Wall clock time and date at job start Tue Mar 31 2020 22:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.77226 * 127.34089 * 2 1 4 4 C 1.72208 * 94.85092 * 180.02562 * 3 2 1 5 5 O 1.21823 * 127.06025 * 180.02562 * 4 3 2 6 6 N 1.34249 * 105.88275 * 0.02562 * 4 3 2 7 7 C 1.46494 * 121.38025 * 179.97438 * 6 4 3 8 8 C 1.50705 * 109.47124 * 90.02499 * 7 6 4 9 9 O 1.21277 * 120.00033 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99863 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99841 * 179.97438 * 10 8 7 12 12 C 1.53001 * 110.91697 * 56.09677 * 11 10 8 13 13 C 1.55157 * 111.00466 * 179.97438 * 11 10 8 14 14 C 1.54325 * 102.94184 * 82.57497 * 13 11 10 15 15 N 1.47022 * 107.26948 * 22.19107 * 14 13 11 16 16 C 1.36945 * 125.64832 * 181.02381 * 15 14 13 17 17 H 1.07997 * 119.99756 * 180.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47423 * 108.70390 * 1.29074 * 15 14 13 25 25 C 1.32570 * 127.33975 * 180.31422 * 2 1 3 26 26 C 1.50691 * 121.64537 * 359.93926 * 25 2 1 27 27 H 1.09005 * 109.47014 * 359.97042 * 1 2 3 28 28 H 1.08996 * 109.47775 * 119.97923 * 1 2 3 29 29 H 1.09008 * 109.46944 * 239.97804 * 1 2 3 30 30 H 1.08994 * 109.47420 * 330.02225 * 7 6 4 31 31 H 1.09002 * 109.46828 * 210.02083 * 7 6 4 32 32 H 0.97003 * 120.00176 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47690 * 183.89832 * 12 11 10 34 34 H 1.08999 * 109.46882 * 303.90238 * 12 11 10 35 35 H 1.09005 * 109.47260 * 63.90076 * 12 11 10 36 36 H 1.09000 * 110.72140 * 324.21327 * 13 11 10 37 37 H 1.08998 * 110.72520 * 200.93646 * 13 11 10 38 38 H 1.09002 * 109.88274 * 262.77538 * 14 13 11 39 39 H 1.09000 * 110.01178 * 141.68100 * 14 13 11 40 40 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 41 41 H 1.09000 * 110.37068 * 94.48354 * 24 15 14 42 42 H 1.09005 * 110.36651 * 216.80519 * 24 15 14 43 43 H 1.09004 * 109.46923 * 270.24095 * 26 25 2 44 44 H 1.09000 * 109.47612 * 30.23823 * 26 25 2 45 45 H 1.08996 * 109.47408 * 150.23968 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5819 1.4090 0.0000 4 6 4.0345 0.4840 -0.0008 5 8 5.1759 0.9096 -0.0006 6 7 3.6508 -0.8025 -0.0016 7 6 4.6313 -1.8909 -0.0029 8 6 4.9678 -2.2657 1.4175 9 8 4.4409 -1.6808 2.3400 10 7 5.8551 -3.2501 1.6624 11 6 6.1826 -3.6140 3.0432 12 6 4.9206 -3.9859 3.8241 13 6 7.2207 -4.7666 3.0833 14 6 8.5635 -4.0289 2.8981 15 7 8.3526 -2.6308 3.3010 16 6 9.2965 -1.6392 3.2665 17 1 9.0414 -0.6395 3.5857 18 6 10.5811 -1.9190 2.8213 19 7 10.8919 -3.1373 2.4318 20 14 11.8684 -0.5663 2.7735 21 1 13.1488 -1.1192 2.2635 22 1 11.4076 0.5241 1.8770 23 1 12.0725 -0.0285 4.1426 24 6 6.9586 -2.4746 3.7545 25 6 2.3110 -1.0540 -0.0058 26 6 1.7707 -2.4607 -0.0121 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5135 -0.8901 29 1 -0.3633 -0.5142 0.8899 30 1 5.5355 -1.5648 -0.5166 31 1 4.2130 -2.7560 -0.5176 32 1 6.2768 -3.7177 0.9246 33 1 5.1818 -4.1850 4.8635 34 1 4.2096 -3.1609 3.7798 35 1 4.4712 -4.8769 3.3855 36 1 7.0500 -5.4678 2.2664 37 1 7.1915 -5.2787 4.0450 38 1 8.8686 -4.0713 1.8525 39 1 9.3290 -4.4843 3.5263 40 1 11.7895 -3.3327 2.1203 41 1 6.8967 -2.5884 4.8368 42 1 6.5676 -1.5033 3.4514 43 1 1.6372 -2.8032 1.0140 44 1 0.8111 -2.4790 -0.5289 45 1 2.4727 -3.1173 -0.5260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671694943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:01 Heat of formation + Delta-G solvation = -31.941299 kcal Electronic energy + Delta-G solvation = -28442.938221 eV Core-core repulsion = 24587.396228 eV Total energy + Delta-G solvation = -3855.541993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.34875 -40.95559 -38.99789 -38.67530 -35.72314 -34.59192 -33.76516 -32.06099 -30.92711 -30.41827 -29.88737 -27.56765 -26.07652 -25.47828 -24.76272 -22.49398 -21.89492 -20.83450 -20.57461 -19.28123 -19.13287 -18.51902 -18.01934 -17.06782 -16.85354 -16.71686 -16.41560 -16.17806 -15.65924 -15.31480 -15.02136 -14.88063 -14.76428 -14.42503 -14.29493 -13.93114 -13.77834 -13.57682 -13.51231 -13.38670 -13.34641 -13.08487 -12.90909 -12.79233 -12.74774 -12.43932 -12.17390 -12.09065 -12.02630 -11.85601 -11.75062 -11.60588 -11.29869 -10.93136 -10.76224 -10.33408 -10.07544 -8.91666 -8.87885 -7.92036 -5.25364 -0.18328 0.35737 0.77636 1.04050 1.37737 1.40599 1.47032 1.49665 1.65018 2.23928 2.42903 3.25574 3.45856 3.52389 3.63687 3.74531 3.77391 4.00025 4.01963 4.14351 4.16937 4.28037 4.62083 4.64670 4.66324 4.72472 4.75573 4.80517 4.82529 4.90849 4.93901 4.98276 4.99527 5.07001 5.15946 5.34972 5.36635 5.42155 5.59311 5.65716 5.67954 5.74304 6.15509 6.19172 6.53928 7.07191 7.18536 7.71996 8.35034 9.17052 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.003577 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.561093 B = 7825.814979 C = 9177.527081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.200 4.200 3 S -0.012 6.012 4 C 0.463 3.537 5 O -0.528 6.528 6 N -0.511 5.511 7 C 0.080 3.920 8 C 0.500 3.500 9 O -0.563 6.563 10 N -0.691 5.691 11 C 0.170 3.830 12 C -0.140 4.140 13 C -0.125 4.125 14 C 0.183 3.817 15 N -0.621 5.621 16 C -0.248 4.248 17 H 0.059 0.941 18 C -0.053 4.053 19 N -0.941 5.941 20 Si 0.970 3.030 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.279 1.279 24 C 0.130 3.870 25 C 0.090 3.910 26 C -0.095 4.095 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.176 0.824 32 H 0.412 0.588 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.020 0.980 39 H 0.009 0.991 40 H 0.250 0.750 41 H 0.023 0.977 42 H 0.013 0.987 43 H 0.086 0.914 44 H 0.121 0.879 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.997 -5.948 -8.822 28.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.319 4.319 3 S 0.231 5.769 4 C 0.146 3.854 5 O -0.411 6.411 6 N -0.230 5.230 7 C -0.048 4.048 8 C 0.286 3.714 9 O -0.441 6.441 10 N -0.343 5.343 11 C 0.083 3.917 12 C -0.198 4.198 13 C -0.163 4.163 14 C 0.058 3.942 15 N -0.347 5.347 16 C -0.377 4.377 17 H 0.077 0.923 18 C -0.247 4.247 19 N -0.589 5.589 20 Si 0.798 3.202 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.205 1.205 24 C 0.003 3.997 25 C -0.019 4.019 26 C -0.154 4.154 27 H 0.093 0.907 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.193 0.807 32 H 0.248 0.752 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.110 0.890 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.059 0.941 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.104 0.896 44 H 0.139 0.861 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.618 -3.927 -8.220 27.189 hybrid contribution 2.412 -0.083 -0.007 2.414 sum -23.205 -4.010 -8.227 24.945 Atomic orbital electron populations 1.20269 0.82584 1.04044 1.04686 1.24077 1.00987 0.89773 1.17099 1.84970 0.97798 1.13247 1.80849 1.21976 0.94651 0.86104 0.82635 1.90971 1.21581 1.73119 1.55475 1.45625 1.07188 1.06188 1.64041 1.21897 0.95062 0.92856 0.94999 1.21026 0.79291 0.79356 0.91766 1.90667 1.54108 1.52696 1.46673 1.45671 1.42933 1.37014 1.08670 1.21385 0.94747 0.93915 0.81688 1.21929 0.95706 1.02400 0.99751 1.23097 0.92912 0.96122 1.04191 1.20995 0.93206 0.82722 0.97250 1.44670 1.06982 1.07110 1.75973 1.19212 0.91051 0.90075 1.37347 0.92260 1.25451 0.98862 0.98993 1.01391 1.70112 1.19585 1.19202 1.50026 0.85299 0.78622 0.78457 0.77841 1.20763 1.21372 1.20541 1.22024 0.84842 0.97031 0.95792 1.19888 0.80402 1.00380 1.01206 1.20940 1.03481 0.86298 1.04659 0.90662 0.87708 0.89073 0.86946 0.80722 0.75162 0.91279 0.92072 0.89638 0.87670 0.88990 0.96201 0.97306 0.94110 0.95977 0.96863 0.89575 0.86076 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 9.56 71.23 0.68 0.20 16 2 C -0.20 -3.59 6.72 24.53 0.16 -3.42 16 3 S -0.01 -0.33 22.97 -56.49 -1.30 -1.63 16 4 C 0.46 16.09 8.27 129.87 1.07 17.16 16 5 O -0.53 -23.60 17.55 -4.74 -0.08 -23.68 16 6 N -0.51 -13.52 2.09 -647.51 -1.35 -14.87 16 7 C 0.08 1.88 5.75 85.64 0.49 2.37 16 8 C 0.50 15.40 7.28 87.66 0.64 16.04 16 9 O -0.56 -21.66 13.27 -3.02 -0.04 -21.70 16 10 N -0.69 -20.27 5.19 -416.31 -2.16 -22.43 16 11 C 0.17 5.62 0.82 5.07 0.00 5.62 16 12 C -0.14 -3.72 8.59 71.98 0.62 -3.10 16 13 C -0.12 -4.00 5.97 31.78 0.19 -3.81 16 14 C 0.18 8.68 5.37 86.73 0.47 9.15 16 15 N -0.62 -33.48 3.39 -691.55 -2.35 -35.83 16 16 C -0.25 -15.07 10.28 84.03 0.86 -14.21 16 17 H 0.06 3.68 7.83 -2.91 -0.02 3.65 16 18 C -0.05 -3.16 5.49 84.86 0.47 -2.70 16 19 N -0.94 -56.75 10.31 21.65 0.22 -56.52 16 20 Si 0.97 48.68 29.55 68.60 2.03 50.71 16 21 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 22 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 23 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 24 C 0.13 5.97 6.18 86.93 0.54 6.50 16 25 C 0.09 1.67 6.59 40.71 0.27 1.94 16 26 C -0.10 -0.82 9.46 71.23 0.67 -0.15 16 27 H 0.07 0.63 8.14 -2.38 -0.02 0.62 16 28 H 0.10 0.34 7.99 -2.39 -0.02 0.33 16 29 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.11 2.96 7.80 -2.39 -0.02 2.94 16 31 H 0.18 1.98 6.12 -2.39 -0.01 1.97 16 32 H 0.41 10.01 8.51 -92.71 -0.79 9.22 16 33 H 0.07 1.76 8.07 -2.39 -0.02 1.74 16 34 H 0.06 1.88 5.92 -2.39 -0.01 1.87 16 35 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.10 2.59 8.09 -2.39 -0.02 2.57 16 37 H 0.09 2.68 8.04 -2.39 -0.02 2.66 16 38 H 0.02 1.03 7.38 -2.39 -0.02 1.01 16 39 H 0.01 0.47 7.50 -2.39 -0.02 0.45 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.02 1.03 7.99 -2.39 -0.02 1.01 16 42 H 0.01 0.69 6.89 -2.38 -0.02 0.67 16 43 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.12 0.30 7.41 -2.39 -0.02 0.28 16 45 H 0.09 0.49 6.18 -2.39 -0.01 0.48 16 Total: -1.00 -88.08 374.56 2.34 -85.74 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.23 Total: 8.64 kcal Atomic # 6 Polarization: 24.45 SS G_CDS: 7.14 Total: 31.58 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -5.64 Total: -129.66 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.12 Total: -45.38 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -1.30 Total: -1.63 kcal Total: -88.08 2.34 -85.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671694943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.794 kcal (2) G-P(sol) polarization free energy of solvation -88.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds