Wall clock time and date at job start Tue Mar 31 2020 23:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46764 * 2 1 4 4 C 1.33822 * 124.52125 * 89.99913 * 3 2 1 5 5 C 1.37478 * 115.10168 * 179.76597 * 4 3 2 6 6 C 1.36651 * 113.29302 * 0.45952 * 5 4 3 7 7 C 1.46586 * 125.45640 * 179.83374 * 6 5 4 8 8 O 1.21706 * 119.99958 * 359.72018 * 7 6 5 9 9 N 1.34774 * 120.00168 * 179.71737 * 7 6 5 10 10 C 1.46495 * 120.00080 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46996 * 35.00503 * 10 9 7 12 12 C 1.52994 * 109.47359 * 275.00294 * 10 9 7 13 13 C 1.53006 * 109.46914 * 154.99872 * 10 9 7 14 14 N 1.46898 * 109.47138 * 305.00206 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00058 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00409 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46949 * 60.00154 * 23 21 19 25 25 H 1.48496 * 109.47431 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47561 * 300.00356 * 23 21 19 27 27 S 1.70613 * 124.52584 * 270.02597 * 3 2 1 28 28 H 1.08994 * 109.47490 * 60.00318 * 1 2 3 29 29 H 1.09004 * 109.46934 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47505 * 299.99808 * 1 2 3 31 31 H 1.09001 * 109.47240 * 240.00799 * 2 1 3 32 32 H 1.08994 * 109.47116 * 120.00074 * 2 1 3 33 33 H 1.07995 * 122.44967 * 0.02562 * 4 3 2 34 34 H 1.07994 * 123.35603 * 180.27180 * 5 4 3 35 35 H 0.97006 * 119.99482 * 0.02562 * 9 7 6 36 36 H 1.09006 * 109.46971 * 299.99615 * 12 10 9 37 37 H 1.08990 * 109.47506 * 59.99735 * 12 10 9 38 38 H 1.09002 * 109.47542 * 180.02562 * 12 10 9 39 39 H 1.08997 * 109.46770 * 185.00153 * 13 10 9 40 40 H 1.08995 * 109.47019 * 65.00366 * 13 10 9 41 41 H 1.00904 * 110.99913 * 303.95145 * 14 13 10 42 42 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 43 43 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 44 44 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 45 45 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2850 2.1359 1.1026 5 6 2.7418 3.4129 0.8776 6 6 2.8454 3.7238 -0.4490 7 6 3.2996 5.0090 -0.9882 8 8 3.6177 5.9079 -0.2319 9 7 3.3650 5.1952 -2.3214 10 6 3.8184 6.4798 -2.8603 11 1 4.5900 6.8940 -2.2113 12 6 2.6367 7.4490 -2.9306 13 6 4.3908 6.2706 -4.2637 14 7 5.4466 5.2504 -4.2150 15 6 6.0211 5.0232 -5.5478 16 6 7.0985 3.9734 -5.4581 17 8 7.3615 3.4642 -4.3892 18 7 7.7696 3.6003 -6.5657 19 6 8.7495 2.6449 -6.4842 20 1 8.9837 2.1915 -5.5324 21 6 9.4411 2.2598 -7.6262 22 7 9.1557 2.8111 -8.7844 23 14 10.7766 0.9585 -7.5151 24 1 10.1924 -0.3081 -7.0054 25 1 11.3569 0.7284 -8.8624 26 1 11.8418 1.4201 -6.5891 27 16 2.3539 2.3327 -1.4056 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.1445 1.7374 2.0965 34 1 2.9908 4.1027 1.6703 35 1 3.1112 4.4787 -2.9242 36 1 1.8652 7.0347 -3.5797 37 1 2.2290 7.5979 -1.9308 38 1 2.9739 8.4047 -3.3319 39 1 4.8086 7.2087 -4.6292 40 1 3.5974 5.9406 -4.9342 41 1 6.1632 5.5031 -3.5510 42 1 5.2391 4.6847 -6.2276 43 1 6.4502 5.9527 -5.9218 44 1 7.5590 4.0072 -7.4206 45 1 9.6388 2.5426 -9.5816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669345300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:52 Heat of formation + Delta-G solvation = -77.754274 kcal Electronic energy + Delta-G solvation = -26144.469938 eV Core-core repulsion = 22286.941345 eV Total energy + Delta-G solvation = -3857.528593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94794 -40.12585 -38.98287 -37.73194 -36.03189 -35.14741 -34.66886 -33.25745 -32.26524 -29.55094 -28.95667 -26.74299 -26.24814 -24.64612 -23.38720 -23.00642 -21.79529 -21.05030 -20.26396 -19.88230 -18.97260 -18.00906 -17.41983 -17.00772 -16.69651 -16.38254 -16.26411 -15.97751 -15.80719 -15.27051 -15.23762 -15.02653 -14.88169 -14.70012 -14.27441 -14.07506 -13.86327 -13.54340 -13.42996 -13.23379 -13.07941 -13.01052 -12.87076 -12.78726 -12.69451 -12.43102 -12.39822 -12.12909 -12.06762 -11.88485 -11.67743 -11.50033 -11.16688 -10.36126 -10.17910 -10.01015 -9.62345 -9.53093 -9.35925 -8.46485 -5.94937 -0.49637 0.47519 0.91786 1.39501 1.39554 1.41501 1.52144 2.06658 2.10387 2.22763 2.29158 2.89372 3.21063 3.51313 3.70542 3.75793 3.90976 4.13820 4.14643 4.31809 4.34896 4.37172 4.40403 4.48611 4.52391 4.58888 4.63790 4.73799 4.76837 4.79339 4.91810 4.99494 5.04894 5.14385 5.21382 5.26042 5.34216 5.40883 5.43245 5.47200 5.86634 6.08836 6.29798 6.46249 6.60999 7.12433 7.13342 7.57351 8.13226 8.70658 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.002628 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.385823 B =10653.235835 C =12681.304462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.187 4.187 4 C -0.162 4.162 5 C -0.058 4.058 6 C -0.301 4.301 7 C 0.588 3.412 8 O -0.579 6.579 9 N -0.697 5.697 10 C 0.144 3.856 11 H 0.067 0.933 12 C -0.152 4.152 13 C 0.054 3.946 14 N -0.682 5.682 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.273 1.273 27 S 0.221 5.779 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.166 0.834 34 H 0.149 0.851 35 H 0.407 0.593 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.340 0.660 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.343 1.292 11.337 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 C -0.307 4.307 4 C -0.192 4.192 5 C -0.092 4.092 6 C -0.421 4.421 7 C 0.376 3.624 8 O -0.461 6.461 9 N -0.347 5.347 10 C 0.039 3.961 11 H 0.085 0.915 12 C -0.211 4.211 13 C -0.075 4.075 14 N -0.314 5.314 15 C -0.066 4.066 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.199 1.199 27 S 0.490 5.510 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.184 0.816 34 H 0.167 0.833 35 H 0.242 0.758 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.158 0.842 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.398 0.763 10.699 23.047 hybrid contribution 1.460 0.457 0.815 1.733 sum -18.938 1.221 11.514 22.197 Atomic orbital electron populations 1.21790 0.93049 1.03129 1.02360 1.20312 0.97112 0.87817 1.04595 1.24700 1.05630 1.03063 0.97333 1.20119 1.04867 0.93404 1.00778 1.20919 0.96306 0.97093 0.94864 1.24597 1.18615 0.99811 0.99050 1.17203 0.76800 0.85726 0.82698 1.90763 1.51912 1.44382 1.59059 1.45727 1.66496 1.16966 1.05521 1.21075 0.97089 0.83532 0.94359 0.91478 1.22065 0.97452 0.99389 1.02172 1.22397 0.94962 0.94404 0.95783 1.60074 1.16256 1.47946 1.07081 1.21550 0.95918 0.96515 0.92623 1.20946 0.85686 0.86999 0.83976 1.90508 1.70452 1.60096 1.29998 1.41918 1.33067 1.36590 1.09468 1.19602 1.13777 1.17192 0.95775 0.90527 1.26001 1.00654 1.00403 0.94095 1.69660 1.43051 1.43916 0.99441 0.85028 0.77792 0.78076 0.77699 1.19682 1.19410 1.19875 1.83050 1.58779 1.01559 1.07591 0.92873 0.90356 0.92092 0.90177 0.88288 0.81618 0.83348 0.75753 0.90678 0.93534 0.89483 0.91523 0.88334 0.84234 0.87115 0.91377 0.76907 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 71.98 0.71 -0.80 16 2 C -0.06 -0.76 6.37 29.85 0.19 -0.57 16 3 C -0.19 -3.43 5.53 24.68 0.14 -3.29 16 4 C -0.16 -3.05 10.00 21.09 0.21 -2.84 16 5 C -0.06 -1.38 10.01 21.72 0.22 -1.16 16 6 C -0.30 -7.97 6.45 24.08 0.16 -7.82 16 7 C 0.59 17.77 7.75 86.42 0.67 18.44 16 8 O -0.58 -21.03 16.50 -4.37 -0.07 -21.10 16 9 N -0.70 -17.71 4.80 -446.59 -2.14 -19.85 16 10 C 0.14 3.23 2.81 44.99 0.13 3.36 16 11 H 0.07 1.82 7.58 -2.39 -0.02 1.80 16 12 C -0.15 -2.65 9.48 71.98 0.68 -1.97 16 13 C 0.05 1.09 5.24 86.31 0.45 1.55 16 14 N -0.68 -20.32 5.85 -517.92 -3.03 -23.35 16 15 C 0.07 2.12 6.17 85.56 0.53 2.65 16 16 C 0.44 20.40 7.82 87.66 0.69 21.09 16 17 O -0.62 -34.59 15.78 -3.06 -0.05 -34.64 16 18 N -0.57 -29.02 5.29 -306.99 -1.62 -30.64 16 19 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 20 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 22 N -0.92 -49.25 13.05 21.66 0.28 -48.97 16 23 Si 0.99 42.86 29.55 68.60 2.03 44.88 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 S 0.22 4.71 22.10 -56.49 -1.25 3.47 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.41 9.52 7.72 -92.70 -0.72 8.81 16 36 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.34 11.55 8.43 -89.69 -0.76 10.79 16 42 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 45 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -73.37 397.85 -0.98 -74.35 By element: Atomic # 1 Polarization: 46.65 SS G_CDS: -1.17 Total: 45.48 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 6.05 Total: 10.38 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -6.51 Total: -122.81 kcal Atomic # 8 Polarization: -55.62 SS G_CDS: -0.12 Total: -55.74 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.25 Total: 3.47 kcal Total: -73.37 -0.98 -74.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669345300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.406 kcal (2) G-P(sol) polarization free energy of solvation -73.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds