Wall clock time and date at job start Tue Mar 31 2020 23:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47069 * 2 1 4 4 N 1.29427 * 124.80386 * 90.30155 * 3 2 1 5 5 C 1.30942 * 117.36586 * 180.16628 * 4 3 2 6 6 C 1.50698 * 122.90782 * 179.82191 * 5 4 3 7 7 C 1.35661 * 114.18858 * 359.55276 * 5 4 3 8 8 C 1.46684 * 126.13092 * 180.25283 * 7 5 4 9 9 O 1.21685 * 120.00138 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99959 * 180.02562 * 8 7 5 11 11 C 1.46505 * 119.99675 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46684 * 179.97438 * 11 10 8 13 13 O 1.42900 * 110.64543 * 303.14437 * 12 11 10 14 14 C 1.55160 * 110.71918 * 179.97438 * 12 11 10 15 15 C 1.54908 * 101.58412 * 206.13612 * 14 12 11 16 16 N 1.47429 * 104.82845 * 37.01330 * 15 14 12 17 17 C 1.36943 * 125.64839 * 155.92293 * 16 15 14 18 18 H 1.08002 * 119.99351 * 341.69385 * 17 16 15 19 19 C 1.38803 * 120.00129 * 161.70173 * 17 16 15 20 20 N 1.31619 * 120.00071 * 156.09128 * 19 17 16 21 21 Si 1.86798 * 119.99941 * 336.08798 * 19 17 16 22 22 H 1.48500 * 109.47015 * 84.65577 * 21 19 17 23 23 H 1.48509 * 109.47249 * 204.65230 * 21 19 17 24 24 H 1.48496 * 109.47446 * 324.65477 * 21 19 17 25 25 C 1.47017 * 108.70329 * 335.86679 * 16 15 14 26 26 S 1.70950 * 124.80644 * 270.00309 * 3 2 1 27 27 H 1.08993 * 109.47489 * 59.99992 * 1 2 3 28 28 H 1.09000 * 109.47290 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47408 * 299.99981 * 1 2 3 30 30 H 1.08998 * 109.47376 * 240.00327 * 2 1 3 31 31 H 1.09001 * 109.47152 * 120.00024 * 2 1 3 32 32 H 1.09003 * 109.47479 * 269.70955 * 6 5 4 33 33 H 1.08998 * 109.47177 * 149.70694 * 6 5 4 34 34 H 1.09003 * 109.47134 * 29.71035 * 6 5 4 35 35 H 0.96993 * 120.00540 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47460 * 299.99780 * 11 10 8 37 37 H 1.08995 * 109.46919 * 60.00161 * 11 10 8 38 38 H 0.96698 * 114.00206 * 59.29718 * 13 12 11 39 39 H 1.09001 * 111.00595 * 324.20952 * 14 12 11 40 40 H 1.08997 * 111.00103 * 88.02600 * 14 12 11 41 41 H 1.09003 * 110.36902 * 155.84478 * 15 14 12 42 42 H 1.09000 * 110.36889 * 278.06460 * 15 14 12 43 43 H 0.97006 * 119.99843 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.88393 * 241.64422 * 25 16 15 45 45 H 1.08998 * 109.87965 * 120.48100 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2838 2.1154 1.0627 5 6 2.7125 3.3410 0.8932 6 6 3.0393 4.2603 2.0418 7 6 2.8426 3.7097 -0.4058 8 6 3.3047 5.0140 -0.8925 9 8 3.6132 5.8846 -0.1003 10 7 3.3867 5.2485 -2.2172 11 6 3.8477 6.5514 -2.7033 12 6 3.8480 6.5539 -4.2333 13 8 4.6596 5.4919 -4.7387 14 6 4.3317 7.9231 -4.7799 15 6 3.6380 7.9680 -6.1643 16 7 2.3207 7.3428 -5.9467 17 6 1.2013 7.5549 -6.7065 18 1 1.1390 8.4235 -7.3453 19 6 0.1468 6.6538 -6.6554 20 7 -1.0687 7.0444 -6.9750 21 14 0.4529 4.8866 -6.1330 22 1 0.4246 4.7966 -4.6510 23 1 -0.6037 4.0120 -6.7023 24 1 1.7810 4.4463 -6.6303 25 6 2.4082 6.4529 -4.7797 26 16 2.3574 2.3408 -1.4036 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1496 4.8255 2.3193 33 1 3.8289 4.9494 1.7423 34 1 3.3759 3.6707 2.8946 35 1 3.1404 4.5548 -2.8488 36 1 3.1804 7.3323 -2.3385 37 1 4.8582 6.7380 -2.3398 38 1 4.3757 4.6115 -4.4568 39 1 3.9896 8.7403 -4.1449 40 1 5.4165 7.9405 -4.8851 41 1 3.5182 8.9996 -6.4953 42 1 4.2132 7.4000 -6.8955 43 1 -1.8056 6.4145 -6.9397 44 1 2.1967 5.4265 -5.0795 45 1 1.6987 6.7719 -4.0163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569758763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:22 Heat of formation + Delta-G solvation = -39.559233 kcal Electronic energy + Delta-G solvation = -27707.767264 eV Core-core repulsion = 23851.894933 eV Total energy + Delta-G solvation = -3855.872332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67937 -40.90707 -39.87258 -36.99990 -35.54576 -35.30978 -34.34481 -32.13962 -31.78996 -30.55551 -29.29557 -27.46710 -26.52218 -25.47904 -23.18455 -22.90923 -22.09687 -21.74456 -20.84824 -19.26819 -19.11429 -18.55919 -18.07442 -17.08313 -16.88503 -16.77009 -16.13873 -15.92067 -15.77504 -15.56065 -15.38346 -15.25619 -14.89694 -14.55462 -14.50379 -14.44553 -13.99102 -13.88292 -13.62520 -13.57407 -13.32212 -13.02930 -12.99554 -12.64166 -12.51343 -12.48263 -12.23482 -12.17161 -12.13988 -11.92052 -11.55979 -11.30377 -11.04502 -10.86270 -10.79997 -10.73574 -10.38458 -9.86956 -9.13273 -8.22819 -5.48285 -0.94452 0.00674 0.39805 1.19076 1.22251 1.32729 1.43054 1.78304 1.92422 2.36256 2.84316 2.90402 3.00505 3.15928 3.45755 3.57348 3.65448 3.70319 3.70753 3.93244 4.16672 4.21977 4.32843 4.36011 4.47056 4.49400 4.61592 4.64546 4.70447 4.73692 4.75985 4.80098 4.93309 4.93932 4.96158 4.99835 5.07976 5.24568 5.28653 5.28936 5.62540 6.05489 6.05619 6.45973 6.52049 6.69950 6.82332 7.48193 8.04159 8.97195 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011900 B = 0.003878 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.418345 B = 7217.574775 C = 8748.503784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C 0.079 3.921 4 N -0.497 5.497 5 C 0.149 3.851 6 C -0.087 4.087 7 C -0.333 4.333 8 C 0.602 3.398 9 O -0.545 6.545 10 N -0.721 5.721 11 C 0.114 3.886 12 C 0.119 3.881 13 O -0.546 6.546 14 C -0.102 4.102 15 C 0.126 3.874 16 N -0.624 5.624 17 C -0.239 4.239 18 H 0.063 0.937 19 C -0.038 4.038 20 N -0.952 5.952 21 Si 0.944 3.056 22 H -0.267 1.267 23 H -0.307 1.307 24 H -0.269 1.269 25 C 0.094 3.906 26 S 0.178 5.822 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.399 0.601 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.380 0.620 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.054 0.946 42 H 0.030 0.970 43 H 0.263 0.737 44 H 0.021 0.979 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.613 -14.713 16.302 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.196 4.196 4 N -0.212 5.212 5 C 0.010 3.990 6 C -0.146 4.146 7 C -0.457 4.457 8 C 0.388 3.612 9 O -0.425 6.425 10 N -0.373 5.373 11 C -0.009 4.009 12 C 0.077 3.923 13 O -0.352 6.352 14 C -0.140 4.140 15 C 0.002 3.998 16 N -0.351 5.351 17 C -0.368 4.368 18 H 0.081 0.919 19 C -0.233 4.233 20 N -0.599 5.599 21 Si 0.773 3.227 22 H -0.193 1.193 23 H -0.235 1.235 24 H -0.194 1.194 25 C -0.031 4.031 26 S 0.437 5.563 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.234 0.766 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.229 0.771 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.799 -14.055 15.860 23.785 hybrid contribution -0.901 -0.790 0.301 1.235 sum 9.898 -14.845 16.160 24.073 Atomic orbital electron populations 1.21804 0.92593 1.04174 1.02084 1.20596 0.97254 0.84979 1.06510 1.28156 0.98216 1.02797 0.90396 1.66169 1.17218 1.05880 1.31930 1.20951 0.93252 0.90830 0.93942 1.20659 1.03445 0.96850 0.93621 1.25359 1.21109 1.01108 0.98094 1.16744 0.76969 0.85295 0.82149 1.90766 1.50802 1.45724 1.55177 1.45814 1.68141 1.16958 1.06392 1.22005 1.01994 0.84727 0.92207 1.22336 0.88764 0.90548 0.90622 1.86566 1.55318 1.17319 1.76002 1.22761 1.02187 0.93017 0.96028 1.21830 0.84715 0.97007 0.96249 1.44817 1.07847 1.52248 1.30158 1.18652 0.92102 1.05197 1.20824 0.91935 1.25638 0.94779 1.01950 1.00957 1.69989 0.99403 1.35721 1.54755 0.85952 0.76413 0.82064 0.78252 1.19267 1.23537 1.19448 1.22440 0.96709 0.93896 0.90032 1.83901 1.58020 1.03249 1.11112 0.92755 0.88737 0.93028 0.86784 0.87101 0.89813 0.89160 0.89260 0.76562 0.90195 0.88206 0.77067 0.88038 0.87065 0.92759 0.95234 0.92848 0.96193 0.94823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.89 71.98 0.71 -0.90 16 2 C -0.05 -0.58 6.51 29.85 0.19 -0.39 16 3 C 0.08 1.48 6.64 88.46 0.59 2.07 16 4 N -0.50 -11.46 10.50 -178.29 -1.87 -13.33 16 5 C 0.15 3.70 6.79 42.09 0.29 3.99 16 6 C -0.09 -1.91 9.69 71.24 0.69 -1.22 16 7 C -0.33 -8.45 6.48 23.88 0.15 -8.29 16 8 C 0.60 16.91 7.78 86.45 0.67 17.58 16 9 O -0.54 -17.48 14.27 -4.30 -0.06 -17.54 16 10 N -0.72 -18.62 5.19 -467.08 -2.43 -21.04 16 11 C 0.11 2.98 4.74 86.38 0.41 3.39 16 12 C 0.12 3.54 0.93 -9.60 -0.01 3.54 16 13 O -0.55 -15.28 13.09 -148.98 -1.95 -17.23 16 14 C -0.10 -2.86 6.26 31.99 0.20 -2.66 16 15 C 0.13 4.74 7.23 86.85 0.63 5.37 16 16 N -0.62 -29.53 3.20 -692.00 -2.22 -31.75 16 17 C -0.24 -13.77 10.56 84.03 0.89 -12.89 16 18 H 0.06 3.89 8.06 -2.91 -0.02 3.86 16 19 C -0.04 -2.26 5.43 84.86 0.46 -1.80 16 20 N -0.95 -59.99 13.97 21.65 0.30 -59.68 16 21 Si 0.94 45.67 24.40 68.60 1.67 47.34 16 22 H -0.27 -11.83 6.83 99.48 0.68 -11.15 16 23 H -0.31 -14.99 7.11 99.48 0.71 -14.29 16 24 H -0.27 -12.49 6.90 99.48 0.69 -11.80 16 25 C 0.09 3.81 4.24 86.73 0.37 4.17 16 26 S 0.18 3.53 22.31 -56.49 -1.26 2.27 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 2.19 6.01 -2.39 -0.01 2.18 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 35 H 0.40 9.44 6.45 -92.71 -0.60 8.85 16 36 H 0.08 2.23 8.06 -2.39 -0.02 2.21 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.38 8.35 7.78 -74.06 -0.58 7.78 16 39 H 0.10 2.58 8.05 -2.39 -0.02 2.56 16 40 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 44 H 0.02 0.86 3.46 -2.39 -0.01 0.85 16 45 H 0.03 1.46 7.77 -2.39 -0.02 1.44 16 Total: -1.00 -74.87 374.45 -1.76 -76.63 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.19 Total: 22.36 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.24 Total: 11.97 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -6.21 Total: -125.81 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -2.01 Total: -34.77 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.67 Total: 47.34 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.26 Total: 2.27 kcal Total: -74.87 -1.76 -76.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569758763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.074 kcal (2) G-P(sol) polarization free energy of solvation -74.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds