Wall clock time and date at job start Tue Mar 31 2020 22:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.77226 * 127.34089 * 2 1 4 4 C 1.72208 * 94.85092 * 180.02562 * 3 2 1 5 5 O 1.21823 * 127.06025 * 180.02562 * 4 3 2 6 6 N 1.34249 * 105.88275 * 0.02562 * 4 3 2 7 7 C 1.46494 * 121.38025 * 179.97438 * 6 4 3 8 8 C 1.50705 * 109.47124 * 90.02499 * 7 6 4 9 9 O 1.21277 * 120.00033 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99863 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99841 * 179.97438 * 10 8 7 12 12 C 1.53001 * 110.91697 * 56.09677 * 11 10 8 13 13 C 1.55157 * 111.00466 * 179.97438 * 11 10 8 14 14 C 1.54325 * 102.94184 * 82.57497 * 13 11 10 15 15 N 1.47022 * 107.26948 * 22.19107 * 14 13 11 16 16 C 1.36945 * 125.64832 * 181.02381 * 15 14 13 17 17 H 1.07997 * 119.99756 * 180.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47423 * 108.70390 * 1.29074 * 15 14 13 25 25 C 1.32570 * 127.33975 * 180.31422 * 2 1 3 26 26 C 1.50691 * 121.64537 * 359.93926 * 25 2 1 27 27 H 1.09005 * 109.47014 * 359.97042 * 1 2 3 28 28 H 1.08996 * 109.47775 * 119.97923 * 1 2 3 29 29 H 1.09008 * 109.46944 * 239.97804 * 1 2 3 30 30 H 1.08994 * 109.47420 * 330.02225 * 7 6 4 31 31 H 1.09002 * 109.46828 * 210.02083 * 7 6 4 32 32 H 0.97003 * 120.00176 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47690 * 183.89832 * 12 11 10 34 34 H 1.08999 * 109.46882 * 303.90238 * 12 11 10 35 35 H 1.09005 * 109.47260 * 63.90076 * 12 11 10 36 36 H 1.09000 * 110.72140 * 324.21327 * 13 11 10 37 37 H 1.08998 * 110.72520 * 200.93646 * 13 11 10 38 38 H 1.09002 * 109.88274 * 262.77538 * 14 13 11 39 39 H 1.09000 * 110.01178 * 141.68100 * 14 13 11 40 40 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 41 41 H 1.09000 * 110.37068 * 94.48354 * 24 15 14 42 42 H 1.09005 * 110.36651 * 216.80519 * 24 15 14 43 43 H 1.09004 * 109.46923 * 270.24095 * 26 25 2 44 44 H 1.09000 * 109.47612 * 30.23823 * 26 25 2 45 45 H 1.08996 * 109.47408 * 150.23968 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5819 1.4090 0.0000 4 6 4.0345 0.4840 -0.0008 5 8 5.1759 0.9096 -0.0006 6 7 3.6508 -0.8025 -0.0016 7 6 4.6313 -1.8909 -0.0029 8 6 4.9678 -2.2657 1.4175 9 8 4.4409 -1.6808 2.3400 10 7 5.8551 -3.2501 1.6624 11 6 6.1826 -3.6140 3.0432 12 6 4.9206 -3.9859 3.8241 13 6 7.2207 -4.7666 3.0833 14 6 8.5635 -4.0289 2.8981 15 7 8.3526 -2.6308 3.3010 16 6 9.2965 -1.6392 3.2665 17 1 9.0414 -0.6395 3.5857 18 6 10.5811 -1.9190 2.8213 19 7 10.8919 -3.1373 2.4318 20 14 11.8684 -0.5663 2.7735 21 1 13.1488 -1.1192 2.2635 22 1 11.4076 0.5241 1.8770 23 1 12.0725 -0.0285 4.1426 24 6 6.9586 -2.4746 3.7545 25 6 2.3110 -1.0540 -0.0058 26 6 1.7707 -2.4607 -0.0121 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5135 -0.8901 29 1 -0.3633 -0.5142 0.8899 30 1 5.5355 -1.5648 -0.5166 31 1 4.2130 -2.7560 -0.5176 32 1 6.2768 -3.7177 0.9246 33 1 5.1818 -4.1850 4.8635 34 1 4.2096 -3.1609 3.7798 35 1 4.4712 -4.8769 3.3855 36 1 7.0500 -5.4678 2.2664 37 1 7.1915 -5.2787 4.0450 38 1 8.8686 -4.0713 1.8525 39 1 9.3290 -4.4843 3.5263 40 1 11.7895 -3.3327 2.1203 41 1 6.8967 -2.5884 4.8368 42 1 6.5676 -1.5033 3.4514 43 1 1.6372 -2.8032 1.0140 44 1 0.8111 -2.4790 -0.5289 45 1 2.4727 -3.1173 -0.5260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671694943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:02 Heat of formation + Delta-G solvation = -5.592077 kcal Electronic energy + Delta-G solvation = -28441.795633 eV Core-core repulsion = 24587.396228 eV Total energy + Delta-G solvation = -3854.399405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.27924 -39.60604 -37.70883 -37.24195 -33.98458 -33.69837 -32.09164 -30.53136 -29.98542 -29.16675 -28.64190 -25.69167 -25.25006 -23.95546 -23.43519 -21.10188 -20.22383 -19.77472 -19.16522 -18.34577 -17.64029 -17.00175 -16.66084 -15.70319 -15.56608 -15.26659 -14.96452 -14.59968 -14.16849 -14.04069 -13.88481 -13.82414 -13.68409 -13.32545 -13.11685 -12.95197 -12.76313 -12.65838 -12.32486 -11.98984 -11.95292 -11.74784 -11.68306 -11.48438 -11.02682 -10.88303 -10.84317 -10.45104 -10.38573 -10.12094 -10.07332 -10.04346 -9.75756 -9.64497 -9.17663 -8.72886 -8.54173 -7.90286 -6.79392 -5.69048 -3.01004 0.91378 1.31210 1.67851 2.11092 2.62091 2.73587 3.40865 3.45384 3.48267 3.51192 4.28246 4.53689 4.53964 4.71613 4.78134 4.90246 4.99259 5.10829 5.14396 5.17298 5.33251 5.34533 5.45027 5.47158 5.50963 5.59507 5.64784 5.69516 5.95959 6.05180 6.08565 6.10726 6.31233 6.35778 6.48650 6.62493 6.63998 6.77886 7.05212 7.31769 7.54070 7.54854 7.74895 7.82429 8.27598 8.39834 9.25742 9.85289 10.50305 11.42961 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.003577 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.561093 B = 7825.814979 C = 9177.527081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.213 4.213 3 S -0.003 6.003 4 C 0.489 3.511 5 O -0.461 6.461 6 N -0.513 5.513 7 C 0.078 3.922 8 C 0.503 3.497 9 O -0.526 6.526 10 N -0.695 5.695 11 C 0.157 3.843 12 C -0.151 4.151 13 C -0.146 4.146 14 C 0.177 3.823 15 N -0.602 5.602 16 C -0.222 4.222 17 H 0.075 0.925 18 C -0.008 4.008 19 N -0.926 5.926 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.134 3.866 25 C 0.108 3.892 26 C -0.099 4.099 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.400 0.600 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.251 0.749 41 H 0.026 0.974 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.965 -3.499 -7.849 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.333 4.333 3 S 0.240 5.760 4 C 0.170 3.830 5 O -0.339 6.339 6 N -0.233 5.233 7 C -0.051 4.051 8 C 0.286 3.714 9 O -0.402 6.402 10 N -0.346 5.346 11 C 0.071 3.929 12 C -0.210 4.210 13 C -0.184 4.184 14 C 0.052 3.948 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.093 0.907 18 C -0.204 4.204 19 N -0.574 5.574 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.211 1.211 23 H -0.212 1.212 24 C 0.007 3.993 25 C -0.003 4.003 26 C -0.158 4.158 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.234 0.766 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.517 -1.429 -7.235 23.694 hybrid contribution 1.565 -0.909 -0.343 1.842 sum -20.952 -2.337 -7.578 22.403 Atomic orbital electron populations 1.20044 0.85879 1.03095 1.02587 1.23384 0.99487 0.92126 1.18309 1.85019 0.98087 1.11340 1.81540 1.21470 0.94566 0.84609 0.82316 1.91029 1.19142 1.71436 1.52301 1.45519 1.05629 1.06997 1.65152 1.21757 0.94891 0.91357 0.97118 1.20464 0.80016 0.80166 0.90713 1.90680 1.52700 1.51700 1.45146 1.45712 1.43100 1.36770 1.08978 1.21546 0.93945 0.96617 0.80829 1.22024 0.97770 1.01586 0.99601 1.23228 0.97369 0.96326 1.01516 1.21164 0.90293 0.83543 0.99802 1.44432 1.06008 1.06505 1.75926 1.19026 0.89618 0.89609 1.36797 0.90679 1.24743 0.97338 0.96817 1.01504 1.69933 1.19514 1.18054 1.49923 0.86210 0.80874 0.80989 0.77838 1.21604 1.21133 1.21182 1.21901 0.85702 0.96338 0.95405 1.19151 0.81912 0.98049 1.01161 1.20762 1.01749 0.89177 1.04100 0.90993 0.90694 0.90633 0.85775 0.86265 0.76602 0.91858 0.90481 0.93233 0.91711 0.90815 0.93645 0.93771 0.93841 0.95681 0.93352 0.89437 0.89251 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 9.56 36.00 0.34 -0.01 16 2 C -0.21 -2.15 6.72 -36.22 -0.24 -2.39 16 3 S 0.00 -0.04 22.97 -107.50 -2.47 -2.51 16 4 C 0.49 8.11 8.27 53.82 0.45 8.56 16 5 O -0.46 -9.52 17.55 5.08 0.09 -9.43 16 6 N -0.51 -6.92 2.09 -118.57 -0.25 -7.17 16 7 C 0.08 0.95 5.75 -5.19 -0.03 0.92 16 8 C 0.50 7.90 7.28 -10.98 -0.08 7.82 16 9 O -0.53 -10.04 13.27 5.56 0.07 -9.97 16 10 N -0.69 -10.68 5.19 -45.52 -0.24 -10.92 16 11 C 0.16 2.71 0.82 -129.55 -0.11 2.61 16 12 C -0.15 -2.23 8.59 37.16 0.32 -1.91 16 13 C -0.15 -2.51 5.97 -24.90 -0.15 -2.66 16 14 C 0.18 4.14 5.37 -3.06 -0.02 4.13 16 15 N -0.60 -15.68 3.39 -169.93 -0.58 -16.26 16 16 C -0.22 -6.48 10.28 -15.06 -0.15 -6.63 16 17 H 0.08 2.20 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.93 -27.28 10.31 55.49 0.57 -26.71 16 20 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.13 2.99 6.18 -2.41 -0.01 2.97 16 25 C 0.11 1.13 6.59 -82.51 -0.54 0.59 16 26 C -0.10 -0.65 9.46 36.00 0.34 -0.31 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.32 7.99 -51.93 -0.41 -0.10 16 29 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.12 1.61 7.80 -51.93 -0.41 1.20 16 31 H 0.12 0.90 6.12 -51.93 -0.32 0.58 16 32 H 0.40 5.28 8.51 -40.82 -0.35 4.93 16 33 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.08 1.25 5.92 -51.93 -0.31 0.95 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 37 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 38 H 0.05 1.16 7.38 -51.93 -0.38 0.77 16 39 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.03 0.57 7.99 -51.93 -0.41 0.15 16 42 H 0.05 1.20 6.89 -51.93 -0.36 0.84 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.37 7.41 -51.93 -0.39 -0.01 16 45 H 0.07 0.40 6.18 -51.93 -0.32 0.08 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -36.73 374.56 -8.69 -45.42 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.54 Total: 0.49 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 0.02 Total: 13.35 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.49 Total: -61.06 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.16 Total: -19.40 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.47 Total: -2.51 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.73 -8.69 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671694943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.830 kcal (2) G-P(sol) polarization free energy of solvation -36.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds