Wall clock time and date at job start Tue Mar 31 2020 23:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47317 * 2 1 4 4 N 1.29029 * 124.91482 * 90.27464 * 3 2 1 5 5 C 1.31784 * 117.12328 * 180.22761 * 4 3 2 6 6 C 1.50694 * 122.75149 * 179.75330 * 5 4 3 7 7 C 1.50695 * 109.47294 * 304.71330 * 6 5 4 8 8 O 1.21288 * 119.99973 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00106 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00015 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47358 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.51083 * 304.89973 * 11 10 9 13 13 C 1.52878 * 109.58774 * 184.88039 * 11 10 9 14 14 N 1.47148 * 108.61115 * 187.91936 * 13 11 10 15 15 C 1.36936 * 120.98122 * 230.50344 * 14 13 11 16 16 H 1.08003 * 119.99701 * 153.48485 * 15 14 13 17 17 C 1.38807 * 120.00003 * 333.74707 * 15 14 13 18 18 N 1.31626 * 120.00344 * 342.94847 * 17 15 14 19 19 Si 1.86798 * 120.00138 * 162.94911 * 17 15 14 20 20 H 1.48502 * 109.47351 * 89.99936 * 19 17 15 21 21 H 1.48497 * 109.47475 * 210.00414 * 19 17 15 22 22 H 1.48505 * 109.46888 * 330.00210 * 19 17 15 23 23 C 1.47154 * 118.03368 * 50.22868 * 14 13 11 24 24 C 1.53295 * 108.38342 * 309.71535 * 23 14 13 25 25 O 1.42960 * 109.22447 * 52.30093 * 24 23 14 26 26 C 1.33640 * 114.49887 * 359.48559 * 5 4 3 27 27 S 1.70980 * 124.91501 * 269.97532 * 3 2 1 28 28 H 1.09006 * 109.46566 * 59.99969 * 1 2 3 29 29 H 1.08993 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47028 * 300.00498 * 1 2 3 31 31 H 1.08997 * 109.47332 * 239.99621 * 2 1 3 32 32 H 1.09000 * 109.46842 * 119.99361 * 2 1 3 33 33 H 1.09004 * 109.47303 * 184.70999 * 6 5 4 34 34 H 1.08996 * 109.47074 * 64.71477 * 6 5 4 35 35 H 0.96995 * 120.00028 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.47220 * 59.99452 * 10 9 7 37 37 H 1.09002 * 109.46893 * 299.99802 * 10 9 7 38 38 H 1.09008 * 109.61508 * 68.09536 * 13 11 10 39 39 H 1.08996 * 109.52032 * 307.69031 * 13 11 10 40 40 H 0.96991 * 120.00283 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.68372 * 69.43646 * 23 14 13 42 42 H 1.08998 * 109.67817 * 189.95377 * 23 14 13 43 43 H 1.08998 * 109.51274 * 172.23235 * 24 23 14 44 44 H 1.09005 * 109.51186 * 292.37517 * 24 23 14 45 45 H 1.08001 * 126.04153 * 180.26507 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2834 2.1154 1.0580 5 6 2.7134 3.3482 0.8794 6 6 3.0394 4.2719 2.0246 7 6 1.8442 4.3840 2.9355 8 8 0.8275 3.7742 2.6797 9 7 1.9051 5.1618 4.0345 10 6 0.7433 5.2703 4.9203 11 6 1.0742 6.2082 6.0830 12 1 1.9733 5.8571 6.5893 13 6 -0.0909 6.2287 7.0725 14 7 0.1640 7.2738 8.0765 15 6 0.0728 7.0021 9.4156 16 1 0.6436 7.5834 10.1246 17 6 -0.7492 5.9761 9.8611 18 7 -1.6820 5.4895 9.0702 19 14 -0.5315 5.2860 11.5833 20 1 -1.3837 6.0461 12.5326 21 1 -0.9294 3.8554 11.5972 22 1 0.8918 5.4079 11.9891 23 6 0.5259 8.6179 7.5992 24 6 1.6663 8.4796 6.5841 25 8 1.2929 7.5296 5.5832 26 6 2.8421 3.7102 -0.4006 27 16 2.3592 2.3433 -1.4020 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.2933 5.2579 1.6352 34 1 3.8860 3.8730 2.5834 35 1 2.7183 5.6492 4.2393 36 1 0.4896 4.2842 5.3093 37 1 -0.1035 5.6694 4.3618 38 1 -0.1708 5.2590 7.5640 39 1 -1.0166 6.4485 6.5407 40 1 -2.2561 4.7723 9.3815 41 1 -0.3366 9.0823 7.1213 42 1 0.8538 9.2299 8.4394 43 1 1.8565 9.4456 6.1164 44 1 2.5673 8.1372 7.0931 45 1 3.1820 4.6710 -0.7581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666734924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:19 Heat of formation + Delta-G solvation = -18.484170 kcal Electronic energy + Delta-G solvation = -26746.368173 eV Core-core repulsion = 22891.409725 eV Total energy + Delta-G solvation = -3854.958448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.38864 -39.15010 -38.31037 -34.78953 -34.47064 -34.25853 -31.75811 -31.28319 -30.64983 -28.46554 -27.23784 -25.68833 -25.14696 -23.30681 -22.35260 -21.60386 -20.53140 -19.85694 -19.55614 -17.95290 -17.02052 -16.82511 -16.02224 -15.91495 -15.43881 -15.18284 -14.92412 -14.78982 -14.47885 -14.33229 -13.96166 -13.84382 -13.58019 -13.27278 -13.15157 -12.93221 -12.87500 -12.63363 -12.36284 -11.95959 -11.84005 -11.62226 -11.45760 -11.33545 -11.11305 -10.85010 -10.72812 -10.42367 -10.29888 -10.03226 -9.77386 -9.68134 -9.64366 -9.49446 -9.09538 -8.86921 -8.78323 -8.55890 -6.77075 -5.85824 -3.29537 0.55664 1.20314 1.55498 2.61633 2.85465 3.33203 3.40724 3.42525 3.46012 3.83158 4.25656 4.42916 4.53619 4.81524 4.86889 4.97853 4.99023 5.07478 5.18810 5.20881 5.33350 5.35009 5.49863 5.55408 5.57839 5.64538 5.74163 5.85183 5.91813 5.93980 6.04031 6.05433 6.12655 6.25059 6.37538 6.50191 6.70988 6.77012 7.05502 7.46808 7.66584 7.69227 7.72675 7.83452 8.31578 8.44652 9.09212 9.72467 10.29359 11.22369 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.002255 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.287831 B =12416.545287 C =13641.352881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.058 3.942 4 N -0.444 5.444 5 C 0.093 3.907 6 C -0.068 4.068 7 C 0.513 3.487 8 O -0.526 6.526 9 N -0.723 5.723 10 C 0.135 3.865 11 C 0.056 3.944 12 H 0.055 0.945 13 C 0.152 3.848 14 N -0.594 5.594 15 C -0.257 4.257 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.904 3.096 20 H -0.286 1.286 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.050 3.950 25 O -0.390 6.390 26 C -0.260 4.260 27 S 0.102 5.898 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.400 0.600 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.031 0.969 40 H 0.256 0.744 41 H 0.026 0.974 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.779 -5.443 -20.582 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.222 4.222 4 N -0.157 5.157 5 C -0.039 4.039 6 C -0.111 4.111 7 C 0.298 3.702 8 O -0.401 6.401 9 N -0.375 5.375 10 C 0.011 3.989 11 C -0.003 4.003 12 H 0.073 0.927 13 C 0.026 3.974 14 N -0.318 5.318 15 C -0.386 4.386 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.734 3.266 20 H -0.213 1.213 21 H -0.214 1.214 22 H -0.205 1.205 23 C -0.018 4.018 24 C -0.028 4.028 25 O -0.310 6.310 26 C -0.398 4.398 27 S 0.357 5.643 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.234 0.766 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 10.728 -6.402 -21.463 24.834 hybrid contribution 0.629 0.615 2.011 2.194 sum 11.357 -5.788 -19.452 23.256 Atomic orbital electron populations 1.21773 0.93305 1.02469 1.03100 1.20219 0.96970 0.87484 1.04018 1.27081 1.02866 1.01738 0.90476 1.65989 1.12936 1.05616 1.31148 1.19570 1.00048 0.91272 0.93046 1.20244 0.98297 0.98990 0.93539 1.20204 0.89277 0.79276 0.81463 1.90738 1.32148 1.44466 1.72749 1.45955 1.17549 1.48546 1.25445 1.21364 0.88249 0.99145 0.90146 1.23054 1.00775 0.82374 0.94127 0.92669 1.21215 0.91961 0.95686 0.88587 1.44033 1.81582 1.03655 1.02563 1.19160 1.20543 1.16546 0.82388 0.91395 1.25060 0.95468 1.01159 0.97919 1.70019 1.19121 1.28874 1.36470 0.86276 0.77879 0.78399 0.84087 1.21281 1.21402 1.20463 1.21600 0.95228 0.89087 0.95836 1.23002 0.97406 0.91687 0.90708 1.87784 1.90057 1.18902 1.34218 1.26728 1.13090 1.04375 0.95651 1.83839 1.60956 1.06126 1.13395 0.92526 0.91459 0.91391 0.89863 0.88753 0.87294 0.87235 0.76581 0.90016 0.90898 0.88616 0.95134 0.93382 0.95569 0.91985 0.90042 0.93882 0.80595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.92 16 2 C -0.05 -0.40 6.52 -27.88 -0.18 -0.58 16 3 C 0.06 0.66 6.64 -13.45 -0.09 0.57 16 4 N -0.44 -6.25 9.70 -8.06 -0.08 -6.33 16 5 C 0.09 1.16 5.63 -84.23 -0.47 0.68 16 6 C -0.07 -0.72 6.19 -29.04 -0.18 -0.90 16 7 C 0.51 7.66 7.80 -10.99 -0.09 7.58 16 8 O -0.53 -10.18 15.46 5.55 0.09 -10.10 16 9 N -0.72 -10.31 5.50 -60.30 -0.33 -10.64 16 10 C 0.13 2.34 5.34 -4.04 -0.02 2.32 16 11 C 0.06 1.06 2.80 -26.80 -0.07 0.99 16 12 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 13 C 0.15 3.61 4.71 -3.75 -0.02 3.59 16 14 N -0.59 -14.85 3.05 -172.09 -0.53 -15.37 16 15 C -0.26 -6.97 9.65 -15.06 -0.15 -7.12 16 16 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 17 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 18 N -0.90 -25.98 11.15 55.49 0.62 -25.36 16 19 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.11 2.26 6.74 -3.53 -0.02 2.23 16 24 C 0.05 0.86 6.98 37.31 0.26 1.12 16 25 O -0.39 -7.20 10.33 -35.23 -0.36 -7.57 16 26 C -0.26 -2.60 11.07 29.12 0.32 -2.28 16 27 S 0.10 0.94 23.18 -107.50 -2.49 -1.55 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.11 0.81 8.03 -51.93 -0.42 0.40 16 34 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.40 4.69 8.47 -40.82 -0.35 4.35 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.10 2.50 6.15 -51.92 -0.32 2.18 16 39 H 0.03 0.79 8.13 -51.93 -0.42 0.36 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.18 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -34.33 384.88 -9.71 -44.03 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.96 Total: 3.41 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.43 Total: 7.28 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.32 Total: -57.70 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.28 Total: -17.67 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.33 -9.71 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666734924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.549 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds