Wall clock time and date at job start Tue Mar 31 2020 23:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47317 * 2 1 4 4 N 1.29029 * 124.91482 * 90.27464 * 3 2 1 5 5 C 1.31784 * 117.12328 * 180.22761 * 4 3 2 6 6 C 1.50694 * 122.75149 * 179.75330 * 5 4 3 7 7 C 1.50695 * 109.47294 * 304.71330 * 6 5 4 8 8 O 1.21288 * 119.99973 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00106 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00015 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47358 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.51083 * 304.89973 * 11 10 9 13 13 C 1.52878 * 109.58774 * 184.88039 * 11 10 9 14 14 N 1.47148 * 108.61115 * 187.91936 * 13 11 10 15 15 C 1.36936 * 120.98122 * 230.50344 * 14 13 11 16 16 H 1.08003 * 119.99701 * 153.48485 * 15 14 13 17 17 C 1.38807 * 120.00003 * 333.74707 * 15 14 13 18 18 N 1.31626 * 120.00344 * 342.94847 * 17 15 14 19 19 Si 1.86798 * 120.00138 * 162.94911 * 17 15 14 20 20 H 1.48502 * 109.47351 * 89.99936 * 19 17 15 21 21 H 1.48497 * 109.47475 * 210.00414 * 19 17 15 22 22 H 1.48505 * 109.46888 * 330.00210 * 19 17 15 23 23 C 1.47154 * 118.03368 * 50.22868 * 14 13 11 24 24 C 1.53295 * 108.38342 * 309.71535 * 23 14 13 25 25 O 1.42960 * 109.22447 * 52.30093 * 24 23 14 26 26 C 1.33640 * 114.49887 * 359.48559 * 5 4 3 27 27 S 1.70980 * 124.91501 * 269.97532 * 3 2 1 28 28 H 1.09006 * 109.46566 * 59.99969 * 1 2 3 29 29 H 1.08993 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47028 * 300.00498 * 1 2 3 31 31 H 1.08997 * 109.47332 * 239.99621 * 2 1 3 32 32 H 1.09000 * 109.46842 * 119.99361 * 2 1 3 33 33 H 1.09004 * 109.47303 * 184.70999 * 6 5 4 34 34 H 1.08996 * 109.47074 * 64.71477 * 6 5 4 35 35 H 0.96995 * 120.00028 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.47220 * 59.99452 * 10 9 7 37 37 H 1.09002 * 109.46893 * 299.99802 * 10 9 7 38 38 H 1.09008 * 109.61508 * 68.09536 * 13 11 10 39 39 H 1.08996 * 109.52032 * 307.69031 * 13 11 10 40 40 H 0.96991 * 120.00283 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.68372 * 69.43646 * 23 14 13 42 42 H 1.08998 * 109.67817 * 189.95377 * 23 14 13 43 43 H 1.08998 * 109.51274 * 172.23235 * 24 23 14 44 44 H 1.09005 * 109.51186 * 292.37517 * 24 23 14 45 45 H 1.08001 * 126.04153 * 180.26507 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2834 2.1154 1.0580 5 6 2.7134 3.3482 0.8794 6 6 3.0394 4.2719 2.0246 7 6 1.8442 4.3840 2.9355 8 8 0.8275 3.7742 2.6797 9 7 1.9051 5.1618 4.0345 10 6 0.7433 5.2703 4.9203 11 6 1.0742 6.2082 6.0830 12 1 1.9733 5.8571 6.5893 13 6 -0.0909 6.2287 7.0725 14 7 0.1640 7.2738 8.0765 15 6 0.0728 7.0021 9.4156 16 1 0.6436 7.5834 10.1246 17 6 -0.7492 5.9761 9.8611 18 7 -1.6820 5.4895 9.0702 19 14 -0.5315 5.2860 11.5833 20 1 -1.3837 6.0461 12.5326 21 1 -0.9294 3.8554 11.5972 22 1 0.8918 5.4079 11.9891 23 6 0.5259 8.6179 7.5992 24 6 1.6663 8.4796 6.5841 25 8 1.2929 7.5296 5.5832 26 6 2.8421 3.7102 -0.4006 27 16 2.3592 2.3433 -1.4020 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.2933 5.2579 1.6352 34 1 3.8860 3.8730 2.5834 35 1 2.7183 5.6492 4.2393 36 1 0.4896 4.2842 5.3093 37 1 -0.1035 5.6694 4.3618 38 1 -0.1708 5.2590 7.5640 39 1 -1.0166 6.4485 6.5407 40 1 -2.2561 4.7723 9.3815 41 1 -0.3366 9.0823 7.1213 42 1 0.8538 9.2299 8.4394 43 1 1.8565 9.4456 6.1164 44 1 2.5673 8.1372 7.0931 45 1 3.1820 4.6710 -0.7581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666734924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:18 Heat of formation + Delta-G solvation = -43.182600 kcal Electronic energy + Delta-G solvation = -26747.439177 eV Core-core repulsion = 22891.409725 eV Total energy + Delta-G solvation = -3856.029453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.33740 -40.43353 -39.72263 -36.45673 -35.80696 -35.20998 -33.28690 -32.86994 -31.86160 -29.49423 -28.84490 -27.03563 -26.21817 -25.07606 -23.53023 -22.83428 -21.79893 -21.20118 -20.60139 -19.01093 -18.76738 -17.92704 -17.50897 -17.13598 -16.93259 -16.34867 -16.17259 -15.99820 -15.71124 -15.51493 -15.32872 -15.06950 -14.95196 -14.64558 -14.56989 -14.25773 -13.96078 -13.91715 -13.25192 -13.17446 -13.02931 -12.95873 -12.68542 -12.55607 -12.52085 -12.33200 -12.21451 -12.11194 -12.02756 -11.87805 -11.31963 -10.99661 -10.78367 -10.56017 -10.49155 -10.28285 -10.09961 -9.62707 -8.77318 -7.93032 -5.40568 -0.21067 0.48158 0.78695 1.44693 1.46691 1.56312 1.70052 1.75200 2.30718 2.47569 2.77983 3.11940 3.22289 3.48687 3.74057 3.96817 4.05882 4.10194 4.12936 4.21740 4.27437 4.30536 4.36535 4.45212 4.51183 4.52552 4.58293 4.65793 4.67715 4.76928 4.82618 4.93601 4.96925 5.04289 5.06024 5.18239 5.21511 5.30959 5.41415 5.50450 5.58212 6.25156 6.31388 6.60470 6.90846 7.03351 7.31893 7.72815 8.26361 9.12985 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.002255 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.287831 B =12416.545287 C =13641.352881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.033 3.967 4 N -0.489 5.489 5 C 0.059 3.941 6 C -0.058 4.058 7 C 0.510 3.490 8 O -0.577 6.577 9 N -0.711 5.711 10 C 0.147 3.853 11 C 0.079 3.921 12 H 0.066 0.934 13 C 0.159 3.841 14 N -0.615 5.615 15 C -0.266 4.266 16 H 0.075 0.925 17 C -0.053 4.053 18 N -0.937 5.937 19 Si 0.971 3.029 20 H -0.284 1.284 21 H -0.294 1.294 22 H -0.266 1.266 23 C 0.101 3.899 24 C 0.057 3.943 25 O -0.389 6.389 26 C -0.256 4.256 27 S 0.146 5.854 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.031 0.969 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.148 0.852 34 H 0.130 0.870 35 H 0.417 0.583 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.065 0.935 39 H -0.003 1.003 40 H 0.251 0.749 41 H 0.014 0.986 42 H 0.073 0.927 43 H 0.123 0.877 44 H 0.056 0.944 45 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.580 -4.514 -21.958 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.245 4.245 4 N -0.203 5.203 5 C -0.073 4.073 6 C -0.100 4.100 7 C 0.297 3.703 8 O -0.455 6.455 9 N -0.364 5.364 10 C 0.022 3.978 11 C 0.020 3.980 12 H 0.084 0.916 13 C 0.032 3.968 14 N -0.339 5.339 15 C -0.395 4.395 16 H 0.093 0.907 17 C -0.248 4.248 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.191 1.191 23 C -0.025 4.025 24 C -0.021 4.021 25 O -0.308 6.308 26 C -0.395 4.395 27 S 0.401 5.599 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.165 0.835 34 H 0.148 0.852 35 H 0.253 0.747 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.015 0.985 40 H 0.060 0.940 41 H 0.032 0.968 42 H 0.092 0.908 43 H 0.140 0.860 44 H 0.074 0.926 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 13.588 -5.430 -22.849 27.134 hybrid contribution -0.281 0.407 2.375 2.426 sum 13.307 -5.023 -20.474 24.930 Atomic orbital electron populations 1.21736 0.93657 1.03344 1.01480 1.20341 0.96580 0.86675 1.05161 1.27500 1.03018 1.02816 0.91208 1.65997 1.14339 1.06943 1.33036 1.19890 1.01630 0.91368 0.94425 1.20318 0.96226 1.00934 0.92483 1.21054 0.89984 0.77858 0.81404 1.90721 1.34535 1.46387 1.73901 1.45772 1.17023 1.48698 1.24875 1.20967 0.89082 0.97800 0.89982 1.22626 0.98736 0.83295 0.93370 0.91619 1.20988 0.92752 0.94084 0.88963 1.44342 1.81700 1.05608 1.02268 1.19548 1.19952 1.16353 0.83680 0.90697 1.25870 0.95423 1.01819 1.01684 1.70192 1.20266 1.29428 1.38351 0.85234 0.78270 0.77040 0.79652 1.21053 1.22020 1.19072 1.21846 0.96222 0.87118 0.97272 1.23092 0.95893 0.93194 0.89873 1.87798 1.89909 1.18559 1.34518 1.27163 1.11505 1.05704 0.95122 1.83604 1.59638 1.05025 1.11593 0.92080 0.89351 0.94934 0.86878 0.89414 0.83466 0.85203 0.74656 0.91574 0.92767 0.91681 0.98527 0.93994 0.96768 0.90825 0.85952 0.92606 0.77575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.89 71.98 0.71 -1.81 16 2 C -0.05 -0.79 6.52 29.85 0.19 -0.60 16 3 C 0.03 0.74 6.64 88.52 0.59 1.32 16 4 N -0.49 -13.79 9.70 -179.40 -1.74 -15.53 16 5 C 0.06 1.38 5.63 41.52 0.23 1.62 16 6 C -0.06 -1.10 6.19 29.10 0.18 -0.92 16 7 C 0.51 14.95 7.80 87.66 0.68 15.64 16 8 O -0.58 -23.06 15.46 -3.05 -0.05 -23.11 16 9 N -0.71 -19.58 5.50 -463.06 -2.55 -22.13 16 10 C 0.15 5.22 5.34 86.38 0.46 5.69 16 11 C 0.08 2.99 2.80 30.55 0.09 3.08 16 12 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 13 C 0.16 7.82 4.71 86.21 0.41 8.23 16 14 N -0.61 -30.99 3.05 -698.36 -2.13 -33.12 16 15 C -0.27 -14.48 9.65 84.03 0.81 -13.67 16 16 H 0.08 3.90 7.88 -2.91 -0.02 3.87 16 17 C -0.05 -2.94 4.94 84.86 0.42 -2.52 16 18 N -0.94 -56.15 11.15 21.65 0.24 -55.90 16 19 Si 0.97 44.66 29.59 68.60 2.03 46.69 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C 0.10 4.07 6.74 86.35 0.58 4.65 16 24 C 0.06 1.79 6.98 72.08 0.50 2.29 16 25 O -0.39 -13.59 10.33 -148.98 -1.54 -15.13 16 26 C -0.26 -4.51 11.07 66.78 0.74 -3.77 16 27 S 0.15 2.43 23.18 -56.49 -1.31 1.12 16 28 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.15 1.60 8.03 -2.38 -0.02 1.59 16 34 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.42 8.73 8.47 -92.71 -0.79 7.94 16 36 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 3.59 6.15 -2.38 -0.01 3.57 16 39 H 0.00 -0.18 8.13 -2.39 -0.02 -0.20 16 40 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 2.76 7.96 -2.39 -0.02 2.74 16 43 H 0.12 2.92 8.14 -2.39 -0.02 2.91 16 44 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.21 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -78.59 384.88 -0.23 -78.83 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.21 Total: 19.07 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 6.60 Total: 19.22 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -6.18 Total: -126.69 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -1.59 Total: -38.24 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.31 Total: 1.12 kcal Total: -78.59 -0.23 -78.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666734924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.644 kcal (2) G-P(sol) polarization free energy of solvation -78.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds