Wall clock time and date at job start Tue Mar 31 2020 23:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34044 * 126.77525 * 2 1 4 4 N 1.20915 * 111.56675 * 180.28421 * 3 2 1 5 5 C 1.30183 * 111.60318 * 359.76382 * 4 3 2 6 6 C 1.35449 * 126.77787 * 179.88531 * 2 1 3 7 7 C 1.50697 * 128.00647 * 0.02562 * 6 2 1 8 8 N 1.46905 * 109.47066 * 79.70355 * 7 6 2 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09000 * 112.84789 * 336.19331 * 9 8 7 11 11 C 1.53774 * 113.61448 * 107.50193 * 9 8 7 12 12 C 1.53783 * 87.08151 * 139.97977 * 11 9 8 13 13 H 1.09007 * 113.68994 * 89.12588 * 12 11 9 14 14 C 1.52997 * 113.61522 * 220.01814 * 12 11 9 15 15 N 1.46498 * 109.47425 * 272.49720 * 14 12 11 16 16 C 1.34774 * 120.00548 * 180.02562 * 15 14 12 17 17 O 1.21280 * 119.99493 * 359.97438 * 16 15 14 18 18 C 1.50692 * 120.00397 * 179.97438 * 16 15 14 19 19 S 1.81004 * 109.47395 * 179.97438 * 18 16 15 20 20 C 1.76195 * 100.00221 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00208 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99564 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00020 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47387 * 60.00289 * 24 22 20 26 26 H 1.48506 * 109.46949 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47122 * 299.99512 * 24 22 20 28 28 C 1.53783 * 87.08073 * 334.56632 * 12 11 9 29 29 H 1.09005 * 109.47533 * 270.11237 * 1 2 3 30 30 H 1.09005 * 109.47277 * 30.11510 * 1 2 3 31 31 H 1.09006 * 109.46978 * 150.11519 * 1 2 3 32 32 H 1.08004 * 126.79792 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47558 * 319.70518 * 7 6 2 34 34 H 1.08998 * 109.47216 * 199.70180 * 7 6 2 35 35 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 36 36 H 1.09002 * 113.61535 * 254.52481 * 11 9 8 37 37 H 1.09003 * 113.61739 * 25.43128 * 11 9 8 38 38 H 1.08999 * 109.47403 * 32.49815 * 14 12 11 39 39 H 1.08995 * 109.47004 * 152.49616 * 14 12 11 40 40 H 0.97006 * 119.99773 * 359.97438 * 15 14 12 41 41 H 1.09007 * 109.47121 * 299.99996 * 18 16 15 42 42 H 1.09002 * 109.47486 * 59.99889 * 18 16 15 43 43 H 0.97005 * 119.99651 * 180.02562 * 23 22 20 44 44 H 1.08992 * 113.61655 * 270.88545 * 28 12 11 45 45 H 1.08995 * 113.61334 * 139.97626 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4763 0.7565 -0.0056 5 6 3.6213 -0.5372 -0.0050 6 6 2.3179 -1.0849 0.0022 7 6 1.9224 -2.5390 0.0046 8 7 1.5555 -2.9489 -1.3576 9 6 1.1628 -4.3640 -1.3937 10 1 1.5861 -4.9418 -0.5721 11 6 -0.3475 -4.5794 -1.5868 12 6 0.0179 -5.7431 -2.5234 13 1 0.1270 -6.6994 -2.0117 14 6 -0.8705 -5.8320 -3.7658 15 7 -2.0571 -6.6354 -3.4613 16 6 -2.9873 -6.8511 -4.4124 17 8 -2.8422 -6.3796 -5.5204 18 6 -4.2076 -7.6780 -4.0993 19 16 -5.2587 -7.7831 -5.5691 20 6 -6.5701 -8.7758 -4.9371 21 1 -6.5434 -9.1174 -3.9129 22 6 -7.6379 -9.1178 -5.7552 23 7 -7.6706 -8.7009 -7.0033 24 14 -9.0285 -10.1696 -5.0850 25 1 -9.6645 -9.4759 -3.9363 26 1 -10.0393 -10.3910 -6.1501 27 1 -8.4876 -11.4775 -4.6357 28 6 1.3529 -5.0210 -2.7711 29 1 -0.3634 0.0020 1.0277 30 1 -0.3634 0.8890 -0.5156 31 1 -0.3633 -0.8911 -0.5121 32 1 4.5528 -1.0838 -0.0096 33 1 1.0705 -2.6828 0.6691 34 1 2.7605 -3.1430 0.3523 35 1 2.3071 -2.7653 -2.0053 36 1 -0.8631 -4.8945 -0.6796 37 1 -0.8455 -3.7519 -2.0923 38 1 -1.1774 -4.8300 -4.0656 39 1 -0.3138 -6.2996 -4.5778 40 1 -2.1729 -7.0128 -2.5752 41 1 -3.9004 -8.6799 -3.7994 42 1 -4.7647 -7.2105 -3.2873 43 1 -8.4170 -8.9396 -7.5750 44 1 1.3198 -4.3144 -3.6002 45 1 2.2100 -5.6926 -2.8199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656118319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:26 Heat of formation + Delta-G solvation = 12.716960 kcal Electronic energy + Delta-G solvation = -25261.197870 eV Core-core repulsion = 21407.592404 eV Total energy + Delta-G solvation = -3853.605466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.89111 -40.85160 -39.90612 -36.92573 -35.44708 -34.56626 -34.09692 -33.60129 -31.27917 -29.08888 -28.08416 -27.56251 -26.72448 -26.16025 -23.50252 -22.53782 -21.81629 -21.67626 -20.33078 -19.72863 -18.60381 -17.99802 -17.75244 -17.46789 -16.86132 -16.72942 -16.45445 -16.36333 -15.73339 -15.71147 -15.46585 -14.89236 -14.65780 -14.54078 -14.36146 -13.98148 -13.92433 -13.64087 -13.37018 -13.25043 -13.15116 -13.11422 -12.87479 -12.83436 -12.62681 -12.43820 -12.04460 -11.77514 -11.72380 -11.53345 -11.33442 -11.11350 -11.10170 -10.85808 -10.25567 -10.09967 -10.04438 -9.33298 -8.65005 -8.32691 -6.10984 0.52004 1.26531 1.29273 1.45512 1.49059 1.58835 1.65508 2.21091 2.28678 2.35556 3.01356 3.30526 3.34408 3.39886 3.62146 3.71836 3.74809 3.87929 3.95873 4.04158 4.10028 4.21418 4.32925 4.35698 4.50273 4.53613 4.53769 4.67691 4.71889 4.75421 4.78496 4.90779 4.92993 4.98067 5.02429 5.07959 5.19342 5.29063 5.33290 5.43231 5.44938 5.58282 6.18866 6.21329 6.43130 6.57027 7.08387 7.28952 7.30171 8.76264 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023870 B = 0.001515 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.727175 B =18472.873828 C =18944.501970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 O 0.071 5.929 4 N -0.404 5.404 5 C -0.002 4.002 6 C -0.214 4.214 7 C 0.144 3.856 8 N -0.681 5.681 9 C 0.070 3.930 10 H 0.090 0.910 11 C -0.119 4.119 12 C -0.114 4.114 13 H 0.114 0.886 14 C 0.133 3.867 15 N -0.709 5.709 16 C 0.531 3.469 17 O -0.570 6.570 18 C -0.129 4.129 19 S -0.155 6.155 20 C -0.548 4.548 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.262 1.262 28 C -0.129 4.129 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.210 0.790 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.345 0.655 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.417 0.583 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.083 0.917 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.370 11.083 21.273 32.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 O 0.011 5.989 4 N -0.112 5.112 5 C -0.181 4.181 6 C -0.218 4.218 7 C 0.015 3.985 8 N -0.312 5.312 9 C -0.040 4.040 10 H 0.108 0.892 11 C -0.158 4.158 12 C -0.133 4.133 13 H 0.132 0.868 14 C 0.010 3.990 15 N -0.363 5.363 16 C 0.316 3.684 17 O -0.449 6.449 18 C -0.280 4.280 19 S 0.072 5.928 20 C -0.695 4.695 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.186 1.186 28 C -0.168 4.168 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.227 0.773 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.164 0.836 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 22.751 13.170 19.347 32.640 hybrid contribution -0.369 -2.165 1.409 2.610 sum 22.382 11.005 20.756 32.448 Atomic orbital electron populations 1.20524 0.82012 1.05647 1.05062 1.24952 0.97386 0.85323 0.99729 1.84778 1.11611 1.34301 1.68254 1.73892 0.97790 1.18191 1.21288 1.25411 1.01010 0.89970 1.01683 1.21210 0.91500 0.97985 1.11108 1.20145 1.00350 0.86764 0.91258 1.60591 1.44723 1.18880 1.07048 1.22946 0.96422 0.87331 0.97291 0.89180 1.23140 0.96397 0.96923 0.99293 1.22614 0.95676 0.99958 0.95074 0.86816 1.21377 0.84942 0.94577 0.98149 1.45746 1.21577 1.54163 1.14796 1.20095 0.83930 0.79851 0.84482 1.90690 1.78168 1.51742 1.24323 1.23374 0.97376 1.03410 1.03859 1.85600 1.22083 1.69080 1.15999 1.23185 1.07872 1.37396 1.01073 0.89818 1.26134 1.00874 0.97351 0.94787 1.70185 1.32423 1.44839 1.07350 0.85001 0.76590 0.78373 0.78007 1.18621 1.20478 1.18626 1.23169 0.96784 0.99264 0.97536 0.87958 0.89399 0.87834 0.77349 0.89054 0.92481 0.83577 0.90588 0.90544 0.92873 0.92898 0.74631 0.87172 0.87162 0.92025 0.89880 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.30 71.24 0.73 0.16 16 2 C -0.01 -0.13 7.49 25.04 0.19 0.06 16 3 O 0.07 1.32 11.20 71.60 0.80 2.12 16 4 N -0.40 -7.91 12.07 -59.26 -0.72 -8.62 16 5 C 0.00 -0.03 12.16 85.71 1.04 1.02 16 6 C -0.21 -2.51 5.84 -19.74 -0.12 -2.62 16 7 C 0.14 1.08 5.86 85.55 0.50 1.58 16 8 N -0.68 -5.92 6.55 -492.85 -3.23 -9.15 16 9 C 0.07 0.53 4.14 45.44 0.19 0.72 16 10 H 0.09 0.48 7.87 -2.39 -0.02 0.46 16 11 C -0.12 -1.24 7.43 31.12 0.23 -1.01 16 12 C -0.11 -1.30 3.75 -10.27 -0.04 -1.33 16 13 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 14 C 0.13 2.74 5.51 86.38 0.48 3.22 16 15 N -0.71 -16.79 5.56 -463.09 -2.57 -19.36 16 16 C 0.53 19.30 7.85 87.65 0.69 19.98 16 17 O -0.57 -26.61 15.86 -3.03 -0.05 -26.66 16 18 C -0.13 -5.02 6.16 71.23 0.44 -4.58 16 19 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 20 C -0.55 -31.11 9.50 67.95 0.65 -30.46 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.75 5.49 84.86 0.47 1.22 16 23 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 24 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 25 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 28 C -0.13 -1.21 7.21 31.12 0.22 -0.99 16 29 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.10 0.80 8.05 -2.38 -0.02 0.78 16 32 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.30 8.13 -2.39 -0.02 0.28 16 35 H 0.35 3.07 8.54 -89.69 -0.77 2.30 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 1.11 7.90 -2.39 -0.02 1.09 16 38 H 0.05 1.28 7.84 -2.39 -0.02 1.26 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.42 6.76 8.47 -92.70 -0.79 5.98 16 41 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 42 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 43 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 44 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 45 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -80.21 396.95 0.52 -79.69 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -0.54 Total: 15.23 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 5.67 Total: -13.04 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -6.23 Total: -92.82 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: 0.75 Total: -24.54 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -80.21 0.52 -79.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656118319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.406 kcal (2) G-P(sol) polarization free energy of solvation -80.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds