Wall clock time and date at job start Tue Mar 31 2020 23:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47539 * 2 1 4 4 N 1.29032 * 124.91444 * 90.00432 * 3 2 1 5 5 C 1.31779 * 117.12649 * 179.97438 * 4 3 2 6 6 C 1.50701 * 122.75508 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.46806 * 304.97453 * 6 5 4 8 8 O 1.21287 * 120.00457 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00241 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00555 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47176 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.51337 * 60.10241 * 11 10 9 13 13 C 1.53302 * 109.51134 * 180.25141 * 11 10 9 14 14 N 1.47147 * 108.38599 * 172.22250 * 13 11 10 15 15 C 1.36934 * 120.98148 * 129.48313 * 14 13 11 16 16 H 1.08000 * 120.00391 * 206.21044 * 15 14 13 17 17 C 1.38810 * 119.99942 * 26.21333 * 15 14 13 18 18 N 1.31620 * 119.99971 * 16.93074 * 17 15 14 19 19 Si 1.86800 * 120.00223 * 196.92450 * 17 15 14 20 20 H 1.48498 * 109.46905 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47028 * 120.00031 * 19 17 15 22 22 H 1.48503 * 109.47383 * 240.00159 * 19 17 15 23 23 C 1.47151 * 118.03774 * 309.46885 * 14 13 11 24 24 C 1.53298 * 108.38510 * 50.53040 * 23 14 13 25 25 O 1.42956 * 109.51135 * 299.99436 * 11 10 9 26 26 C 1.33648 * 114.49792 * 359.97438 * 5 4 3 27 27 S 1.70972 * 124.91921 * 269.69744 * 3 2 1 28 28 H 1.08990 * 109.47781 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46893 * 300.00083 * 1 2 3 30 30 H 1.09002 * 109.47183 * 59.98922 * 1 2 3 31 31 H 1.09000 * 109.47069 * 239.99743 * 2 1 3 32 32 H 1.09004 * 109.47355 * 120.00323 * 2 1 3 33 33 H 1.09000 * 109.46798 * 64.96958 * 6 5 4 34 34 H 1.08996 * 109.47586 * 184.97200 * 6 5 4 35 35 H 0.97007 * 119.99803 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.46873 * 299.99596 * 10 9 7 37 37 H 1.08996 * 109.47104 * 59.99589 * 10 9 7 38 38 H 1.09002 * 109.68092 * 291.95274 * 13 11 10 39 39 H 1.09000 * 109.67632 * 52.49964 * 13 11 10 40 40 H 0.97005 * 120.00294 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.68198 * 290.80908 * 23 14 13 42 42 H 1.08996 * 109.71652 * 170.27200 * 23 14 13 43 43 H 1.09004 * 109.51267 * 187.77300 * 24 23 14 44 44 H 1.08998 * 109.51068 * 67.62225 * 24 23 14 45 45 H 1.08003 * 126.03562 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2787 2.1170 1.0581 5 6 2.7145 3.3477 0.8795 6 6 3.0417 4.2710 2.0247 7 6 1.8469 4.3839 2.9361 8 8 0.8296 3.7750 2.6806 9 7 1.9087 5.1615 4.0351 10 6 0.7474 5.2709 4.9214 11 6 1.0796 6.2084 6.0840 12 1 1.3319 7.1950 5.6955 13 6 -0.1330 6.3185 7.0155 14 7 0.2701 7.0691 8.2153 15 6 -0.4670 8.1333 8.6617 16 1 0.0068 8.9152 9.2367 17 6 -1.8232 8.2072 8.3752 18 7 -2.4716 7.1324 7.9791 19 14 -2.7281 9.8318 8.5520 20 1 -1.7798 10.8794 9.0085 21 1 -3.3035 10.2232 7.2402 22 1 -3.8202 9.6843 9.5474 23 6 1.4884 6.6421 8.9215 24 6 2.6220 6.5161 7.8971 25 8 2.1900 5.6853 6.8169 26 6 2.8434 3.7097 -0.4005 27 16 2.3656 2.3409 -1.4019 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8881 3.8713 2.5832 34 1 3.2962 5.2568 1.6354 35 1 2.7225 5.6483 4.2397 36 1 -0.0992 5.6707 4.3633 37 1 0.4931 4.2849 5.3104 38 1 -0.9401 6.8455 6.5066 39 1 -0.4679 5.3214 7.3015 40 1 -3.4193 7.1841 7.7785 41 1 1.3168 5.6775 9.3995 42 1 1.7554 7.3828 9.6751 43 1 3.4950 6.0697 8.3733 44 1 2.8796 7.5043 7.5160 45 1 3.1834 4.6705 -0.7580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666734925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:22 Heat of formation + Delta-G solvation = -18.537593 kcal Electronic energy + Delta-G solvation = -26749.728120 eV Core-core repulsion = 22894.767355 eV Total energy + Delta-G solvation = -3854.960765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.38591 -39.14390 -38.29749 -34.78914 -34.47103 -34.24570 -31.75069 -31.28325 -30.63641 -28.46128 -27.24060 -25.68640 -25.14608 -23.30317 -22.35046 -21.59705 -20.50656 -19.85661 -19.56913 -17.95363 -17.02244 -16.81945 -16.09019 -15.77112 -15.48840 -15.11578 -15.08153 -14.74397 -14.44443 -14.31585 -13.96813 -13.85293 -13.56487 -13.27414 -13.15649 -12.94972 -12.86696 -12.62357 -12.36436 -11.96848 -11.84996 -11.55412 -11.49026 -11.33412 -11.11662 -10.87058 -10.72828 -10.42373 -10.26387 -10.04290 -9.77111 -9.68185 -9.63413 -9.49269 -9.08910 -8.87387 -8.76665 -8.56937 -6.77606 -5.86185 -3.30063 0.55697 1.20408 1.55607 2.62239 2.85419 3.32342 3.40305 3.42537 3.46748 3.83375 4.26040 4.42367 4.53914 4.81429 4.87004 4.98257 4.99437 5.06981 5.19349 5.21771 5.33127 5.34413 5.50701 5.55630 5.57792 5.64142 5.74244 5.85503 5.91956 5.94108 6.03483 6.05609 6.12299 6.25225 6.38861 6.50039 6.71342 6.77255 7.05711 7.47054 7.67126 7.69324 7.73787 7.83522 8.31108 8.45487 9.08900 9.71984 10.28993 11.21818 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.002170 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.749145 B =12898.300217 C =13427.851498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.057 3.943 4 N -0.443 5.443 5 C 0.093 3.907 6 C -0.068 4.068 7 C 0.513 3.487 8 O -0.526 6.526 9 N -0.722 5.722 10 C 0.135 3.865 11 C 0.056 3.944 12 H 0.055 0.945 13 C 0.152 3.848 14 N -0.595 5.595 15 C -0.256 4.256 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.109 3.891 24 C 0.050 3.950 25 O -0.390 6.390 26 C -0.260 4.260 27 S 0.102 5.898 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.401 0.599 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.031 0.969 40 H 0.255 0.745 41 H 0.026 0.974 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.567 -9.024 -18.172 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.222 4.222 4 N -0.156 5.156 5 C -0.039 4.039 6 C -0.111 4.111 7 C 0.297 3.703 8 O -0.401 6.401 9 N -0.374 5.374 10 C 0.011 3.989 11 C -0.004 4.004 12 H 0.073 0.927 13 C 0.026 3.974 14 N -0.319 5.319 15 C -0.385 4.385 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.545 5.545 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.216 1.216 23 C -0.018 4.018 24 C -0.028 4.028 25 O -0.309 6.309 26 C -0.399 4.399 27 S 0.357 5.643 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.235 0.765 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 12.569 -10.070 -18.982 24.893 hybrid contribution -0.075 2.016 1.061 2.280 sum 12.494 -8.054 -17.920 23.283 Atomic orbital electron populations 1.21771 0.93311 1.02462 1.03103 1.20217 0.96969 0.87484 1.04010 1.27082 1.02890 1.01740 0.90469 1.65988 1.12886 1.05612 1.31140 1.19577 0.99990 0.91326 0.93032 1.20244 0.98361 0.98946 0.93518 1.20206 0.89262 0.79266 0.81520 1.90737 1.32100 1.44313 1.72979 1.45931 1.17585 1.48872 1.25023 1.21376 0.87824 1.00694 0.89011 1.23144 0.90328 0.95010 0.91889 0.92673 1.21308 0.92790 0.96514 0.86806 1.44061 1.26295 1.35179 1.26326 1.19224 0.89672 0.97239 1.32397 0.91299 1.25069 0.96141 0.97171 1.01292 1.70032 1.08590 1.26216 1.49667 0.86196 0.79627 0.83326 0.77459 1.20234 1.21435 1.21591 1.21603 0.88062 0.98271 0.93834 1.23002 0.97022 0.93960 0.88793 1.87780 1.49530 1.48112 1.45494 1.26728 1.13156 1.04352 0.95650 1.83834 1.61014 1.06060 1.13413 0.91464 0.91401 0.92521 0.89867 0.88756 0.87163 0.87369 0.76509 0.90200 0.90846 0.88615 0.95077 0.93441 0.95562 0.91989 0.90027 0.93886 0.80609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.92 16 2 C -0.05 -0.39 6.52 -27.89 -0.18 -0.58 16 3 C 0.06 0.66 6.64 -13.46 -0.09 0.57 16 4 N -0.44 -6.26 9.68 -8.06 -0.08 -6.34 16 5 C 0.09 1.16 5.63 -84.22 -0.47 0.68 16 6 C -0.07 -0.72 6.19 -29.04 -0.18 -0.90 16 7 C 0.51 7.67 7.80 -10.99 -0.09 7.59 16 8 O -0.53 -10.20 15.45 5.55 0.09 -10.11 16 9 N -0.72 -10.32 5.45 -60.30 -0.33 -10.65 16 10 C 0.13 2.34 5.37 -4.04 -0.02 2.32 16 11 C 0.06 1.06 2.87 -26.57 -0.08 0.98 16 12 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 13 C 0.15 3.61 4.73 -3.53 -0.02 3.60 16 14 N -0.59 -14.84 3.05 -171.83 -0.52 -15.36 16 15 C -0.26 -6.93 9.65 -15.06 -0.15 -7.07 16 16 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 17 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 18 N -0.90 -25.95 11.14 55.49 0.62 -25.34 16 19 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.11 2.25 6.73 -3.53 -0.02 2.23 16 24 C 0.05 0.87 6.99 37.31 0.26 1.13 16 25 O -0.39 -7.20 10.13 -35.23 -0.36 -7.56 16 26 C -0.26 -2.60 11.07 29.12 0.32 -2.28 16 27 S 0.10 0.94 23.18 -107.50 -2.49 -1.55 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.11 0.79 8.03 -51.93 -0.42 0.37 16 35 H 0.40 4.75 8.35 -40.82 -0.34 4.40 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.10 2.50 6.14 -51.93 -0.32 2.18 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.18 1.24 8.06 -52.48 -0.42 0.81 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -34.32 384.59 -9.70 -44.01 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.96 Total: 3.43 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -0.43 Total: 7.31 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.31 Total: -57.69 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.27 Total: -17.67 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.32 -9.70 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666734925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.477 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds