Wall clock time and date at job start Tue Mar 31 2020 23:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47539 * 2 1 4 4 N 1.29032 * 124.91444 * 90.00432 * 3 2 1 5 5 C 1.31779 * 117.12649 * 179.97438 * 4 3 2 6 6 C 1.50701 * 122.75508 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.46806 * 304.97453 * 6 5 4 8 8 O 1.21287 * 120.00457 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00241 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00555 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47176 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.51337 * 60.10241 * 11 10 9 13 13 C 1.53302 * 109.51134 * 180.25141 * 11 10 9 14 14 N 1.47147 * 108.38599 * 172.22250 * 13 11 10 15 15 C 1.36934 * 120.98148 * 129.48313 * 14 13 11 16 16 H 1.08000 * 120.00391 * 206.21044 * 15 14 13 17 17 C 1.38810 * 119.99942 * 26.21333 * 15 14 13 18 18 N 1.31620 * 119.99971 * 16.93074 * 17 15 14 19 19 Si 1.86800 * 120.00223 * 196.92450 * 17 15 14 20 20 H 1.48498 * 109.46905 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47028 * 120.00031 * 19 17 15 22 22 H 1.48503 * 109.47383 * 240.00159 * 19 17 15 23 23 C 1.47151 * 118.03774 * 309.46885 * 14 13 11 24 24 C 1.53298 * 108.38510 * 50.53040 * 23 14 13 25 25 O 1.42956 * 109.51135 * 299.99436 * 11 10 9 26 26 C 1.33648 * 114.49792 * 359.97438 * 5 4 3 27 27 S 1.70972 * 124.91921 * 269.69744 * 3 2 1 28 28 H 1.08990 * 109.47781 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46893 * 300.00083 * 1 2 3 30 30 H 1.09002 * 109.47183 * 59.98922 * 1 2 3 31 31 H 1.09000 * 109.47069 * 239.99743 * 2 1 3 32 32 H 1.09004 * 109.47355 * 120.00323 * 2 1 3 33 33 H 1.09000 * 109.46798 * 64.96958 * 6 5 4 34 34 H 1.08996 * 109.47586 * 184.97200 * 6 5 4 35 35 H 0.97007 * 119.99803 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.46873 * 299.99596 * 10 9 7 37 37 H 1.08996 * 109.47104 * 59.99589 * 10 9 7 38 38 H 1.09002 * 109.68092 * 291.95274 * 13 11 10 39 39 H 1.09000 * 109.67632 * 52.49964 * 13 11 10 40 40 H 0.97005 * 120.00294 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.68198 * 290.80908 * 23 14 13 42 42 H 1.08996 * 109.71652 * 170.27200 * 23 14 13 43 43 H 1.09004 * 109.51267 * 187.77300 * 24 23 14 44 44 H 1.08998 * 109.51068 * 67.62225 * 24 23 14 45 45 H 1.08003 * 126.03562 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2787 2.1170 1.0581 5 6 2.7145 3.3477 0.8795 6 6 3.0417 4.2710 2.0247 7 6 1.8469 4.3839 2.9361 8 8 0.8296 3.7750 2.6806 9 7 1.9087 5.1615 4.0351 10 6 0.7474 5.2709 4.9214 11 6 1.0796 6.2084 6.0840 12 1 1.3319 7.1950 5.6955 13 6 -0.1330 6.3185 7.0155 14 7 0.2701 7.0691 8.2153 15 6 -0.4670 8.1333 8.6617 16 1 0.0068 8.9152 9.2367 17 6 -1.8232 8.2072 8.3752 18 7 -2.4716 7.1324 7.9791 19 14 -2.7281 9.8318 8.5520 20 1 -1.7798 10.8794 9.0085 21 1 -3.3035 10.2232 7.2402 22 1 -3.8202 9.6843 9.5474 23 6 1.4884 6.6421 8.9215 24 6 2.6220 6.5161 7.8971 25 8 2.1900 5.6853 6.8169 26 6 2.8434 3.7097 -0.4005 27 16 2.3656 2.3409 -1.4019 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8881 3.8713 2.5832 34 1 3.2962 5.2568 1.6354 35 1 2.7225 5.6483 4.2397 36 1 -0.0992 5.6707 4.3633 37 1 0.4931 4.2849 5.3104 38 1 -0.9401 6.8455 6.5066 39 1 -0.4679 5.3214 7.3015 40 1 -3.4193 7.1841 7.7785 41 1 1.3168 5.6775 9.3995 42 1 1.7554 7.3828 9.6751 43 1 3.4950 6.0697 8.3733 44 1 2.8796 7.5043 7.5160 45 1 3.1834 4.6705 -0.7580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666734925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:21 Heat of formation + Delta-G solvation = -43.172214 kcal Electronic energy + Delta-G solvation = -26750.796358 eV Core-core repulsion = 22894.767355 eV Total energy + Delta-G solvation = -3856.029002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33438 -40.42565 -39.71344 -36.46275 -35.78993 -35.20826 -33.28444 -32.85911 -31.85191 -29.49321 -28.84466 -27.03440 -26.21895 -25.07022 -23.52626 -22.82750 -21.77312 -21.21922 -20.59946 -19.01121 -18.76507 -17.92824 -17.53484 -17.04378 -16.94445 -16.39849 -16.14519 -16.09001 -15.61163 -15.51312 -15.30205 -15.06482 -15.01733 -14.64106 -14.55777 -14.25471 -13.95873 -13.90981 -13.28261 -13.15564 -13.02545 -12.95164 -12.71093 -12.55476 -12.51443 -12.33357 -12.19182 -12.07427 -12.02575 -11.88151 -11.32345 -10.98580 -10.78591 -10.56917 -10.48456 -10.28304 -10.08999 -9.62600 -8.77709 -7.92876 -5.40768 -0.20960 0.48321 0.78848 1.44560 1.46397 1.57214 1.70816 1.74836 2.31087 2.47739 2.78792 3.12268 3.22265 3.48977 3.74495 3.97212 4.06292 4.10607 4.11983 4.22167 4.27139 4.30773 4.36231 4.45412 4.51142 4.51828 4.59672 4.65852 4.67760 4.76323 4.84013 4.93700 4.96950 5.04501 5.05980 5.18381 5.21423 5.31131 5.41856 5.50715 5.58606 6.25200 6.31622 6.61400 6.91331 7.03352 7.32561 7.72561 8.26319 9.13089 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.002170 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.749145 B =12898.300217 C =13427.851498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.033 3.967 4 N -0.489 5.489 5 C 0.059 3.941 6 C -0.058 4.058 7 C 0.510 3.490 8 O -0.577 6.577 9 N -0.710 5.710 10 C 0.146 3.854 11 C 0.079 3.921 12 H 0.068 0.932 13 C 0.159 3.841 14 N -0.615 5.615 15 C -0.264 4.264 16 H 0.076 0.924 17 C -0.053 4.053 18 N -0.937 5.937 19 Si 0.971 3.029 20 H -0.262 1.262 21 H -0.289 1.289 22 H -0.294 1.294 23 C 0.100 3.900 24 C 0.057 3.943 25 O -0.390 6.390 26 C -0.256 4.256 27 S 0.146 5.854 28 H 0.088 0.912 29 H 0.031 0.969 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.417 0.583 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.066 0.934 39 H -0.004 1.004 40 H 0.251 0.749 41 H 0.013 0.987 42 H 0.074 0.926 43 H 0.122 0.878 44 H 0.057 0.943 45 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.257 -7.814 -19.737 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.246 4.246 4 N -0.203 5.203 5 C -0.073 4.073 6 C -0.100 4.100 7 C 0.297 3.703 8 O -0.456 6.456 9 N -0.363 5.363 10 C 0.021 3.979 11 C 0.019 3.981 12 H 0.086 0.914 13 C 0.032 3.968 14 N -0.339 5.339 15 C -0.394 4.394 16 H 0.094 0.906 17 C -0.249 4.249 18 N -0.583 5.583 19 Si 0.799 3.201 20 H -0.186 1.186 21 H -0.216 1.216 22 H -0.221 1.221 23 C -0.025 4.025 24 C -0.020 4.020 25 O -0.309 6.309 26 C -0.395 4.395 27 S 0.401 5.599 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.147 0.853 34 H 0.166 0.834 35 H 0.254 0.746 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.014 0.986 40 H 0.060 0.940 41 H 0.031 0.969 42 H 0.092 0.908 43 H 0.139 0.861 44 H 0.075 0.925 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 15.334 -8.848 -20.537 27.114 hybrid contribution -0.890 1.589 1.570 2.405 sum 14.443 -7.259 -18.967 24.921 Atomic orbital electron populations 1.21733 0.93662 1.03346 1.01467 1.20339 0.96581 0.86670 1.05163 1.27502 1.03044 1.02815 0.91195 1.65996 1.14308 1.06962 1.33052 1.19895 1.01585 0.91418 0.94418 1.20319 0.96207 1.00978 0.92450 1.21057 0.89966 0.77842 0.81475 1.90721 1.34485 1.46234 1.74129 1.45753 1.17094 1.49019 1.24417 1.20991 0.88955 0.98872 0.89052 1.22727 0.88336 0.95944 0.91059 0.91409 1.21081 0.94285 0.93942 0.87453 1.44371 1.27316 1.34988 1.27232 1.19600 0.90081 0.97946 1.31748 0.90644 1.25880 0.97087 1.00198 1.01687 1.70203 1.08489 1.28293 1.51320 0.85152 0.78253 0.79765 0.76943 1.18599 1.21612 1.22070 1.21847 0.87721 0.97778 0.95135 1.23090 0.96443 0.95105 0.87376 1.87796 1.48651 1.48664 1.45766 1.27164 1.11533 1.05682 0.95100 1.83601 1.59693 1.04972 1.11611 0.89334 0.94953 0.92095 0.86873 0.89405 0.85328 0.83360 0.74625 0.91189 0.93250 0.91567 0.98622 0.94000 0.96894 0.90805 0.86053 0.92489 0.77553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.05 -0.79 6.52 29.84 0.19 -0.59 16 3 C 0.03 0.73 6.64 88.52 0.59 1.32 16 4 N -0.49 -13.84 9.68 -179.40 -1.74 -15.58 16 5 C 0.06 1.38 5.63 41.52 0.23 1.62 16 6 C -0.06 -1.10 6.19 29.10 0.18 -0.92 16 7 C 0.51 14.96 7.80 87.66 0.68 15.65 16 8 O -0.58 -23.09 15.45 -3.05 -0.05 -23.14 16 9 N -0.71 -19.60 5.45 -463.07 -2.52 -22.13 16 10 C 0.15 5.21 5.37 86.38 0.46 5.67 16 11 C 0.08 2.97 2.87 30.70 0.09 3.06 16 12 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 13 C 0.16 7.83 4.73 86.36 0.41 8.24 16 14 N -0.61 -30.95 3.05 -697.54 -2.13 -33.08 16 15 C -0.26 -14.35 9.65 84.03 0.81 -13.54 16 16 H 0.08 3.92 7.88 -2.91 -0.02 3.90 16 17 C -0.05 -2.96 4.95 84.86 0.42 -2.54 16 18 N -0.94 -56.05 11.14 21.65 0.24 -55.81 16 19 Si 0.97 44.49 29.59 68.60 2.03 46.52 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 23 C 0.10 4.07 6.73 86.36 0.58 4.66 16 24 C 0.06 1.81 6.99 72.08 0.50 2.31 16 25 O -0.39 -13.71 10.13 -148.98 -1.51 -15.22 16 26 C -0.26 -4.49 11.07 66.78 0.74 -3.76 16 27 S 0.15 2.42 23.18 -56.49 -1.31 1.11 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.15 1.56 8.03 -2.39 -0.02 1.54 16 35 H 0.42 8.81 8.35 -92.70 -0.77 8.04 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 3.63 6.14 -2.39 -0.01 3.62 16 39 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 41 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 43 H 0.12 2.94 8.14 -2.38 -0.02 2.92 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.21 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -78.66 384.59 -0.15 -78.81 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.22 Total: 19.14 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 6.61 Total: 19.37 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -6.15 Total: -126.59 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.56 Total: -38.36 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.31 Total: 1.11 kcal Total: -78.66 -0.15 -78.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666734925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.641 kcal (2) G-P(sol) polarization free energy of solvation -78.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds