Wall clock time and date at job start Tue Mar 31 2020 23:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34044 * 126.77525 * 2 1 4 4 N 1.20915 * 111.56675 * 180.28421 * 3 2 1 5 5 C 1.30183 * 111.60318 * 359.76382 * 4 3 2 6 6 C 1.35449 * 126.77787 * 179.88531 * 2 1 3 7 7 C 1.50697 * 128.00647 * 0.02562 * 6 2 1 8 8 N 1.46905 * 109.47066 * 79.70355 * 7 6 2 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09000 * 112.84789 * 336.19331 * 9 8 7 11 11 C 1.53774 * 113.61448 * 107.50193 * 9 8 7 12 12 C 1.53783 * 87.08151 * 139.97977 * 11 9 8 13 13 H 1.09007 * 113.68994 * 89.12588 * 12 11 9 14 14 C 1.52997 * 113.61522 * 220.01814 * 12 11 9 15 15 N 1.46498 * 109.47425 * 272.49720 * 14 12 11 16 16 C 1.34774 * 120.00548 * 180.02562 * 15 14 12 17 17 O 1.21280 * 119.99493 * 359.97438 * 16 15 14 18 18 C 1.50692 * 120.00397 * 179.97438 * 16 15 14 19 19 S 1.81004 * 109.47395 * 179.97438 * 18 16 15 20 20 C 1.76195 * 100.00221 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00208 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99564 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00020 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47387 * 60.00289 * 24 22 20 26 26 H 1.48506 * 109.46949 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47122 * 299.99512 * 24 22 20 28 28 C 1.53783 * 87.08073 * 334.56632 * 12 11 9 29 29 H 1.09005 * 109.47533 * 270.11237 * 1 2 3 30 30 H 1.09005 * 109.47277 * 30.11510 * 1 2 3 31 31 H 1.09006 * 109.46978 * 150.11519 * 1 2 3 32 32 H 1.08004 * 126.79792 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47558 * 319.70518 * 7 6 2 34 34 H 1.08998 * 109.47216 * 199.70180 * 7 6 2 35 35 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 36 36 H 1.09002 * 113.61535 * 254.52481 * 11 9 8 37 37 H 1.09003 * 113.61739 * 25.43128 * 11 9 8 38 38 H 1.08999 * 109.47403 * 32.49815 * 14 12 11 39 39 H 1.08995 * 109.47004 * 152.49616 * 14 12 11 40 40 H 0.97006 * 119.99773 * 359.97438 * 15 14 12 41 41 H 1.09007 * 109.47121 * 299.99996 * 18 16 15 42 42 H 1.09002 * 109.47486 * 59.99889 * 18 16 15 43 43 H 0.97005 * 119.99651 * 180.02562 * 23 22 20 44 44 H 1.08992 * 113.61655 * 270.88545 * 28 12 11 45 45 H 1.08995 * 113.61334 * 139.97626 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4763 0.7565 -0.0056 5 6 3.6213 -0.5372 -0.0050 6 6 2.3179 -1.0849 0.0022 7 6 1.9224 -2.5390 0.0046 8 7 1.5555 -2.9489 -1.3576 9 6 1.1628 -4.3640 -1.3937 10 1 1.5861 -4.9418 -0.5721 11 6 -0.3475 -4.5794 -1.5868 12 6 0.0179 -5.7431 -2.5234 13 1 0.1270 -6.6994 -2.0117 14 6 -0.8705 -5.8320 -3.7658 15 7 -2.0571 -6.6354 -3.4613 16 6 -2.9873 -6.8511 -4.4124 17 8 -2.8422 -6.3796 -5.5204 18 6 -4.2076 -7.6780 -4.0993 19 16 -5.2587 -7.7831 -5.5691 20 6 -6.5701 -8.7758 -4.9371 21 1 -6.5434 -9.1174 -3.9129 22 6 -7.6379 -9.1178 -5.7552 23 7 -7.6706 -8.7009 -7.0033 24 14 -9.0285 -10.1696 -5.0850 25 1 -9.6645 -9.4759 -3.9363 26 1 -10.0393 -10.3910 -6.1501 27 1 -8.4876 -11.4775 -4.6357 28 6 1.3529 -5.0210 -2.7711 29 1 -0.3634 0.0020 1.0277 30 1 -0.3634 0.8890 -0.5156 31 1 -0.3633 -0.8911 -0.5121 32 1 4.5528 -1.0838 -0.0096 33 1 1.0705 -2.6828 0.6691 34 1 2.7605 -3.1430 0.3523 35 1 2.3071 -2.7653 -2.0053 36 1 -0.8631 -4.8945 -0.6796 37 1 -0.8455 -3.7519 -2.0923 38 1 -1.1774 -4.8300 -4.0656 39 1 -0.3138 -6.2996 -4.5778 40 1 -2.1729 -7.0128 -2.5752 41 1 -3.9004 -8.6799 -3.7994 42 1 -4.7647 -7.2105 -3.2873 43 1 -8.4170 -8.9396 -7.5750 44 1 1.3198 -4.3144 -3.6002 45 1 2.2100 -5.6926 -2.8199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656118319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:27 Heat of formation + Delta-G solvation = 38.073358 kcal Electronic energy + Delta-G solvation = -25260.098334 eV Core-core repulsion = 21407.592404 eV Total energy + Delta-G solvation = -3852.505930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.32411 -39.99562 -38.79057 -36.37064 -34.37579 -33.53628 -32.98833 -32.42101 -29.89048 -28.52035 -27.20463 -26.21078 -25.66760 -25.35640 -22.97410 -21.89081 -21.17468 -20.51162 -19.62496 -18.01519 -17.82185 -17.46919 -16.62536 -16.24724 -16.11870 -15.49652 -15.28627 -15.21177 -14.86607 -14.79744 -14.16364 -13.93246 -13.88005 -13.59803 -13.39079 -13.19562 -12.92969 -12.74376 -12.66480 -12.56297 -12.40519 -11.99572 -11.74442 -11.48574 -11.18070 -11.04143 -11.03470 -10.96617 -10.77697 -10.73457 -10.55372 -9.81410 -9.59238 -9.36033 -9.05656 -8.95137 -8.82499 -8.22692 -6.48995 -6.20771 -3.91325 1.05462 1.78434 2.69507 3.05636 3.13417 3.23778 3.28028 3.31913 3.69930 3.77526 3.86316 4.12565 4.18175 4.21330 4.29003 4.42214 4.46327 4.55240 4.65321 4.87771 4.97886 5.02251 5.05162 5.10757 5.14227 5.15147 5.21656 5.35237 5.39410 5.46643 5.49248 5.57282 5.62555 5.66879 5.67751 5.86675 5.88496 5.93198 6.07347 6.15263 6.57906 6.67585 6.83503 7.59841 7.74835 7.84450 8.35660 8.65107 9.24317 10.86589 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023870 B = 0.001515 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.727175 B =18472.873828 C =18944.501970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.003 4.003 3 O 0.093 5.907 4 N -0.368 5.368 5 C -0.003 4.003 6 C -0.211 4.211 7 C 0.138 3.862 8 N -0.673 5.673 9 C 0.058 3.942 10 H 0.074 0.926 11 C -0.119 4.119 12 C -0.122 4.122 13 H 0.095 0.905 14 C 0.134 3.866 15 N -0.738 5.738 16 C 0.530 3.470 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.132 4.132 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.187 0.813 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.344 0.656 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.093 0.907 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.938 12.499 18.347 31.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 O 0.029 5.971 4 N -0.072 5.072 5 C -0.183 4.183 6 C -0.216 4.216 7 C 0.009 3.991 8 N -0.305 5.305 9 C -0.052 4.052 10 H 0.092 0.908 11 C -0.157 4.157 12 C -0.142 4.142 13 H 0.113 0.887 14 C 0.010 3.990 15 N -0.392 5.392 16 C 0.316 3.684 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 C -0.171 4.171 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.204 0.796 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.163 0.837 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.301 14.579 16.356 31.264 hybrid contribution -0.348 -2.652 2.274 3.511 sum 21.953 11.927 18.630 31.165 Atomic orbital electron populations 1.20435 0.83631 1.05460 1.04004 1.24415 0.96386 0.85523 1.00392 1.84819 1.11459 1.33344 1.67507 1.73903 0.97264 1.16777 1.19276 1.24930 0.99673 0.90448 1.03215 1.20977 0.91955 0.97226 1.11410 1.20129 0.99659 0.87799 0.91503 1.60641 1.44444 1.18692 1.06691 1.23041 0.97496 0.87310 0.97346 0.90767 1.23173 0.95392 0.97827 0.99342 1.22627 0.95977 0.98723 0.96850 0.88651 1.21236 0.85542 0.96052 0.96201 1.45989 1.22587 1.55474 1.15156 1.20301 0.83490 0.80218 0.84355 1.90702 1.77071 1.49534 1.22036 1.23530 0.97932 1.01507 1.07438 1.85399 1.19545 1.68504 1.09943 1.22833 1.07661 1.37465 1.00527 0.90992 1.24987 0.97876 0.96051 0.94636 1.70011 1.31353 1.43239 1.05674 0.86228 0.80561 0.80185 0.78540 1.19952 1.20810 1.19958 1.23196 0.97148 0.99388 0.97329 0.89538 0.89805 0.87898 0.79590 0.89587 0.93813 0.83662 0.91601 0.88816 0.91411 0.91739 0.76919 0.89303 0.89265 0.92137 0.88859 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.30 36.00 0.37 0.03 16 2 C 0.00 -0.02 7.49 -35.30 -0.26 -0.28 16 3 O 0.09 0.85 11.20 17.17 0.19 1.04 16 4 N -0.37 -3.59 12.07 30.36 0.37 -3.23 16 5 C 0.00 -0.03 12.16 -17.06 -0.21 -0.23 16 6 C -0.21 -1.39 5.84 -104.43 -0.61 -2.00 16 7 C 0.14 0.69 5.86 -4.97 -0.03 0.66 16 8 N -0.67 -3.68 6.55 -107.13 -0.70 -4.38 16 9 C 0.06 0.31 4.14 -66.90 -0.28 0.03 16 10 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 11 C -0.12 -0.78 7.43 -25.92 -0.19 -0.97 16 12 C -0.12 -0.86 3.75 -89.81 -0.34 -1.19 16 13 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 14 C 0.13 1.46 5.51 -4.04 -0.02 1.43 16 15 N -0.74 -9.42 5.56 -60.30 -0.33 -9.75 16 16 C 0.53 9.79 7.85 -10.99 -0.09 9.71 16 17 O -0.52 -11.82 15.86 5.56 0.09 -11.73 16 18 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 24 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 28 C -0.13 -0.78 7.21 -25.92 -0.19 -0.96 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.47 8.05 -51.93 -0.42 0.05 16 32 H 0.19 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.04 0.19 8.13 -51.93 -0.42 -0.24 16 35 H 0.34 1.86 8.54 -39.29 -0.34 1.52 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.75 7.90 -51.93 -0.41 0.34 16 38 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.40 3.88 8.47 -40.82 -0.35 3.53 16 41 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 42 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 396.95 15.07 5.98 5.98 Total: -1.00 -35.46 396.95 -9.27 -44.73 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.94 Total: -0.12 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.42 Total: -9.57 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.06 Total: -42.75 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.28 Total: -10.69 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.46 -9.27 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656118319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.804 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds