -6.6554 20 7 -1.0687 7.0444 -6.9750 21 14 0.4529 4.8866 -6.1330 22 1 0.4246 4.7966 -4.6510 23 1 -0.6037 4.0120 -6.7023 24 1 1.7810 4.4463 -6.6303 25 6 2.4082 6.4529 -4.7797 26 16 2.3574 2.3408 -1.4036 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1496 4.8255 2.3193 33 1 3.8289 4.9494 1.7423 34 1 3.3759 3.6707 2.8946 35 1 3.1404 4.5548 -2.8488 36 1 3.1804 7.3323 -2.3385 37 1 4.8582 6.7380 -2.3398 38 1 4.3757 4.6115 -4.4568 39 1 3.9896 8.7403 -4.1449 40 1 5.4165 7.9405 -4.8851 41 1 3.5182 8.9996 -6.4953 42 1 4.2132 7.4000 -6.8955 43 1 -1.8056 6.4145 -6.9397 44 1 2.1967 5.4265 -5.0795 45 1 1.6987 6.7719 -4.0163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569758763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:23 Heat of formation + Delta-G solvation = -12.841049 kcal Electronic energy + Delta-G solvation = -27706.608677 eV Core-core repulsion = 23851.894933 eV Total energy + Delta-G solvation = -3854.713744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.67762 -39.75687 -38.61816 -35.46992 -34.66628 -34.34971 -32.38416 -31.21119 -30.32018 -29.21674 -28.07837 -25.99338 -25.71755 -23.86361 -22.29604 -21.90071 -20.52995 -20.47135 -19.74281 -18.22444 -17.78363 -16.92675 -16.68963 -16.02603 -15.82981 -15.29233 -15.16337 -14.81051 -14.55746 -14.28377 -14.02578 -13.99054 -13.74785 -13.55053 -13.25644 -13.03975 -12.88234 -12.73036 -12.30293 -12.28044 -12.15002 -12.07786 -11.60948 -11.59350 -11.51808 -11.32722 -10.89375 -10.63112 -10.57868 -10.36081 -10.26202 -9.92258 -9.80696 -9.72814 -9.42816 -9.27980 -8.98270 -8.70732 -7.14578 -6.02087 -3.30724 -0.04724 0.86341 1.27673 2.16341 2.85716 2.96193 3.20194 3.36897 3.41145 3.60819 4.17531 4.41362 4.43039 4.48401 4.62914 4.68413 4.74775 4.85093 4.88686 5.00643 5.10912 5.12360 5.35164 5.38266 5.46397 5.49216 5.55421 5.57771 5.65773 5.70849 5.77234 5.79947 5.95324 6.05265 6.08732 6.18046 6.26502 6.36576 6.53332 6.75566 7.11916 7.34819 7.61680 7.64292 7.90722 8.24325 8.75776 9.61358 10.09393 11.14381 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011900 B = 0.003878 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.418345 B = 7217.574775 C = 8748.503784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C 0.070 3.930 4 N -0.477 5.477 5 C 0.154 3.846 6 C -0.090 4.090 7 C -0.303 4.303 8 C 0.602 3.398 9 O -0.521 6.521 10 N -0.723 5.723 11 C 0.106 3.894 12 C 0.103 3.897 13 O -0.542 6.542 14 C -0.113 4.113 15 C 0.135 3.865 16 N -0.605 5.605 17 C -0.242 4.242 18 H 0.096 0.904 19 C 0.022 3.978 20 N -0.904 5.904 21 Si 0.879 3.121 22 H -0.287 1.287 23 H -0.301 1.301 24 H -0.277 1.277 25 C 0.100 3.900 26 S 0.159 5.841 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.394 0.606 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.366 0.634 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.032 0.968 43 H 0.263 0.737 44 H 0.028 0.972 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.920 -12.464 14.958 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.205 4.205 4 N -0.192 5.192 5 C 0.015 3.985 6 C -0.149 4.149 7 C -0.427 4.427 8 C 0.387 3.613 9 O -0.399 6.399 10 N -0.375 5.375 11 C -0.018 4.018 12 C 0.061 3.939 13 O -0.347 6.347 14 C -0.151 4.151 15 C 0.009 3.991 16 N -0.332 5.332 17 C -0.369 4.369 18 H 0.113 0.887 19 C -0.177 4.177 20 N -0.547 5.547 21 Si 0.711 3.289 22 H -0.215 1.215 23 H -0.230 1.230 24 H -0.203 1.203 25 C -0.025 4.025 26 S 0.417 5.583 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.229 0.771 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.213 0.787 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.045 0.955 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.059 -11.790 14.512 20.777 hybrid contribution -0.368 -1.505 0.756 1.724 sum 8.691 -13.295 15.268 22.032 Atomic orbital electron populations 1.21799 0.92943 1.02982 1.03073 1.20344 0.97153 0.86952 1.04738 1.27461 1.00227 1.01819 0.91007 1.66094 1.16027 1.05909 1.31169 1.20683 0.93802 0.90368 0.93605 1.20679 1.03767 0.96986 0.93421 1.25424 1.19287 1.00685 0.97323 1.16581 0.77433 0.84991 0.82257 1.90783 1.49648 1.44785 1.54662 1.45856 1.68233 1.16995 1.06414 1.22121 1.01139 0.84636 0.93911 1.22562 0.91738 0.89899 0.89696 1.86584 1.55820 1.16514 1.75749 1.22754 1.00807 0.92925 0.98636 1.21627 0.86399 0.97451 0.93591 1.44702 1.07374 1.51423 1.29677 1.18690 0.90544 1.06326 1.21370 0.88685 1.24964 0.95145 0.97951 0.99602 1.69856 0.98454 1.34503 1.51922 0.86996 0.76679 0.87816 0.77441 1.21500 1.22955 1.20321 1.22312 0.93561 0.95246 0.91404 1.84055 1.58383 1.04360 1.11486 0.92061 0.90969 0.91755 0.89168 0.88292 0.89954 0.88089 0.90719 0.77110 0.89526 0.89955 0.78689 0.89522 0.90077 0.92869 0.95062 0.92669 0.95507 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.15 0.37 -0.63 16 2 C -0.05 -0.36 6.51 -27.89 -0.18 -0.54 16 3 C 0.07 0.74 6.64 -13.29 -0.09 0.65 16 4 N -0.48 -5.89 10.50 -7.71 -0.08 -5.97 16 5 C 0.15 1.99 6.79 -83.89 -0.57 1.42 16 6 C -0.09 -1.02 9.69 36.00 0.35 -0.67 16 7 C -0.30 -4.05 6.48 -37.10 -0.24 -4.29 16 8 C 0.60 8.85 7.78 -12.85 -0.10 8.75 16 9 O -0.52 -8.58 14.27 5.20 0.07 -8.50 16 10 N -0.72 -10.08 5.19 -61.62 -0.32 -10.40 16 11 C 0.11 1.51 4.74 -4.04 -0.02 1.49 16 12 C 0.10 1.67 0.93 -88.78 -0.08 1.58 16 13 O -0.54 -8.51 13.09 -35.23 -0.46 -8.97 16 14 C -0.11 -1.75 6.26 -24.58 -0.15 -1.90 16 15 C 0.13 2.62 7.23 -2.53 -0.02 2.60 16 16 N -0.60 -14.44 3.20 -170.08 -0.55 -14.98 16 17 C -0.24 -6.82 10.56 -15.06 -0.16 -6.98 16 18 H 0.10 2.81 8.06 -52.49 -0.42 2.39 16 19 C 0.02 0.64 5.43 -17.43 -0.09 0.55 16 20 N -0.90 -27.64 13.97 55.49 0.78 -26.86 16 21 Si 0.88 22.01 24.40 -169.99 -4.15 17.87 16 22 H -0.29 -6.79 6.83 56.52 0.39 -6.40 16 23 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 24 H -0.28 -6.83 6.90 56.52 0.39 -6.44 16 25 C 0.10 2.10 4.24 -3.07 -0.01 2.09 16 26 S 0.16 1.75 22.31 -107.50 -2.40 -0.65 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.24 6.01 -51.93 -0.31 0.93 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.39 5.14 6.45 -40.82 -0.26 4.88 16 36 H 0.09 1.29 8.06 -51.93 -0.42 0.87 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.37 4.66 7.78 45.56 0.35 5.01 16 39 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 44 H 0.03 0.61 3.46 -51.93 -0.18 0.43 16 45 H 0.05 1.06 7.77 -51.93 -0.40 0.66 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -34.03 374.45 -8.34 -42.37 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.88 Total: 6.36 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.00 Total: 4.11 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.17 Total: -58.21 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.39 Total: -17.48 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.15 Total: 17.87 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.40 Total: -0.65 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.03 -8.34 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569758763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.530 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds