Wall clock time and date at job start Tue Mar 31 2020 22:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99744 * 2 1 4 4 C 1.50694 * 109.46616 * 179.97438 * 3 2 1 5 5 N 1.29433 * 124.80572 * 90.02739 * 4 3 2 6 6 C 1.30943 * 117.36535 * 180.02562 * 5 4 3 7 7 C 1.50704 * 122.90203 * 180.02562 * 6 5 4 8 8 C 1.35662 * 114.19414 * 359.97438 * 6 5 4 9 9 C 1.46682 * 126.13285 * 180.02562 * 8 6 5 10 10 O 1.21684 * 119.99921 * 3.38122 * 9 8 6 11 11 N 1.34783 * 119.99824 * 183.38638 * 9 8 6 12 12 C 1.46498 * 119.99739 * 184.55125 * 11 9 8 13 13 C 1.52995 * 109.47211 * 184.11417 * 12 11 9 14 14 N 1.46501 * 112.90549 * 311.09073 * 13 12 11 15 15 C 1.36935 * 120.00088 * 287.23620 * 14 13 12 16 16 H 1.08001 * 120.00047 * 5.69323 * 15 14 13 17 17 C 1.38813 * 120.00380 * 185.69185 * 15 14 13 18 18 N 1.31619 * 119.99833 * 354.55753 * 17 15 14 19 19 Si 1.86803 * 120.00045 * 174.55694 * 17 15 14 20 20 H 1.48495 * 109.47307 * 5.00692 * 19 17 15 21 21 H 1.48498 * 109.46784 * 125.00887 * 19 17 15 22 22 H 1.48503 * 109.46863 * 245.00499 * 19 17 15 23 23 C 1.53780 * 113.61950 * 179.83933 * 13 12 11 24 24 C 1.53775 * 87.08361 * 220.01645 * 23 13 12 25 25 C 1.53781 * 113.61673 * 82.33724 * 13 12 11 26 26 S 1.70955 * 124.80659 * 270.33754 * 4 3 2 27 27 H 1.09005 * 109.47329 * 300.00246 * 1 2 3 28 28 H 1.09000 * 109.47312 * 60.00214 * 1 2 3 29 29 H 1.09001 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47018 * 59.99954 * 3 2 1 31 31 H 1.08992 * 109.47043 * 299.99599 * 3 2 1 32 32 H 1.08999 * 109.46645 * 269.95381 * 7 6 5 33 33 H 1.08997 * 109.47367 * 29.95930 * 7 6 5 34 34 H 1.09007 * 109.46945 * 149.96026 * 7 6 5 35 35 H 0.96991 * 119.99971 * 4.54634 * 11 9 8 36 36 H 1.08995 * 109.47283 * 64.11222 * 12 11 9 37 37 H 1.09003 * 109.46629 * 304.11223 * 12 11 9 38 38 H 0.97003 * 120.00255 * 107.23172 * 14 13 12 39 39 H 0.96995 * 120.00169 * 179.97438 * 18 17 15 40 40 H 1.09000 * 113.61482 * 105.46442 * 23 13 12 41 41 H 1.09000 * 113.61115 * 334.56916 * 23 13 12 42 42 H 1.08998 * 113.61782 * 139.97391 * 24 23 13 43 43 H 1.08995 * 113.62010 * 270.88380 * 24 23 13 44 44 H 1.08999 * 113.61180 * 25.43801 * 25 13 12 45 45 H 1.08994 * 113.69460 * 254.54591 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.2494 1.1284 -1.0618 6 6 5.5436 1.0253 -0.8917 7 6 6.5167 0.9490 -2.0399 8 6 5.9329 0.9941 0.4075 9 6 7.3121 0.8846 0.8948 10 8 8.2374 0.8739 0.1047 11 7 7.5543 0.7959 2.2177 12 6 8.9338 0.7871 2.7107 13 6 8.9325 0.5765 4.2261 14 7 8.0022 1.4669 4.9248 15 6 8.2944 2.7986 5.0524 16 1 9.1631 3.2104 4.5602 17 6 7.4742 3.6193 5.8143 18 7 6.3588 3.1430 6.3255 19 14 7.9535 5.3998 6.1140 20 1 9.1782 5.7202 5.3379 21 1 6.8463 6.2899 5.6815 22 1 8.2167 5.6046 7.5611 23 6 10.3398 0.5474 4.8454 24 6 9.8359 -0.5954 5.7424 25 6 8.8041 -0.8981 4.6430 26 16 4.4840 1.1014 1.4047 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 6.6704 -0.0939 -2.3172 33 1 6.1159 1.4966 -2.8929 34 1 7.4678 1.3892 -1.7400 35 1 6.8153 0.7379 2.8432 36 1 9.4093 1.7396 2.4767 37 1 9.4856 -0.0218 2.2319 38 1 7.1792 1.1132 5.2969 39 1 5.7858 3.7164 6.8581 40 1 10.5940 1.4540 5.3946 41 1 11.1183 0.2428 4.1459 42 1 10.5662 -1.3916 5.8868 43 1 9.3908 -0.2535 6.6767 44 1 9.1628 -1.5980 3.8883 45 1 7.8190 -1.1601 5.0289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570125049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:32 Heat of formation + Delta-G solvation = -22.032286 kcal Electronic energy + Delta-G solvation = -27259.725968 eV Core-core repulsion = 23404.613662 eV Total energy + Delta-G solvation = -3855.112306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54026 -40.68579 -39.72016 -38.78025 -35.49295 -35.15484 -33.53575 -31.92327 -30.20536 -29.82324 -28.08822 -26.97425 -26.72355 -25.67324 -23.93067 -23.56357 -22.31881 -20.80827 -19.64975 -19.19699 -19.05668 -18.16001 -17.65930 -17.15767 -16.85947 -16.58052 -16.48070 -16.19053 -15.90010 -15.63269 -15.40038 -15.18552 -14.97569 -14.81055 -14.28256 -13.92453 -13.69651 -13.54116 -13.34663 -13.28568 -13.05049 -12.99782 -12.91749 -12.47082 -12.40529 -12.36910 -12.07932 -11.98045 -11.68353 -11.44754 -11.25836 -10.99519 -10.86983 -10.76348 -10.72921 -10.68116 -10.09068 -9.86014 -9.00459 -7.92994 -5.19632 -0.96914 0.03434 0.45707 1.20613 1.44862 1.48290 1.54814 2.00187 2.13492 2.54962 2.57269 3.18479 3.38458 3.70059 3.72065 3.76367 3.81416 3.95590 3.96513 4.10343 4.15710 4.21011 4.29184 4.53064 4.58517 4.61672 4.64825 4.70260 4.80870 4.84191 4.88590 4.88794 4.92058 4.97988 5.13362 5.21716 5.33247 5.40677 5.47785 5.63141 5.72181 6.01863 6.30948 6.37094 6.49411 7.04286 7.37717 8.08748 8.33813 9.29494 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.003592 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.360250 B = 7792.187594 C = 8920.482141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.136 3.864 4 C 0.049 3.951 5 N -0.477 5.477 6 C 0.137 3.863 7 C -0.084 4.084 8 C -0.318 4.318 9 C 0.590 3.410 10 O -0.557 6.557 11 N -0.696 5.696 12 C 0.126 3.874 13 C 0.156 3.844 14 N -0.706 5.706 15 C -0.221 4.221 16 H 0.066 0.934 17 C -0.059 4.059 18 N -0.957 5.957 19 Si 0.951 3.049 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.295 1.295 23 C -0.143 4.143 24 C -0.120 4.120 25 C -0.131 4.131 26 S 0.223 5.777 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.402 0.598 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.377 0.623 39 H 0.250 0.750 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.103 0.897 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.418 -8.256 -11.126 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.057 3.943 4 C -0.226 4.226 5 N -0.194 5.194 6 C -0.003 4.003 7 C -0.142 4.142 8 C -0.443 4.443 9 C 0.376 3.624 10 O -0.439 6.439 11 N -0.345 5.345 12 C 0.000 4.000 13 C 0.065 3.935 14 N -0.345 5.345 15 C -0.353 4.353 16 H 0.084 0.916 17 C -0.252 4.252 18 N -0.608 5.608 19 Si 0.783 3.217 20 H -0.199 1.199 21 H -0.226 1.226 22 H -0.222 1.222 23 C -0.183 4.183 24 C -0.157 4.157 25 C -0.169 4.169 26 S 0.481 5.519 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.238 0.762 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.211 0.789 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.122 0.878 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.091 -8.215 -10.997 15.450 hybrid contribution -0.124 1.429 0.211 1.449 sum -7.215 -6.787 -10.786 14.644 Atomic orbital electron populations 1.23039 0.77864 1.04426 1.01722 1.87913 1.22616 1.26492 1.95823 1.21032 0.82195 0.86452 1.04630 1.27476 1.01957 1.01586 0.91607 1.66101 1.04359 1.16956 1.31976 1.20946 0.90317 0.95011 0.94000 1.20646 0.96263 1.04029 0.93312 1.25633 0.98720 1.21720 0.98181 1.16849 0.86219 0.76586 0.82745 1.90706 1.44845 1.52850 1.55491 1.45724 1.10477 1.72491 1.05793 1.21865 0.81406 1.00668 0.96073 1.21141 0.92450 0.91423 0.88504 1.42110 1.22109 1.04528 1.65796 1.19283 1.07287 0.85794 1.22940 0.91567 1.25253 0.97672 1.01015 1.01296 1.69764 1.13780 1.36438 1.40779 0.85402 0.77217 0.81925 0.77202 1.19938 1.22557 1.22192 1.23233 0.96571 0.99079 0.99397 1.22534 0.98484 0.98010 0.96689 1.23171 0.99893 0.94688 0.99136 1.84267 0.95192 1.62942 1.09499 0.92220 0.92278 0.88205 0.88276 0.88239 0.89342 0.89314 0.89387 0.76232 0.94096 0.90161 0.78929 0.94103 0.93060 0.88521 0.89663 0.92237 0.87831 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.58 10.69 -148.98 -1.59 -10.17 16 3 C 0.14 2.64 6.51 71.23 0.46 3.10 16 4 C 0.05 1.30 7.01 88.46 0.62 1.92 16 5 N -0.48 -14.22 10.50 -178.28 -1.87 -16.09 16 6 C 0.14 4.27 6.79 42.10 0.29 4.55 16 7 C -0.08 -2.25 9.74 71.24 0.69 -1.56 16 8 C -0.32 -10.55 6.48 23.88 0.15 -10.39 16 9 C 0.59 21.52 7.77 86.45 0.67 22.19 16 10 O -0.56 -21.92 14.24 -4.30 -0.06 -21.98 16 11 N -0.70 -24.89 5.43 -467.09 -2.54 -27.43 16 12 C 0.13 4.43 5.18 86.38 0.45 4.88 16 13 C 0.16 5.50 0.95 4.13 0.00 5.50 16 14 N -0.71 -31.41 4.44 -300.97 -1.34 -32.75 16 15 C -0.22 -11.29 9.10 84.03 0.76 -10.53 16 16 H 0.07 3.41 7.83 -2.91 -0.02 3.39 16 17 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 18 N -0.96 -54.20 13.07 21.65 0.28 -53.92 16 19 Si 0.95 44.75 29.56 68.60 2.03 46.78 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 23 C -0.14 -4.60 7.24 31.12 0.23 -4.38 16 24 C -0.12 -3.47 7.99 31.12 0.25 -3.23 16 25 C -0.13 -3.76 7.38 31.12 0.23 -3.53 16 26 S 0.22 6.41 22.33 -56.49 -1.26 5.15 16 27 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.09 2.66 5.94 -2.38 -0.01 2.64 16 35 H 0.40 14.51 7.18 -92.71 -0.67 13.85 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 2.53 7.92 -2.39 -0.02 2.51 16 38 H 0.38 18.06 7.93 -92.71 -0.74 17.32 16 39 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 40 H 0.05 1.92 7.60 -2.39 -0.02 1.90 16 41 H 0.10 2.58 8.10 -2.39 -0.02 2.56 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.10 2.47 7.96 -2.39 -0.02 2.45 16 45 H 0.06 1.84 8.12 -2.39 -0.02 1.82 16 Total: -1.00 -64.91 388.54 -0.20 -65.11 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.38 Total: 37.95 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.53 Total: 7.36 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -5.46 Total: -130.19 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -1.65 Total: -32.15 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 6.41 SS G_CDS: -1.26 Total: 5.15 kcal Total: -64.91 -0.20 -65.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570125049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.073 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds