Wall clock time and date at job start Tue Mar 31 2020 22:57:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.28903 * 124.84217 * 2 1
4 4 C 1.31899 * 117.18661 * 179.75189 * 3 2 1
5 5 C 1.50697 * 122.84974 * 180.35438 * 4 3 2
6 6 C 1.53001 * 109.46916 * 270.18727 * 5 4 3
7 7 C 1.53004 * 109.47458 * 65.00035 * 6 5 4
8 8 C 1.53004 * 109.46982 * 185.00083 * 6 5 4
9 9 C 1.34339 * 114.29964 * 0.52571 * 4 3 2
10 10 N 1.39862 * 126.06557 * 179.79359 * 9 4 3
11 11 C 1.34782 * 119.99956 * 179.71837 * 10 9 4
12 12 O 1.21594 * 120.00048 * 359.97438 * 11 10 9
13 13 N 1.34778 * 119.99880 * 179.97438 * 11 10 9
14 14 C 1.47577 * 134.49071 * 180.02562 * 13 11 10
15 15 C 1.53947 * 86.11678 * 155.35009 * 14 13 11
16 16 O 1.42893 * 113.74417 * 269.15203 * 15 14 13
17 17 C 1.50710 * 113.73764 * 137.94968 * 15 14 13
18 18 H 1.07994 * 120.00413 * 6.94299 * 17 15 14
19 19 C 1.37873 * 119.99460 * 186.94705 * 17 15 14
20 20 N 1.31516 * 119.99596 * 178.17803 * 19 17 15
21 21 Si 1.86799 * 120.00523 * 358.16911 * 19 17 15
22 22 H 1.48502 * 109.47432 * 270.00789 * 21 19 17
23 23 H 1.48509 * 109.46693 * 30.00560 * 21 19 17
24 24 H 1.48498 * 109.47418 * 149.99892 * 21 19 17
25 25 C 1.47812 * 134.45776 * 359.85643 * 13 11 10
26 26 S 1.70954 * 124.84094 * 180.02562 * 2 1 3
27 27 H 1.08997 * 109.47574 * 179.97438 * 1 2 3
28 28 H 1.09008 * 109.46839 * 299.97926 * 1 2 3
29 29 H 1.09004 * 109.47475 * 59.97363 * 1 2 3
30 30 H 1.09005 * 109.47526 * 30.18346 * 5 4 3
31 31 H 1.09001 * 109.47407 * 150.18597 * 5 4 3
32 32 H 1.09001 * 109.47402 * 304.99886 * 6 5 4
33 33 H 1.09001 * 109.46760 * 300.00369 * 7 6 5
34 34 H 1.09001 * 109.46935 * 59.99565 * 7 6 5
35 35 H 1.08998 * 109.46933 * 180.02562 * 7 6 5
36 36 H 1.08999 * 109.47279 * 60.00202 * 8 6 5
37 37 H 1.09000 * 109.46843 * 179.97438 * 8 6 5
38 38 H 1.08994 * 109.47256 * 299.99561 * 8 6 5
39 39 H 0.97001 * 119.99846 * 359.70352 * 10 9 4
40 40 H 1.08996 * 113.77269 * 41.04774 * 14 13 11
41 41 H 1.09003 * 113.86877 * 269.66641 * 14 13 11
42 42 H 0.96694 * 114.00533 * 162.49871 * 16 15 14
43 43 H 0.96997 * 120.00619 * 358.27359 * 20 19 17
44 44 H 1.09000 * 113.76478 * 90.38273 * 25 13 11
45 45 H 1.09001 * 113.83768 * 318.92464 * 25 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2434 1.0579 0.0000
4 6 3.5507 0.8822 0.0051
5 6 4.5294 2.0281 0.0136
6 6 4.8634 2.4241 -1.4261
7 6 3.6077 2.9695 -2.1094
8 6 5.9494 3.5019 -1.4196
9 6 3.9355 -0.4048 -0.0016
10 7 5.2545 -0.8699 -0.0025
11 6 5.5020 -2.1948 -0.0038
12 8 4.5785 -2.9858 -0.0038
13 7 6.7731 -2.6429 -0.0051
14 6 7.3984 -3.9796 -0.0072
15 6 8.6183 -3.2928 -0.6477
16 8 8.5887 -3.2827 -2.0763
17 6 9.9388 -3.7589 -0.0906
18 1 9.9706 -4.5859 0.6032
19 6 11.1064 -3.1295 -0.4669
20 7 12.2549 -3.5128 0.0466
21 14 11.0571 -1.7325 -1.7060
22 1 11.2035 -2.2821 -3.0778
23 1 9.7599 -1.0179 -1.5948
24 1 12.1683 -0.7868 -1.4303
25 6 8.1002 -1.9921 -0.0082
26 16 2.4836 -1.4031 -0.0006
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3633 0.5136 0.8902
29 1 -0.3634 0.5142 -0.8898
30 1 4.0878 2.8795 0.5314
31 1 5.4412 1.7234 0.5274
32 1 5.2222 1.5500 -1.9695
33 1 2.8341 2.2016 -2.1139
34 1 3.2489 3.8435 -1.5660
35 1 3.8456 3.2512 -3.1352
36 1 6.8439 3.1134 -0.9329
37 1 6.1876 3.7837 -2.4453
38 1 5.5906 4.3760 -0.8763
39 1 5.9912 -0.2388 -0.0023
40 1 6.9029 -4.6955 -0.6629
41 1 7.5912 -4.3779 0.9889
42 1 9.1889 -2.6396 -2.4776
43 1 12.2780 -4.2214 0.7085
44 1 8.4991 -1.8031 0.9884
45 1 8.1638 -1.1242 -0.6647
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001649893913.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:57:32
Heat of formation + Delta-G solvation = -22.408374 kcal
Electronic energy + Delta-G solvation = -27803.026327 eV
Core-core repulsion = 23947.897712 eV
Total energy + Delta-G solvation = -3855.128615 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.95154 -41.03681 -39.80002 -37.10567 -36.22818 -36.07592 -34.67932 -32.70126
-30.68066 -29.34070 -28.01089 -27.87341 -27.23096 -26.38977 -23.82822 -22.57613
-21.43133 -21.14851 -20.70001 -20.03101 -19.35915 -18.19337 -17.92642 -17.61947
-17.22260 -16.60975 -16.32978 -15.92357 -15.87286 -15.24163 -15.02756 -15.00926
-14.71099 -14.48907 -14.33505 -14.04098 -13.95562 -13.71269 -13.49249 -13.27388
-13.14468 -13.04637 -12.66426 -12.63857 -12.43686 -12.15727 -12.12805 -11.90663
-11.79033 -11.73655 -11.62922 -11.54020 -11.28551 -10.87764 -10.60125 -10.37912
-10.09831 -9.77588 -8.94506 -8.80966 -6.60624 -0.23763 0.14774 0.76284
1.25269 1.35991 1.47718 1.59799 1.62195 2.01746 2.41152 2.53671
2.83696 3.22069 3.32211 3.71342 3.87790 3.94244 4.00551 4.11408
4.21301 4.27938 4.32882 4.41082 4.56250 4.59834 4.63266 4.64742
4.73574 4.74786 4.84309 4.84726 4.87574 4.95213 5.03561 5.07534
5.11384 5.26770 5.36560 5.46353 5.48107 5.57351 5.77642 5.91108
6.38365 6.63554 6.73869 6.82313 7.10033 7.25776 8.53725
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.013899 B = 0.003589 C = 0.002990
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2014.050168 B = 7798.717581 C = 9363.153118
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 C -0.011 4.011
3 N -0.461 5.461
4 C 0.017 3.983
5 C -0.034 4.034
6 C -0.089 4.089
7 C -0.136 4.136
8 C -0.144 4.144
9 C 0.000 4.000
10 N -0.629 5.629
11 C 0.714 3.286
12 O -0.600 6.600
13 N -0.645 5.645
14 C 0.149 3.851
15 C 0.190 3.810
16 O -0.563 6.563
17 C -0.611 4.611
18 H 0.038 0.962
19 C -0.011 4.011
20 N -0.926 5.926
21 Si 1.070 2.930
22 H -0.262 1.262
23 H -0.227 1.227
24 H -0.284 1.284
25 C 0.071 3.929
26 S 0.199 5.801
27 H 0.090 0.910
28 H 0.094 0.906
29 H 0.094 0.906
30 H 0.088 0.912
31 H 0.080 0.920
32 H 0.053 0.947
33 H 0.039 0.961
34 H 0.060 0.940
35 H 0.055 0.945
36 H 0.061 0.939
37 H 0.060 0.940
38 H 0.064 0.936
39 H 0.423 0.577
40 H 0.072 0.928
41 H 0.099 0.901
42 H 0.362 0.638
43 H 0.259 0.741
44 H 0.105 0.895
45 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.899 14.496 -1.449 23.078
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.290 4.290
3 N -0.176 5.176
4 C -0.118 4.118
5 C -0.074 4.074
6 C -0.108 4.108
7 C -0.193 4.193
8 C -0.201 4.201
9 C -0.218 4.218
10 N -0.278 5.278
11 C 0.417 3.583
12 O -0.481 6.481
13 N -0.381 5.381
14 C 0.026 3.974
15 C 0.149 3.851
16 O -0.373 6.373
17 C -0.648 4.648
18 H 0.057 0.943
19 C -0.212 4.212
20 N -0.560 5.560
21 Si 0.891 3.109
22 H -0.188 1.188
23 H -0.152 1.152
24 H -0.211 1.211
25 C -0.052 4.052
26 S 0.451 5.549
27 H 0.109 0.891
28 H 0.113 0.887
29 H 0.112 0.888
30 H 0.107 0.893
31 H 0.098 0.902
32 H 0.072 0.928
33 H 0.058 0.942
34 H 0.079 0.921
35 H 0.074 0.926
36 H 0.080 0.920
37 H 0.079 0.921
38 H 0.083 0.917
39 H 0.263 0.737
40 H 0.090 0.910
41 H 0.117 0.883
42 H 0.214 0.786
43 H 0.068 0.932
44 H 0.123 0.877
45 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -18.640 13.955 -2.150 23.384
hybrid contribution 0.987 -0.548 1.142 1.606
sum -17.653 13.407 -1.009 22.190
Atomic orbital electron populations
1.20458 0.82921 1.04459 1.04898 1.27746 1.03378 0.92596 1.05279
1.66176 1.03263 1.32138 1.16000 1.20201 0.91250 0.91915 1.08478
1.20250 0.95122 0.94116 0.97935 1.21073 0.96647 0.98659 0.94465
1.21730 0.96819 1.00769 1.00018 1.21821 0.97655 0.98171 1.02473
1.23375 0.89605 0.96398 1.12470 1.41627 1.05060 1.05828 1.75292
1.15530 0.82442 0.82135 0.78215 1.90811 1.42697 1.54666 1.59974
1.49146 1.02382 1.11483 1.75104 1.23170 0.88639 0.85021 1.00557
1.20474 0.92978 0.92770 0.78873 1.86478 1.66505 1.63775 1.20578
1.22347 0.92628 1.19805 1.30069 0.94327 1.27278 0.91345 1.02512
1.00036 1.70909 1.27784 1.29456 1.27899 0.83879 0.78317 0.73929
0.74782 1.18808 1.15154 1.21091 1.24705 0.78166 0.99341 1.02940
1.85045 0.93102 1.07650 1.69102 0.89124 0.88701 0.88793 0.89303
0.90185 0.92804 0.94193 0.92109 0.92617 0.92005 0.92079 0.91676
0.73737 0.90986 0.88346 0.78617 0.93218 0.87715 0.88454
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.99 10.47 71.24 0.75 -0.25 16
2 C -0.01 -0.27 7.37 88.54 0.65 0.39 16
3 N -0.46 -11.83 9.66 -178.94 -1.73 -13.56 16
4 C 0.02 0.45 5.30 41.66 0.22 0.67 16
5 C -0.03 -0.68 4.87 29.85 0.15 -0.54 16
6 C -0.09 -1.66 2.91 -10.79 -0.03 -1.69 16
7 C -0.14 -2.60 8.97 71.98 0.65 -1.95 16
8 C -0.14 -2.10 9.19 71.98 0.66 -1.43 16
9 C 0.00 0.00 7.18 82.52 0.59 0.59 16
10 N -0.63 -18.48 5.41 -319.52 -1.73 -20.21 16
11 C 0.71 25.81 8.73 179.05 1.56 27.37 16
12 O -0.60 -24.73 14.70 -4.01 -0.06 -24.79 16
13 N -0.64 -23.30 3.61 -857.78 -3.10 -26.40 16
14 C 0.15 5.85 8.23 86.49 0.71 6.56 16
15 C 0.19 7.94 1.06 -10.88 -0.01 7.93 16
16 O -0.56 -23.70 13.26 -148.98 -1.98 -25.68 16
17 C -0.61 -30.56 9.05 25.60 0.23 -30.33 16
18 H 0.04 2.14 8.04 -2.91 -0.02 2.11 16
19 C -0.01 -0.57 5.47 84.65 0.46 -0.11 16
20 N -0.93 -52.51 13.70 21.45 0.29 -52.22 16
21 Si 1.07 40.85 24.78 68.60 1.70 42.55 16
22 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16
23 H -0.23 -6.82 4.72 99.48 0.47 -6.35 16
24 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16
25 C 0.07 2.40 6.69 86.43 0.58 2.98 16
26 S 0.20 5.62 20.41 -56.49 -1.15 4.46 16
27 H 0.09 1.06 8.12 -2.39 -0.02 1.04 16
28 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16
29 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16
30 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16
31 H 0.08 1.41 7.22 -2.39 -0.02 1.39 16
32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16
33 H 0.04 0.92 6.74 -2.39 -0.02 0.90 16
34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
39 H 0.42 10.24 7.23 -92.71 -0.67 9.57 16
40 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16
41 H 0.10 3.71 8.09 -2.39 -0.02 3.69 16
42 H 0.36 13.46 4.32 -74.06 -0.32 13.14 16
43 H 0.26 14.93 8.71 -92.71 -0.81 14.13 16
44 H 0.10 3.42 8.09 -2.39 -0.02 3.40 16
45 H 0.10 2.81 6.56 -2.39 -0.02 2.80 16
Total: -1.00 -65.83 374.49 -0.82 -66.64
By element:
Atomic # 1 Polarization: 39.25 SS G_CDS: -0.24 Total: 39.01 kcal
Atomic # 6 Polarization: 3.00 SS G_CDS: 7.17 Total: 10.17 kcal
Atomic # 7 Polarization: -106.12 SS G_CDS: -6.26 Total: -112.38 kcal
Atomic # 8 Polarization: -48.43 SS G_CDS: -2.03 Total: -50.46 kcal
Atomic # 14 Polarization: 40.85 SS G_CDS: 1.70 Total: 42.55 kcal
Atomic # 16 Polarization: 5.62 SS G_CDS: -1.15 Total: 4.46 kcal
Total: -65.83 -0.82 -66.64 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001649893913.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.236 kcal
(2) G-P(sol) polarization free energy of solvation -65.827 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.591 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.817 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.408 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds