Wall clock time and date at job start Tue Mar 31 2020 22:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30707 * 122.10522 * 2 1 4 4 C 1.30559 * 115.89803 * 180.22063 * 3 2 1 5 5 C 1.47265 * 125.53643 * 179.78129 * 4 3 2 6 6 O 1.21626 * 119.99634 * 179.69323 * 5 4 3 7 7 N 1.34769 * 119.99944 * 359.69584 * 5 4 3 8 8 C 1.46507 * 119.99770 * 185.24049 * 7 5 4 9 9 C 1.53004 * 109.45811 * 54.96510 * 8 7 5 10 10 O 1.42902 * 109.46930 * 54.73841 * 9 8 7 11 11 C 1.53045 * 109.44652 * 174.92571 * 8 7 5 12 12 C 1.53194 * 109.31099 * 58.65560 * 11 8 7 13 13 N 1.46920 * 108.77592 * 54.62831 * 12 11 8 14 14 C 1.36941 * 120.63166 * 126.37140 * 13 12 11 15 15 H 1.07997 * 120.00303 * 210.26738 * 14 13 12 16 16 C 1.38817 * 119.99717 * 30.26540 * 14 13 12 17 17 N 1.31626 * 119.99950 * 15.18120 * 16 14 13 18 18 Si 1.86801 * 120.00209 * 195.18288 * 16 14 13 19 19 H 1.48500 * 109.47097 * 59.99616 * 18 16 14 20 20 H 1.48493 * 109.47040 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46815 * 299.99942 * 18 16 14 22 22 C 1.46925 * 118.74396 * 306.39338 * 13 12 11 23 23 C 1.53034 * 109.46295 * 294.99283 * 8 7 5 24 24 S 1.76093 * 108.91944 * 359.51895 * 4 3 2 25 25 C 1.34226 * 122.10899 * 179.68822 * 2 1 3 26 26 C 1.50702 * 125.45184 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.46950 * 270.31682 * 1 2 3 28 28 H 1.09001 * 109.47184 * 30.31024 * 1 2 3 29 29 H 1.09002 * 109.47474 * 150.31111 * 1 2 3 30 30 H 0.96998 * 120.00485 * 5.24303 * 7 5 4 31 31 H 1.08998 * 109.47043 * 294.74181 * 9 8 7 32 32 H 1.08995 * 109.46815 * 174.74327 * 9 8 7 33 33 H 0.96705 * 113.99697 * 179.97438 * 10 9 8 34 34 H 1.09003 * 109.49251 * 178.60232 * 11 8 7 35 35 H 1.08999 * 109.50084 * 298.70203 * 11 8 7 36 36 H 1.09002 * 109.58004 * 294.84461 * 12 11 8 37 37 H 1.08993 * 109.58594 * 174.41829 * 12 11 8 38 38 H 0.96989 * 119.99776 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.58531 * 293.82183 * 22 13 12 40 40 H 1.08996 * 109.58943 * 173.39430 * 22 13 12 41 41 H 1.08995 * 109.50033 * 61.30759 * 23 8 7 42 42 H 1.09002 * 109.50103 * 181.40741 * 23 8 7 43 43 H 1.09011 * 109.47169 * 179.97438 * 26 25 2 44 44 H 1.08996 * 109.47238 * 299.97413 * 26 25 2 45 45 H 1.09002 * 109.47381 * 59.97881 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2017 1.1072 0.0000 4 6 3.4996 0.9660 -0.0045 5 6 4.4801 2.0648 -0.0100 6 8 5.6709 1.8172 -0.0083 7 7 4.0578 3.3446 -0.0169 8 6 5.0283 4.4355 -0.1383 9 6 5.8801 4.2228 -1.3914 10 8 5.0269 4.0833 -2.5292 11 6 4.2851 5.7689 -0.2473 12 6 3.4069 5.9623 0.9929 13 7 4.2469 5.8358 2.1916 14 6 4.2600 6.8219 3.1417 15 1 5.1520 6.9986 3.7244 16 6 3.1267 7.5945 3.3557 17 7 1.9640 7.2037 2.8783 18 14 3.2517 9.1887 4.3213 19 1 4.1904 10.1115 3.6338 20 1 1.9111 9.8212 4.4081 21 1 3.7534 8.9009 5.6891 22 6 5.0732 4.6315 2.3515 23 6 5.9328 4.4530 1.0960 24 16 3.8871 -0.7517 0.0047 25 6 2.2204 -1.1369 0.0062 26 6 1.6452 -2.5298 0.0132 27 1 -0.3633 0.0057 1.0277 28 1 -0.3633 0.8872 -0.5186 29 1 -0.3634 -0.8928 -0.5090 30 1 3.1115 3.5436 0.0585 31 1 6.4798 3.3202 -1.2742 32 1 6.5379 5.0802 -1.5333 33 1 5.5002 3.9456 -3.3612 34 1 5.0067 6.5832 -0.3127 35 1 3.6588 5.7645 -1.1395 36 1 2.6274 5.2005 1.0110 37 1 2.9524 6.9526 0.9680 38 1 1.1723 7.7437 3.0276 39 1 4.4295 3.7612 2.4804 40 1 5.7181 4.7438 3.2229 41 1 6.4792 3.5121 1.1600 42 1 6.6388 5.2798 1.0180 43 1 2.4565 -3.2580 0.0169 44 1 1.0316 -2.6651 0.9039 45 1 1.0316 -2.6741 -0.8761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570499524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:17 Heat of formation + Delta-G solvation = -43.275958 kcal Electronic energy + Delta-G solvation = -28424.559057 eV Core-core repulsion = 24568.525556 eV Total energy + Delta-G solvation = -3856.033501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75359 -40.83905 -38.95173 -37.45720 -35.67401 -34.48569 -33.56569 -32.02833 -31.65643 -30.68545 -28.44904 -27.37381 -25.77908 -25.64754 -24.03584 -22.94025 -22.15128 -20.62447 -19.95860 -19.17755 -18.77551 -18.24931 -18.00761 -16.85735 -16.74562 -16.45486 -16.03959 -15.87349 -15.63630 -15.26551 -15.00264 -14.82097 -14.63226 -14.37819 -14.12700 -13.96456 -13.86144 -13.74691 -13.33617 -13.29253 -13.18171 -13.01489 -12.97430 -12.64290 -12.57250 -12.30097 -12.09605 -12.03056 -11.86537 -11.61037 -11.48729 -11.20578 -10.95014 -10.58690 -10.52246 -10.46621 -10.07223 -9.60085 -8.65644 -7.87219 -5.35847 -0.81971 0.08253 0.64166 1.25271 1.47519 1.49573 1.56500 2.14255 2.16005 2.51239 3.01336 3.24072 3.30350 3.67187 3.76170 3.89249 3.95634 3.97037 4.03497 4.23433 4.42255 4.52521 4.62654 4.63171 4.67113 4.68276 4.68901 4.79200 4.80124 4.87021 4.88633 4.97575 5.06105 5.06650 5.15985 5.24113 5.34508 5.40948 5.53702 5.63277 5.69637 6.35273 6.39834 6.58345 6.89571 7.04727 7.14760 7.83306 8.37935 9.18875 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003572 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.978402 B = 7837.298169 C = 8917.221839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.021 3.979 3 N -0.438 5.438 4 C -0.057 4.057 5 C 0.601 3.399 6 O -0.556 6.556 7 N -0.674 5.674 8 C 0.190 3.810 9 C 0.073 3.927 10 O -0.579 6.579 11 C -0.125 4.125 12 C 0.183 3.817 13 N -0.604 5.604 14 C -0.269 4.269 15 H 0.065 0.935 16 C -0.045 4.045 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.277 1.277 22 C 0.153 3.847 23 C -0.130 4.130 24 S 0.262 5.738 25 C -0.228 4.228 26 C -0.076 4.076 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.406 0.594 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.393 0.607 34 H 0.076 0.924 35 H 0.072 0.928 36 H -0.003 1.003 37 H 0.056 0.944 38 H 0.250 0.750 39 H -0.001 1.001 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.671 -18.622 -10.960 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 N -0.157 5.157 4 C -0.330 4.330 5 C 0.384 3.616 6 O -0.436 6.436 7 N -0.324 5.324 8 C 0.104 3.896 9 C -0.005 4.005 10 O -0.386 6.386 11 C -0.164 4.164 12 C 0.057 3.943 13 N -0.328 5.328 14 C -0.399 4.399 15 H 0.083 0.917 16 C -0.241 4.241 17 N -0.577 5.577 18 Si 0.797 3.203 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.203 1.203 22 C 0.027 3.973 23 C -0.170 4.170 24 S 0.518 5.482 25 C -0.352 4.352 26 C -0.134 4.134 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.242 0.758 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.242 0.758 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.015 0.985 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.017 0.983 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.116 0.884 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.687 -18.613 -10.489 21.533 hybrid contribution -1.207 1.255 0.394 1.785 sum 1.480 -17.358 -10.095 20.134 Atomic orbital electron populations 1.20472 0.85179 1.04296 1.03584 1.20623 1.00113 0.85880 1.04999 1.66660 1.04151 1.33041 1.11841 1.27360 0.93567 0.98415 1.13704 1.16846 0.86363 0.82022 0.76328 1.90707 1.15759 1.84206 1.52894 1.45747 1.11479 1.04293 1.70847 1.20432 0.88932 0.86117 0.94146 1.22525 0.91892 1.01279 0.84843 1.86455 1.37639 1.96058 1.18496 1.22223 1.00057 0.95084 0.99061 1.20505 0.90518 0.99264 0.83996 1.44233 1.50460 1.17835 1.20241 1.19465 0.95754 1.09965 1.14699 0.91716 1.25856 0.94426 1.03211 1.00596 1.70169 0.98452 1.38640 1.50486 0.85332 0.76337 0.79911 0.78761 1.20201 1.21992 1.20312 1.20843 0.92471 0.88109 0.95885 1.22226 0.97891 1.02552 0.94316 1.83624 1.03360 0.98727 1.62511 1.26125 0.97867 1.03259 1.07916 1.20500 1.01831 0.86032 1.05075 0.90241 0.91567 0.87738 0.75848 0.92005 0.91265 0.75836 0.90574 0.90942 0.98487 0.92534 0.94066 0.98272 0.92898 0.90322 0.90350 0.89641 0.88419 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.02 71.24 0.71 -0.70 16 2 C 0.02 0.53 6.68 41.81 0.28 0.81 16 3 N -0.44 -14.25 10.22 -178.24 -1.82 -16.07 16 4 C -0.06 -1.87 7.46 87.26 0.65 -1.22 16 5 C 0.60 21.70 7.22 86.62 0.63 22.33 16 6 O -0.56 -20.67 13.25 -4.11 -0.05 -20.73 16 7 N -0.67 -25.07 3.90 -426.17 -1.66 -26.73 16 8 C 0.19 6.75 0.44 3.63 0.00 6.75 16 9 C 0.07 2.16 5.54 71.98 0.40 2.56 16 10 O -0.58 -16.20 12.94 -148.98 -1.93 -18.13 16 11 C -0.12 -4.85 4.89 30.67 0.15 -4.70 16 12 C 0.18 8.96 5.00 86.36 0.43 9.39 16 13 N -0.60 -31.11 2.98 -699.10 -2.09 -33.20 16 14 C -0.27 -15.04 9.57 84.03 0.80 -14.23 16 15 H 0.07 3.53 7.87 -2.91 -0.02 3.51 16 16 C -0.04 -2.53 4.94 84.86 0.42 -2.12 16 17 N -0.93 -55.59 11.25 21.65 0.24 -55.35 16 18 Si 0.97 45.22 29.58 68.60 2.03 47.25 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 C 0.15 6.87 6.26 86.36 0.54 7.41 16 23 C -0.13 -4.85 4.74 30.67 0.15 -4.70 16 24 S 0.26 6.19 22.99 -56.49 -1.30 4.89 16 25 C -0.23 -4.56 6.36 24.77 0.16 -4.40 16 26 C -0.08 -0.76 9.45 71.24 0.67 -0.09 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 1.20 7.33 -2.39 -0.02 1.18 16 30 H 0.41 16.21 6.79 -92.71 -0.63 15.58 16 31 H 0.06 1.91 6.17 -2.39 -0.01 1.89 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.39 6.99 9.12 -74.05 -0.68 6.31 16 34 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.07 2.69 7.80 -2.39 -0.02 2.67 16 36 H 0.00 -0.15 6.84 -2.39 -0.02 -0.17 16 37 H 0.06 3.11 6.17 -2.39 -0.01 3.10 16 38 H 0.25 14.49 8.31 -92.72 -0.77 13.72 16 39 H 0.00 -0.03 7.74 -2.38 -0.02 -0.05 16 40 H 0.05 2.34 7.93 -2.39 -0.02 2.32 16 41 H 0.08 2.88 6.40 -2.39 -0.02 2.86 16 42 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.10 0.69 7.93 -2.39 -0.02 0.67 16 Total: -1.00 -71.72 370.39 -0.85 -72.57 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -0.27 Total: 28.40 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 5.99 Total: 17.09 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -5.33 Total: -131.35 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -1.98 Total: -38.85 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -1.30 Total: 4.89 kcal Total: -71.72 -0.85 -72.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570499524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.298 kcal (2) G-P(sol) polarization free energy of solvation -71.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds