Wall clock time and date at job start Tue Mar 31 2020 22:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99744 * 2 1 4 4 C 1.50694 * 109.46616 * 179.97438 * 3 2 1 5 5 N 1.29433 * 124.80572 * 90.02739 * 4 3 2 6 6 C 1.30943 * 117.36535 * 180.02562 * 5 4 3 7 7 C 1.50704 * 122.90203 * 180.02562 * 6 5 4 8 8 C 1.35662 * 114.19414 * 359.97438 * 6 5 4 9 9 C 1.46682 * 126.13285 * 180.02562 * 8 6 5 10 10 O 1.21684 * 119.99921 * 3.38122 * 9 8 6 11 11 N 1.34783 * 119.99824 * 183.38638 * 9 8 6 12 12 C 1.46498 * 119.99739 * 184.55125 * 11 9 8 13 13 C 1.52995 * 109.47211 * 184.11417 * 12 11 9 14 14 N 1.46501 * 112.90549 * 311.09073 * 13 12 11 15 15 C 1.36935 * 120.00088 * 287.23620 * 14 13 12 16 16 H 1.08001 * 120.00047 * 5.69323 * 15 14 13 17 17 C 1.38813 * 120.00380 * 185.69185 * 15 14 13 18 18 N 1.31619 * 119.99833 * 354.55753 * 17 15 14 19 19 Si 1.86803 * 120.00045 * 174.55694 * 17 15 14 20 20 H 1.48495 * 109.47307 * 5.00692 * 19 17 15 21 21 H 1.48498 * 109.46784 * 125.00887 * 19 17 15 22 22 H 1.48503 * 109.46863 * 245.00499 * 19 17 15 23 23 C 1.53780 * 113.61950 * 179.83933 * 13 12 11 24 24 C 1.53775 * 87.08361 * 220.01645 * 23 13 12 25 25 C 1.53781 * 113.61673 * 82.33724 * 13 12 11 26 26 S 1.70955 * 124.80659 * 270.33754 * 4 3 2 27 27 H 1.09005 * 109.47329 * 300.00246 * 1 2 3 28 28 H 1.09000 * 109.47312 * 60.00214 * 1 2 3 29 29 H 1.09001 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47018 * 59.99954 * 3 2 1 31 31 H 1.08992 * 109.47043 * 299.99599 * 3 2 1 32 32 H 1.08999 * 109.46645 * 269.95381 * 7 6 5 33 33 H 1.08997 * 109.47367 * 29.95930 * 7 6 5 34 34 H 1.09007 * 109.46945 * 149.96026 * 7 6 5 35 35 H 0.96991 * 119.99971 * 4.54634 * 11 9 8 36 36 H 1.08995 * 109.47283 * 64.11222 * 12 11 9 37 37 H 1.09003 * 109.46629 * 304.11223 * 12 11 9 38 38 H 0.97003 * 120.00255 * 107.23172 * 14 13 12 39 39 H 0.96995 * 120.00169 * 179.97438 * 18 17 15 40 40 H 1.09000 * 113.61482 * 105.46442 * 23 13 12 41 41 H 1.09000 * 113.61115 * 334.56916 * 23 13 12 42 42 H 1.08998 * 113.61782 * 139.97391 * 24 23 13 43 43 H 1.08995 * 113.62010 * 270.88380 * 24 23 13 44 44 H 1.08999 * 113.61180 * 25.43801 * 25 13 12 45 45 H 1.08994 * 113.69460 * 254.54591 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.2494 1.1284 -1.0618 6 6 5.5436 1.0253 -0.8917 7 6 6.5167 0.9490 -2.0399 8 6 5.9329 0.9941 0.4075 9 6 7.3121 0.8846 0.8948 10 8 8.2374 0.8739 0.1047 11 7 7.5543 0.7959 2.2177 12 6 8.9338 0.7871 2.7107 13 6 8.9325 0.5765 4.2261 14 7 8.0022 1.4669 4.9248 15 6 8.2944 2.7986 5.0524 16 1 9.1631 3.2104 4.5602 17 6 7.4742 3.6193 5.8143 18 7 6.3588 3.1430 6.3255 19 14 7.9535 5.3998 6.1140 20 1 9.1782 5.7202 5.3379 21 1 6.8463 6.2899 5.6815 22 1 8.2167 5.6046 7.5611 23 6 10.3398 0.5474 4.8454 24 6 9.8359 -0.5954 5.7424 25 6 8.8041 -0.8981 4.6430 26 16 4.4840 1.1014 1.4047 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 6.6704 -0.0939 -2.3172 33 1 6.1159 1.4966 -2.8929 34 1 7.4678 1.3892 -1.7400 35 1 6.8153 0.7379 2.8432 36 1 9.4093 1.7396 2.4767 37 1 9.4856 -0.0218 2.2319 38 1 7.1792 1.1132 5.2969 39 1 5.7858 3.7164 6.8581 40 1 10.5940 1.4540 5.3946 41 1 11.1183 0.2428 4.1459 42 1 10.5662 -1.3916 5.8868 43 1 9.3908 -0.2535 6.6767 44 1 9.1628 -1.5980 3.8883 45 1 7.8190 -1.1601 5.0289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570125049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:32 Heat of formation + Delta-G solvation = -1.425694 kcal Electronic energy + Delta-G solvation = -27258.832400 eV Core-core repulsion = 23404.613662 eV Total energy + Delta-G solvation = -3854.218737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29765 -39.33339 -38.40542 -37.90401 -34.05732 -33.28429 -32.43128 -30.12962 -28.94936 -28.83632 -26.73341 -26.27840 -25.30994 -23.87381 -22.87695 -22.22336 -20.94907 -19.49753 -18.20004 -18.02257 -17.17934 -16.90553 -16.84757 -16.02435 -15.67727 -15.50320 -15.14844 -14.81895 -14.44360 -14.20654 -14.01435 -13.81844 -13.50890 -13.35044 -13.00351 -12.74682 -12.62425 -12.47416 -12.27604 -12.15056 -11.73475 -11.68982 -11.25004 -11.23613 -11.03169 -10.88163 -10.38100 -10.25578 -10.21692 -10.14483 -9.87393 -9.76187 -9.60068 -9.48259 -9.46020 -8.94788 -8.81555 -8.52291 -7.13068 -5.89677 -3.19244 0.21290 1.18754 1.62574 2.39892 3.35275 3.36333 3.39916 3.44342 3.44834 3.57820 4.09686 4.48583 4.64220 4.95007 5.00996 5.02261 5.07543 5.10426 5.15955 5.16322 5.24530 5.28877 5.37207 5.46575 5.46946 5.70042 5.73662 5.81860 5.91103 5.99684 6.12689 6.18098 6.32678 6.35305 6.37308 6.44456 6.68995 6.70436 6.80931 6.94641 7.03554 7.59175 7.65792 7.87614 8.28793 8.46424 9.40648 9.92954 10.28580 11.32287 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.003592 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.360250 B = 7792.187594 C = 8920.482141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.036 3.964 5 N -0.462 5.462 6 C 0.136 3.864 7 C -0.087 4.087 8 C -0.287 4.287 9 C 0.591 3.409 10 O -0.537 6.537 11 N -0.694 5.694 12 C 0.120 3.880 13 C 0.170 3.830 14 N -0.701 5.701 15 C -0.237 4.237 16 H 0.072 0.928 17 C -0.006 4.006 18 N -0.928 5.928 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.146 4.146 24 C -0.127 4.127 25 C -0.145 4.145 26 S 0.221 5.779 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.403 0.597 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.039 -7.334 -10.264 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.239 4.239 5 N -0.178 5.178 6 C -0.003 4.003 7 C -0.146 4.146 8 C -0.412 4.412 9 C 0.376 3.624 10 O -0.417 6.417 11 N -0.344 5.344 12 C -0.007 4.007 13 C 0.077 3.923 14 N -0.342 5.342 15 C -0.367 4.367 16 H 0.090 0.910 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.733 3.267 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.185 4.185 24 C -0.165 4.165 25 C -0.183 4.183 26 S 0.478 5.522 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.239 0.761 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.742 -7.277 -10.123 14.174 hybrid contribution -0.196 1.195 0.028 1.211 sum -6.938 -6.082 -10.096 13.677 Atomic orbital electron populations 1.22808 0.79994 1.03293 1.00390 1.87962 1.20311 1.26284 1.95542 1.20809 0.84425 0.86071 1.02724 1.26787 1.00465 1.04243 0.92404 1.66002 1.04546 1.15743 1.31533 1.20596 0.89703 0.96259 0.93720 1.20643 0.97326 1.03249 0.93369 1.25756 0.98854 1.19189 0.97404 1.16653 0.85636 0.77199 0.82961 1.90728 1.43984 1.51872 1.55155 1.45710 1.10543 1.72397 1.05744 1.21935 0.81242 1.01241 0.96259 1.20856 0.92264 0.90155 0.89003 1.42084 1.21562 1.04967 1.65582 1.19133 1.08492 0.84355 1.24745 0.91034 1.24711 0.97157 0.98171 1.00183 1.69660 1.12835 1.35726 1.39377 0.86203 0.77684 0.85082 0.77752 1.20505 1.21941 1.21786 1.23205 0.96829 0.99518 0.98981 1.22620 0.98076 0.97839 0.97951 1.23194 0.99805 0.96460 0.98828 1.84309 0.95761 1.62823 1.09263 0.93536 0.93650 0.89142 0.90460 0.89923 0.90404 0.91017 0.87934 0.76133 0.91777 0.91966 0.77922 0.93468 0.90423 0.91250 0.92739 0.89933 0.90483 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.37 10.69 -35.23 -0.38 -4.75 16 3 C 0.14 1.49 6.51 36.00 0.23 1.73 16 4 C 0.04 0.50 7.01 -13.29 -0.09 0.41 16 5 N -0.46 -7.13 10.50 -7.70 -0.08 -7.21 16 6 C 0.14 2.16 6.79 -83.89 -0.57 1.59 16 7 C -0.09 -1.20 9.74 36.01 0.35 -0.85 16 8 C -0.29 -4.77 6.48 -37.10 -0.24 -5.01 16 9 C 0.59 10.74 7.77 -12.85 -0.10 10.64 16 10 O -0.54 -10.54 14.24 5.20 0.07 -10.47 16 11 N -0.69 -12.44 5.43 -61.62 -0.33 -12.78 16 12 C 0.12 2.14 5.18 -4.05 -0.02 2.12 16 13 C 0.17 3.07 0.95 -131.01 -0.12 2.94 16 14 N -0.70 -15.51 4.44 -46.48 -0.21 -15.71 16 15 C -0.24 -5.98 9.10 -15.06 -0.14 -6.12 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 18 N -0.93 -25.86 13.07 55.49 0.73 -25.13 16 19 Si 0.90 21.50 29.56 -169.99 -5.02 16.48 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C -0.15 -2.45 7.24 -25.92 -0.19 -2.63 16 24 C -0.13 -1.98 7.99 -25.92 -0.21 -2.19 16 25 C -0.14 -2.24 7.38 -25.92 -0.19 -2.43 16 26 S 0.22 3.22 22.33 -107.50 -2.40 0.82 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.10 1.55 5.94 -51.93 -0.31 1.24 16 35 H 0.40 7.23 7.18 -40.82 -0.29 6.94 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.04 7.92 -51.93 -0.41 0.62 16 38 H 0.39 9.11 7.93 -40.82 -0.32 8.79 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.08 1.47 7.60 -51.93 -0.39 1.07 16 41 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.08 1.06 7.96 -51.93 -0.41 0.65 16 45 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -30.13 388.54 -8.80 -38.93 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.76 Total: 12.68 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.27 Total: 1.30 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.10 Total: -60.84 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.30 Total: -15.22 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -2.40 Total: 0.82 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.13 -8.80 -38.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570125049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.500 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds