Wall clock time and date at job start Tue Mar 31 2020 23:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47171 * 2 1 4 4 N 1.30947 * 122.90745 * 270.19153 * 3 2 1 5 5 C 1.29424 * 117.36458 * 180.30767 * 4 3 2 6 6 S 1.70952 * 110.39217 * 359.73251 * 5 4 3 7 7 C 1.35661 * 122.90458 * 90.00333 * 3 2 1 8 8 C 1.46686 * 126.12854 * 0.02562 * 7 3 2 9 9 O 1.21684 * 120.00084 * 359.71357 * 8 7 3 10 10 N 1.34777 * 120.00016 * 179.71586 * 8 7 3 11 11 C 1.46497 * 120.00181 * 184.93120 * 10 8 7 12 12 C 1.52998 * 109.49863 * 298.44600 * 11 10 8 13 13 O 1.42905 * 109.46892 * 305.53938 * 12 11 10 14 14 C 1.53043 * 109.49538 * 58.50700 * 11 10 8 15 15 C 1.53044 * 109.53996 * 58.62193 * 14 11 10 16 16 C 1.53195 * 109.33845 * 61.34536 * 15 14 11 17 17 N 1.46935 * 108.77370 * 305.41486 * 16 15 14 18 18 C 1.36938 * 120.60746 * 233.57875 * 17 16 15 19 19 H 1.08001 * 119.99940 * 28.84632 * 18 17 16 20 20 C 1.38808 * 119.99811 * 208.84555 * 18 17 16 21 21 N 1.31622 * 120.00603 * 16.93696 * 20 18 17 22 22 Si 1.86802 * 119.99661 * 196.93579 * 20 18 17 23 23 H 1.48500 * 109.47158 * 90.00146 * 22 20 18 24 24 H 1.48502 * 109.46862 * 210.00022 * 22 20 18 25 25 H 1.48499 * 109.47165 * 330.00152 * 22 20 18 26 26 C 1.46927 * 118.76226 * 53.55786 * 17 16 15 27 27 H 1.09000 * 109.47040 * 299.99678 * 1 2 3 28 28 H 1.09005 * 109.47206 * 59.99757 * 1 2 3 29 29 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46693 * 239.99986 * 2 1 3 31 31 H 1.08997 * 109.47416 * 120.00393 * 2 1 3 32 32 H 1.08001 * 124.80695 * 179.76903 * 5 4 3 33 33 H 0.97010 * 119.99819 * 4.92439 * 10 8 7 34 34 H 1.08997 * 109.46713 * 65.53392 * 12 11 10 35 35 H 1.08992 * 109.47195 * 185.54272 * 12 11 10 36 36 H 0.96701 * 114.00042 * 179.97438 * 13 12 11 37 37 H 1.08997 * 109.46374 * 298.60000 * 14 11 10 38 38 H 1.08997 * 109.44707 * 178.63125 * 14 11 10 39 39 H 1.08998 * 109.50138 * 181.31260 * 15 14 11 40 40 H 1.08998 * 109.49406 * 301.38386 * 15 14 11 41 41 H 1.08997 * 109.58631 * 65.17134 * 16 15 14 42 42 H 1.08999 * 109.58672 * 185.59798 * 16 15 14 43 43 H 0.96992 * 120.00613 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.59021 * 186.62685 * 26 17 16 45 45 H 1.09000 * 109.70609 * 66.26460 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2660 2.0927 -1.0994 5 6 2.7016 3.3050 -0.9744 6 16 2.8522 3.7165 0.6780 7 6 2.2780 2.1155 1.1390 8 6 2.1036 1.6205 2.5087 9 8 1.6986 0.4891 2.6998 10 7 2.3920 2.4188 3.5556 11 6 2.3218 1.8910 4.9204 12 6 0.8907 1.4408 5.2208 13 8 -0.0109 2.5208 4.9702 14 6 3.2715 0.6987 5.0565 15 6 4.6987 1.1406 4.7243 16 6 5.1377 2.2240 5.7144 17 7 4.1489 3.3108 5.6954 18 6 4.5396 4.6051 5.4781 19 1 5.4174 4.8117 4.8837 20 6 3.8074 5.6516 6.0217 21 7 2.9568 5.4216 6.9994 22 14 4.0294 7.3865 5.3656 23 1 3.0721 7.6219 4.2550 24 1 3.7746 8.3637 6.4543 25 1 5.4179 7.5529 4.8659 26 6 2.7335 2.9826 5.9133 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.9362 3.9637 -1.7975 33 1 2.6462 3.3428 3.4054 34 1 0.6335 0.5968 4.5807 35 1 0.8162 1.1403 6.2658 36 1 -0.9385 2.3061 5.1396 37 1 2.9660 -0.0894 4.3684 38 1 3.2368 0.3219 6.0787 39 1 5.3709 0.2858 4.7988 40 1 4.7291 1.5402 3.7107 41 1 5.1956 1.8008 6.7172 42 1 6.1135 2.6121 5.4225 43 1 2.4450 6.1528 7.3790 44 1 2.1233 3.8715 5.7527 45 1 2.5925 2.6218 6.9322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672486567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:59 Heat of formation + Delta-G solvation = -19.350357 kcal Electronic energy + Delta-G solvation = -29351.394326 eV Core-core repulsion = 25496.398317 eV Total energy + Delta-G solvation = -3854.996009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.43270 -39.50589 -37.31484 -35.91107 -33.86406 -33.27652 -32.65111 -30.80492 -29.95691 -29.06011 -26.00332 -25.47638 -25.09926 -23.23784 -22.38491 -22.00012 -20.51792 -19.09983 -18.90925 -18.03718 -17.01254 -16.78676 -16.50396 -15.41346 -15.28768 -15.07325 -14.52615 -14.33296 -14.12840 -14.05444 -13.91707 -13.63745 -13.42003 -13.12931 -13.06293 -12.48407 -12.37253 -12.34885 -11.94524 -11.86321 -11.57850 -11.19680 -11.18462 -10.98884 -10.80654 -10.76851 -10.50009 -10.24995 -10.02646 -9.95337 -9.80095 -9.69104 -9.57400 -9.44442 -9.02432 -8.84215 -8.55576 -8.42835 -6.74543 -5.86167 -3.30388 0.33293 1.27686 1.66625 2.54349 3.32607 3.40082 3.41410 3.45856 3.56511 4.14364 4.42747 4.64615 4.94237 5.01854 5.15033 5.27664 5.38968 5.44609 5.50221 5.55745 5.56306 5.67580 5.74236 5.79870 5.93120 6.00101 6.04294 6.06036 6.26099 6.28349 6.34416 6.38157 6.45009 6.47683 6.60586 6.77957 6.92431 7.01439 7.23679 7.55733 7.60800 7.74261 8.02648 8.07393 8.37598 8.58531 9.12666 9.75812 10.33590 11.21979 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011560 B = 0.005111 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.602331 B = 5476.532484 C = 6548.513021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.056 4.056 3 C 0.134 3.866 4 N -0.476 5.476 5 C 0.017 3.983 6 S 0.182 5.818 7 C -0.280 4.280 8 C 0.594 3.406 9 O -0.537 6.537 10 N -0.677 5.677 11 C 0.157 3.843 12 C 0.069 3.931 13 O -0.560 6.560 14 C -0.121 4.121 15 C -0.129 4.129 16 C 0.142 3.858 17 N -0.590 5.590 18 C -0.260 4.260 19 H 0.067 0.933 20 C 0.008 3.992 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.174 3.826 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.202 0.798 33 H 0.406 0.594 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.368 0.632 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.053 0.947 43 H 0.255 0.745 44 H 0.102 0.898 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.318 -7.472 -10.808 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 C -0.004 4.004 4 N -0.190 5.190 5 C -0.278 4.278 6 S 0.437 5.563 7 C -0.405 4.405 8 C 0.379 3.621 9 O -0.418 6.418 10 N -0.325 5.325 11 C 0.070 3.930 12 C -0.010 4.010 13 O -0.364 6.364 14 C -0.159 4.159 15 C -0.168 4.168 16 C 0.016 3.984 17 N -0.312 5.312 18 C -0.390 4.390 19 H 0.084 0.916 20 C -0.192 4.192 21 N -0.539 5.539 22 Si 0.727 3.273 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.048 3.952 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.124 0.876 32 H 0.219 0.781 33 H 0.242 0.758 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.213 0.787 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.120 0.880 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.804 -7.024 -10.709 13.111 hybrid contribution -0.545 0.479 -0.275 0.776 sum -3.349 -6.545 -10.984 13.218 Atomic orbital electron populations 1.21581 0.94156 1.01767 1.01745 1.20362 0.96509 0.88506 1.04210 1.20659 0.96546 0.98240 0.85002 1.66094 1.15192 1.06186 1.31490 1.28655 1.01912 0.96270 1.00968 1.84450 1.57471 1.12196 1.02168 1.25761 1.16261 0.98705 0.99748 1.16648 0.77874 0.85300 0.82253 1.90656 1.47391 1.18957 1.84767 1.45762 1.66984 1.14506 1.05274 1.21292 0.92102 0.96891 0.82746 1.22604 0.89947 0.89628 0.98866 1.86564 1.19321 1.39090 1.91390 1.21741 0.95269 0.97223 1.01672 1.21928 0.95378 0.98764 1.00734 1.20975 0.93116 0.89078 0.95201 1.44035 1.00697 1.02776 1.83718 1.19159 1.12197 0.81647 1.25984 0.91568 1.25070 1.00147 0.97955 0.95988 1.70001 1.28640 1.31408 1.23890 0.86371 0.78004 0.84644 0.78291 1.21200 1.21717 1.20353 1.21011 0.86174 0.95588 0.92454 0.92307 0.93200 0.92148 0.90855 0.87642 0.78132 0.75837 0.92096 0.93699 0.78705 0.91008 0.91782 0.93029 0.92639 0.96380 0.92803 0.93464 0.88040 0.94850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.89 37.16 0.37 -1.30 16 2 C -0.06 -0.76 5.74 -27.89 -0.16 -0.92 16 3 C 0.13 2.00 6.04 -83.89 -0.51 1.49 16 4 N -0.48 -6.68 10.50 -11.53 -0.12 -6.81 16 5 C 0.02 0.20 12.22 51.75 0.63 0.83 16 6 S 0.18 2.44 22.36 -107.50 -2.40 0.03 16 7 C -0.28 -4.43 6.48 -37.09 -0.24 -4.67 16 8 C 0.59 10.40 7.16 -12.85 -0.09 10.30 16 9 O -0.54 -9.67 10.58 5.20 0.06 -9.62 16 10 N -0.68 -12.50 3.93 -48.79 -0.19 -12.70 16 11 C 0.16 2.96 0.45 -131.70 -0.06 2.90 16 12 C 0.07 1.17 5.65 37.16 0.21 1.38 16 13 O -0.56 -9.68 13.08 -35.23 -0.46 -10.14 16 14 C -0.12 -2.11 4.45 -26.69 -0.12 -2.22 16 15 C -0.13 -2.27 5.93 -26.61 -0.16 -2.43 16 16 C 0.14 2.88 6.52 -3.70 -0.02 2.86 16 17 N -0.59 -13.80 2.90 -172.31 -0.50 -14.30 16 18 C -0.26 -6.68 9.57 -15.06 -0.14 -6.82 16 19 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 20 C 0.01 0.21 4.91 -17.43 -0.09 0.13 16 21 N -0.90 -24.90 11.25 55.49 0.62 -24.27 16 22 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.17 3.94 3.85 -3.71 -0.01 3.92 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.11 1.55 6.01 -51.93 -0.31 1.24 16 32 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.41 8.00 7.67 -40.82 -0.31 7.69 16 34 H 0.06 1.04 6.29 -51.93 -0.33 0.71 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.37 4.54 9.12 45.56 0.42 4.96 16 37 H 0.07 1.26 6.27 -51.93 -0.33 0.93 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 1.03 7.51 -51.93 -0.39 0.64 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.10 2.62 5.97 -51.93 -0.31 2.31 16 45 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -29.96 368.70 -8.62 -38.57 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.75 Total: 12.54 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -0.39 Total: 5.46 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.19 Total: -58.07 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.41 Total: -19.76 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.40 Total: 0.03 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.96 -8.62 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672486567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.223 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds