Wall clock time and date at job start Tue Mar 31 2020 23:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47171 * 2 1 4 4 N 1.30947 * 122.90745 * 270.19153 * 3 2 1 5 5 C 1.29424 * 117.36458 * 180.30767 * 4 3 2 6 6 S 1.70952 * 110.39217 * 359.73251 * 5 4 3 7 7 C 1.35661 * 122.90458 * 90.00333 * 3 2 1 8 8 C 1.46686 * 126.12854 * 0.02562 * 7 3 2 9 9 O 1.21684 * 120.00084 * 359.71357 * 8 7 3 10 10 N 1.34777 * 120.00016 * 179.71586 * 8 7 3 11 11 C 1.46497 * 120.00181 * 184.93120 * 10 8 7 12 12 C 1.52998 * 109.49863 * 298.44600 * 11 10 8 13 13 O 1.42905 * 109.46892 * 305.53938 * 12 11 10 14 14 C 1.53043 * 109.49538 * 58.50700 * 11 10 8 15 15 C 1.53044 * 109.53996 * 58.62193 * 14 11 10 16 16 C 1.53195 * 109.33845 * 61.34536 * 15 14 11 17 17 N 1.46935 * 108.77370 * 305.41486 * 16 15 14 18 18 C 1.36938 * 120.60746 * 233.57875 * 17 16 15 19 19 H 1.08001 * 119.99940 * 28.84632 * 18 17 16 20 20 C 1.38808 * 119.99811 * 208.84555 * 18 17 16 21 21 N 1.31622 * 120.00603 * 16.93696 * 20 18 17 22 22 Si 1.86802 * 119.99661 * 196.93579 * 20 18 17 23 23 H 1.48500 * 109.47158 * 90.00146 * 22 20 18 24 24 H 1.48502 * 109.46862 * 210.00022 * 22 20 18 25 25 H 1.48499 * 109.47165 * 330.00152 * 22 20 18 26 26 C 1.46927 * 118.76226 * 53.55786 * 17 16 15 27 27 H 1.09000 * 109.47040 * 299.99678 * 1 2 3 28 28 H 1.09005 * 109.47206 * 59.99757 * 1 2 3 29 29 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46693 * 239.99986 * 2 1 3 31 31 H 1.08997 * 109.47416 * 120.00393 * 2 1 3 32 32 H 1.08001 * 124.80695 * 179.76903 * 5 4 3 33 33 H 0.97010 * 119.99819 * 4.92439 * 10 8 7 34 34 H 1.08997 * 109.46713 * 65.53392 * 12 11 10 35 35 H 1.08992 * 109.47195 * 185.54272 * 12 11 10 36 36 H 0.96701 * 114.00042 * 179.97438 * 13 12 11 37 37 H 1.08997 * 109.46374 * 298.60000 * 14 11 10 38 38 H 1.08997 * 109.44707 * 178.63125 * 14 11 10 39 39 H 1.08998 * 109.50138 * 181.31260 * 15 14 11 40 40 H 1.08998 * 109.49406 * 301.38386 * 15 14 11 41 41 H 1.08997 * 109.58631 * 65.17134 * 16 15 14 42 42 H 1.08999 * 109.58672 * 185.59798 * 16 15 14 43 43 H 0.96992 * 120.00613 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.59021 * 186.62685 * 26 17 16 45 45 H 1.09000 * 109.70609 * 66.26460 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2660 2.0927 -1.0994 5 6 2.7016 3.3050 -0.9744 6 16 2.8522 3.7165 0.6780 7 6 2.2780 2.1155 1.1390 8 6 2.1036 1.6205 2.5087 9 8 1.6986 0.4891 2.6998 10 7 2.3920 2.4188 3.5556 11 6 2.3218 1.8910 4.9204 12 6 0.8907 1.4408 5.2208 13 8 -0.0109 2.5208 4.9702 14 6 3.2715 0.6987 5.0565 15 6 4.6987 1.1406 4.7243 16 6 5.1377 2.2240 5.7144 17 7 4.1489 3.3108 5.6954 18 6 4.5396 4.6051 5.4781 19 1 5.4174 4.8117 4.8837 20 6 3.8074 5.6516 6.0217 21 7 2.9568 5.4216 6.9994 22 14 4.0294 7.3865 5.3656 23 1 3.0721 7.6219 4.2550 24 1 3.7746 8.3637 6.4543 25 1 5.4179 7.5529 4.8659 26 6 2.7335 2.9826 5.9133 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.9362 3.9637 -1.7975 33 1 2.6462 3.3428 3.4054 34 1 0.6335 0.5968 4.5807 35 1 0.8162 1.1403 6.2658 36 1 -0.9385 2.3061 5.1396 37 1 2.9660 -0.0894 4.3684 38 1 3.2368 0.3219 6.0787 39 1 5.3709 0.2858 4.7988 40 1 4.7291 1.5402 3.7107 41 1 5.1956 1.8008 6.7172 42 1 6.1135 2.6121 5.4225 43 1 2.4450 6.1528 7.3790 44 1 2.1233 3.8715 5.7527 45 1 2.5925 2.6218 6.9322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672486567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:58 Heat of formation + Delta-G solvation = -40.572276 kcal Electronic energy + Delta-G solvation = -29352.314578 eV Core-core repulsion = 25496.398317 eV Total energy + Delta-G solvation = -3855.916261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70266 -40.76102 -38.77823 -37.36272 -35.44431 -34.40677 -34.23876 -32.31618 -31.65548 -30.28881 -27.32874 -27.06221 -26.63728 -24.27252 -24.02373 -23.35922 -22.06667 -20.40951 -20.29859 -19.15829 -18.77348 -18.18258 -17.85558 -16.86552 -16.63349 -16.42542 -16.03620 -15.83129 -15.55349 -15.25468 -15.09081 -14.96413 -14.80198 -14.67829 -14.40091 -14.12866 -13.97725 -13.50223 -13.37064 -13.09660 -12.91121 -12.88326 -12.76419 -12.53369 -12.22692 -12.21769 -11.97386 -11.85164 -11.69631 -11.48733 -11.27183 -11.11861 -10.82376 -10.57894 -10.52563 -10.40986 -9.96176 -9.78426 -8.66048 -7.85128 -5.31299 -0.73754 0.22444 0.62628 1.44155 1.48951 1.50922 1.58514 2.17746 2.20914 2.52848 3.16993 3.29476 3.33742 3.65352 3.76261 3.99126 4.08301 4.08878 4.22024 4.24066 4.35826 4.42251 4.48174 4.49475 4.59738 4.62009 4.79762 4.83903 4.91319 4.96509 5.00110 5.05091 5.09506 5.19660 5.25490 5.30541 5.36862 5.47340 5.62340 5.71011 5.73265 6.40719 6.51704 6.65637 6.92876 7.15503 7.20750 7.85526 8.39435 9.20851 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011560 B = 0.005111 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.602331 B = 5476.532484 C = 6548.513021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.057 4.057 3 C 0.139 3.861 4 N -0.494 5.494 5 C 0.047 3.953 6 S 0.175 5.825 7 C -0.315 4.315 8 C 0.596 3.404 9 O -0.547 6.547 10 N -0.682 5.682 11 C 0.161 3.839 12 C 0.075 3.925 13 O -0.580 6.580 14 C -0.115 4.115 15 C -0.117 4.117 16 C 0.140 3.860 17 N -0.603 5.603 18 C -0.260 4.260 19 H 0.068 0.932 20 C -0.040 4.040 21 N -0.928 5.928 22 Si 0.954 3.046 23 H -0.281 1.281 24 H -0.300 1.300 25 H -0.267 1.267 26 C 0.190 3.810 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.246 0.754 33 H 0.397 0.603 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.388 0.612 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.017 0.983 42 H 0.055 0.945 43 H 0.249 0.751 44 H 0.067 0.933 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 -7.994 -13.024 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.096 4.096 3 C 0.000 4.000 4 N -0.208 5.208 5 C -0.247 4.247 6 S 0.431 5.569 7 C -0.439 4.439 8 C 0.383 3.617 9 O -0.428 6.428 10 N -0.330 5.330 11 C 0.073 3.927 12 C -0.004 4.004 13 O -0.387 6.387 14 C -0.153 4.153 15 C -0.156 4.156 16 C 0.015 3.985 17 N -0.326 5.326 18 C -0.390 4.390 19 H 0.085 0.915 20 C -0.237 4.237 21 N -0.573 5.573 22 Si 0.783 3.217 23 H -0.208 1.208 24 H -0.227 1.227 25 H -0.192 1.192 26 C 0.064 3.936 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.262 0.738 33 H 0.232 0.768 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.237 0.763 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -2.413 -7.577 -12.940 15.188 hybrid contribution -0.643 0.638 0.347 0.970 sum -3.056 -6.939 -12.593 14.699 Atomic orbital electron populations 1.21515 0.93341 1.02746 1.00870 1.20389 0.97124 0.87948 1.04188 1.20920 0.95334 0.98713 0.85026 1.66179 1.16626 1.07124 1.30892 1.29430 0.98536 0.95693 1.01083 1.84488 1.57656 1.11192 1.03592 1.25581 1.19051 1.00294 0.99002 1.16784 0.77246 0.85012 0.82691 1.90635 1.47797 1.19236 1.85160 1.45714 1.67709 1.14195 1.05358 1.21122 0.93512 0.95846 0.82219 1.22525 0.89024 0.89433 0.99460 1.86518 1.21012 1.39618 1.91544 1.21707 0.94771 0.96585 1.02266 1.21797 0.95990 0.98644 0.99125 1.21092 0.92560 0.88955 0.95934 1.44227 1.01633 1.02956 1.83766 1.19409 1.11799 0.82806 1.25015 0.91481 1.25711 1.00396 1.01147 0.96397 1.70152 1.29903 1.31877 1.25414 0.85460 0.78373 0.80518 0.77350 1.20800 1.22697 1.19187 1.20647 0.85487 0.95173 0.92334 0.94343 0.92751 0.90296 0.89405 0.89005 0.73779 0.76802 0.91684 0.92744 0.76347 0.90532 0.90961 0.90253 0.93575 0.96462 0.92684 0.94208 0.91500 0.97221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.89 71.98 0.71 -2.24 16 2 C -0.06 -1.45 5.74 29.85 0.17 -1.28 16 3 C 0.14 3.94 6.04 42.09 0.25 4.20 16 4 N -0.49 -12.66 10.50 -190.41 -2.00 -14.66 16 5 C 0.05 0.96 12.22 130.60 1.60 2.56 16 6 S 0.17 4.45 22.36 -56.49 -1.26 3.19 16 7 C -0.32 -9.71 6.48 23.88 0.15 -9.56 16 8 C 0.60 20.69 7.16 86.45 0.62 21.31 16 9 O -0.55 -19.43 10.58 -4.30 -0.05 -19.47 16 10 N -0.68 -25.31 3.93 -426.48 -1.68 -26.99 16 11 C 0.16 6.06 0.45 3.68 0.00 6.06 16 12 C 0.07 2.54 5.65 71.98 0.41 2.95 16 13 O -0.58 -20.18 13.08 -148.98 -1.95 -22.13 16 14 C -0.11 -3.90 4.45 30.62 0.14 -3.76 16 15 C -0.12 -3.95 5.93 30.67 0.18 -3.77 16 16 C 0.14 5.60 6.52 86.36 0.56 6.16 16 17 N -0.60 -28.55 2.90 -699.07 -2.03 -30.58 16 18 C -0.26 -13.46 9.57 84.03 0.80 -12.66 16 19 H 0.07 3.40 7.89 -2.91 -0.02 3.38 16 20 C -0.04 -2.14 4.91 84.86 0.42 -1.72 16 21 N -0.93 -53.07 11.25 21.65 0.24 -52.83 16 22 Si 0.95 42.93 29.59 68.60 2.03 44.96 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 26 C 0.19 8.80 3.85 86.36 0.33 9.14 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.09 2.62 6.01 -2.39 -0.01 2.60 16 32 H 0.25 2.57 8.06 -2.91 -0.02 2.54 16 33 H 0.40 15.95 7.67 -92.70 -0.71 15.24 16 34 H 0.07 2.17 6.29 -2.39 -0.02 2.15 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.39 9.48 9.12 -74.06 -0.68 8.80 16 37 H 0.08 2.57 6.27 -2.39 -0.01 2.56 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 1.66 7.51 -2.39 -0.02 1.64 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 43 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.07 3.59 5.97 -2.39 -0.01 3.57 16 45 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -65.11 368.70 -0.69 -65.80 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: -0.35 Total: 35.35 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 6.35 Total: 17.37 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -5.46 Total: -125.05 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.99 Total: -41.61 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.26 Total: 3.19 kcal Total: -65.11 -0.69 -65.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672486567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.227 kcal (2) G-P(sol) polarization free energy of solvation -65.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds