Wall clock time and date at job start Tue Mar 31 2020 23:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47119 * 2 1 4 4 N 1.29424 * 124.80883 * 90.02637 * 3 2 1 5 5 C 1.30941 * 117.36851 * 180.02562 * 4 3 2 6 6 C 1.35664 * 114.18887 * 359.97438 * 5 4 3 7 7 C 1.46681 * 126.13140 * 180.02562 * 6 5 4 8 8 O 1.21688 * 119.99778 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00308 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00027 * 174.94992 * 9 7 6 11 11 C 1.53004 * 109.49738 * 302.36510 * 10 9 7 12 12 O 1.42895 * 109.47299 * 302.30414 * 11 10 9 13 13 C 1.53038 * 109.49927 * 62.43415 * 10 9 7 14 14 C 1.53042 * 109.54025 * 58.58366 * 13 10 9 15 15 C 1.53197 * 109.31164 * 61.36440 * 14 13 10 16 16 N 1.46932 * 108.77538 * 305.36713 * 15 14 13 17 17 C 1.36936 * 120.63045 * 233.60620 * 16 15 14 18 18 H 1.08001 * 119.99937 * 152.47518 * 17 16 15 19 19 C 1.38817 * 119.99831 * 332.47665 * 17 16 15 20 20 N 1.31616 * 119.99647 * 160.37144 * 19 17 16 21 21 Si 1.86797 * 119.99892 * 340.36668 * 19 17 16 22 22 H 1.48508 * 109.47024 * 95.09149 * 21 19 17 23 23 H 1.48501 * 109.47142 * 215.08294 * 21 19 17 24 24 H 1.48497 * 109.47592 * 335.08848 * 21 19 17 25 25 C 1.46925 * 118.73616 * 53.60775 * 16 15 14 26 26 S 1.70956 * 124.79911 * 269.71903 * 3 2 1 27 27 H 1.08999 * 109.46464 * 60.00290 * 1 2 3 28 28 H 1.09004 * 109.47083 * 300.00731 * 1 2 3 29 29 H 1.08991 * 109.46838 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46962 * 119.99670 * 2 1 3 31 31 H 1.08997 * 109.47157 * 239.99700 * 2 1 3 32 32 H 1.08001 * 122.90945 * 179.97438 * 5 4 3 33 33 H 0.96999 * 119.99294 * 354.94654 * 9 7 6 34 34 H 1.09005 * 109.46499 * 62.30378 * 11 10 9 35 35 H 1.08995 * 109.46794 * 182.30213 * 11 10 9 36 36 H 0.96701 * 114.00191 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.45688 * 178.60580 * 13 10 9 38 38 H 1.09001 * 109.46140 * 298.56285 * 13 10 9 39 39 H 1.08993 * 109.49754 * 181.31674 * 14 13 10 40 40 H 1.08994 * 109.49622 * 301.41788 * 14 13 10 41 41 H 1.09001 * 109.58723 * 65.15197 * 15 14 13 42 42 H 1.08991 * 109.58645 * 185.57612 * 15 14 13 43 43 H 0.96999 * 120.00155 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.58402 * 186.60592 * 25 16 15 45 45 H 1.08996 * 109.59040 * 66.18279 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2791 2.1172 1.0627 5 6 2.7113 3.3416 0.8931 6 6 2.8412 3.7103 -0.4060 7 6 3.3022 5.0149 -0.8928 8 8 3.6100 5.8858 -0.1006 9 7 3.3840 5.2495 -2.2175 10 6 3.7376 6.5851 -2.7045 11 6 2.7351 7.6073 -2.1649 12 8 1.4150 7.2393 -2.5695 13 6 5.1450 6.9476 -2.2250 14 6 6.1438 5.9070 -2.7363 15 6 6.1392 5.9101 -4.2683 16 7 4.7618 5.7061 -4.7374 17 6 4.4680 4.7056 -5.6250 18 1 3.4819 4.2652 -5.6354 19 6 5.4377 4.2574 -6.5115 20 7 5.3122 3.0786 -7.0832 21 14 6.9205 5.3275 -6.8930 22 1 8.0520 4.9371 -6.0140 23 1 7.3114 5.1435 -8.3138 24 1 6.5773 6.7524 -6.6546 25 6 3.7057 6.5960 -4.2360 26 16 2.3641 2.3384 -1.4038 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 2.9444 4.0008 1.7162 33 1 3.2088 4.5338 -2.8484 34 1 2.7887 7.6290 -1.0764 35 1 2.9744 8.5944 -2.5603 36 1 0.7263 7.8446 -2.2623 37 1 5.4170 7.9311 -2.6083 38 1 5.1643 6.9647 -1.1353 39 1 7.1423 6.1528 -2.3751 40 1 5.8581 4.9196 -2.3737 41 1 6.5113 6.8676 -4.6329 42 1 6.7740 5.1046 -4.6372 43 1 5.9900 2.7652 -7.7024 44 1 2.7348 6.2429 -4.5837 45 1 3.8793 7.6093 -4.5980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672504252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:04 Heat of formation + Delta-G solvation = -16.692537 kcal Electronic energy + Delta-G solvation = -28567.333651 eV Core-core repulsion = 24712.452894 eV Total energy + Delta-G solvation = -3854.880757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.40556 -39.60680 -37.59671 -36.24374 -34.16593 -34.02511 -32.49325 -30.94962 -30.72079 -29.30694 -26.10936 -25.83168 -25.23652 -23.24731 -22.31556 -22.04446 -21.09932 -19.40403 -19.11328 -18.16469 -17.10976 -16.85176 -16.78932 -15.60280 -15.40769 -15.36311 -14.96627 -14.67836 -14.55768 -14.01669 -13.88690 -13.76379 -13.66814 -13.43935 -13.31563 -12.93750 -12.47540 -12.33714 -12.25349 -11.95660 -11.85597 -11.56611 -11.46555 -11.45237 -11.39121 -10.84459 -10.71943 -10.29187 -10.07721 -10.02434 -9.80404 -9.71068 -9.50710 -9.45991 -9.37881 -8.93272 -8.67205 -8.64239 -7.05640 -6.00926 -3.38785 0.27312 1.19554 1.62950 2.49656 3.29031 3.35717 3.37488 3.45393 3.47319 3.96125 4.35603 4.47939 4.71620 4.84667 4.89890 4.95754 4.98255 5.22740 5.25522 5.33624 5.39575 5.43187 5.46729 5.57279 5.57451 5.67961 5.70276 5.78972 5.90922 6.00775 6.08002 6.12047 6.17797 6.26532 6.38584 6.53343 6.58189 6.67771 6.81800 6.92935 7.56897 7.75639 7.84575 7.87945 8.24655 8.40217 8.85528 9.64915 10.01447 11.14415 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.004356 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.593343 B = 6425.900701 C = 7762.912021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C 0.046 3.954 4 N -0.481 5.481 5 C 0.110 3.890 6 C -0.288 4.288 7 C 0.598 3.402 8 O -0.541 6.541 9 N -0.682 5.682 10 C 0.166 3.834 11 C 0.065 3.935 12 O -0.564 6.564 13 C -0.122 4.122 14 C -0.130 4.130 15 C 0.123 3.877 16 N -0.605 5.605 17 C -0.265 4.265 18 H 0.087 0.913 19 C 0.028 3.972 20 N -0.906 5.906 21 Si 0.884 3.116 22 H -0.290 1.290 23 H -0.304 1.304 24 H -0.269 1.269 25 C 0.150 3.850 26 S 0.196 5.804 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.184 0.816 33 H 0.408 0.592 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.372 0.628 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.072 0.928 43 H 0.263 0.737 44 H 0.077 0.923 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.728 0.434 13.304 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.228 4.228 4 N -0.196 5.196 5 C -0.048 4.048 6 C -0.413 4.413 7 C 0.383 3.617 8 O -0.422 6.422 9 N -0.332 5.332 10 C 0.078 3.922 11 C -0.014 4.014 12 O -0.368 6.368 13 C -0.160 4.160 14 C -0.169 4.169 15 C -0.002 4.002 16 N -0.328 5.328 17 C -0.392 4.392 18 H 0.104 0.896 19 C -0.172 4.172 20 N -0.548 5.548 21 Si 0.715 3.285 22 H -0.218 1.218 23 H -0.233 1.233 24 H -0.194 1.194 25 C 0.024 3.976 26 S 0.453 5.547 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.201 0.799 33 H 0.244 0.756 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.218 0.782 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.287 -0.049 12.778 14.710 hybrid contribution 0.865 1.292 0.374 1.599 sum -6.423 1.243 13.152 14.689 Atomic orbital electron populations 1.21781 0.93288 1.02688 1.02820 1.20289 0.96883 0.87351 1.04607 1.27521 1.01485 1.02097 0.91710 1.66194 1.15835 1.06120 1.31422 1.22077 0.96018 0.91309 0.95392 1.25926 1.16653 1.00794 0.97888 1.16676 0.77448 0.84713 0.82859 1.90715 1.50751 1.45058 1.55666 1.45734 1.68548 1.13297 1.05628 1.21003 0.92841 0.80964 0.97405 1.22619 0.82610 0.96525 0.99638 1.86516 1.16221 1.54861 1.79246 1.21790 0.93245 0.99073 1.01940 1.21926 0.97621 0.99194 0.98137 1.21393 0.87562 0.99187 0.92039 1.44385 1.02435 1.35518 1.50496 1.18878 1.00465 1.09311 1.10592 0.89579 1.25249 0.98195 0.96624 0.97110 1.69811 1.35841 1.17081 1.32103 0.86942 0.83108 0.82239 0.76256 1.21764 1.23250 1.19424 1.21124 0.93838 0.94484 0.88179 1.84437 1.56606 1.03546 1.10068 0.92133 0.91966 0.91240 0.88632 0.89209 0.79867 0.75580 0.91681 0.93196 0.78222 0.91678 0.90318 0.92589 0.91944 0.95486 0.91041 0.92732 0.90442 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.90 37.16 0.37 -0.76 16 2 C -0.05 -0.45 6.51 -27.88 -0.18 -0.63 16 3 C 0.05 0.57 6.64 -13.29 -0.09 0.48 16 4 N -0.48 -6.66 10.51 -11.50 -0.12 -6.78 16 5 C 0.11 1.57 11.09 -18.85 -0.21 1.36 16 6 C -0.29 -4.40 6.48 -37.10 -0.24 -4.64 16 7 C 0.60 10.12 7.20 -12.85 -0.09 10.03 16 8 O -0.54 -9.81 13.14 5.20 0.07 -9.74 16 9 N -0.68 -11.76 4.00 -48.79 -0.20 -11.96 16 10 C 0.17 2.79 0.45 -131.70 -0.06 2.73 16 11 C 0.07 0.94 5.66 37.16 0.21 1.16 16 12 O -0.56 -7.92 13.02 -35.23 -0.46 -8.38 16 13 C -0.12 -2.02 4.51 -26.69 -0.12 -2.14 16 14 C -0.13 -2.36 5.93 -26.61 -0.16 -2.52 16 15 C 0.12 2.62 4.18 -3.70 -0.02 2.61 16 16 N -0.60 -13.58 2.64 -172.31 -0.46 -14.03 16 17 C -0.26 -6.96 10.04 -15.06 -0.15 -7.11 16 18 H 0.09 2.40 8.06 -52.49 -0.42 1.98 16 19 C 0.03 0.77 5.25 -17.43 -0.09 0.67 16 20 N -0.91 -26.69 13.97 55.49 0.78 -25.92 16 21 Si 0.88 21.86 24.34 -169.99 -4.14 17.72 16 22 H -0.29 -7.00 6.72 56.52 0.38 -6.63 16 23 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 24 H -0.27 -6.52 6.40 56.52 0.36 -6.16 16 25 C 0.15 2.87 5.04 -3.71 -0.02 2.85 16 26 S 0.20 2.65 22.32 -107.50 -2.40 0.25 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.18 2.39 8.06 -52.49 -0.42 1.96 16 33 H 0.41 7.46 7.63 -40.82 -0.31 7.15 16 34 H 0.07 0.99 6.24 -51.93 -0.32 0.67 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.37 3.45 9.12 45.56 0.42 3.87 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.33 6.22 -51.93 -0.32 1.01 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.22 7.53 -51.93 -0.39 0.82 16 41 H 0.03 0.57 6.94 -51.93 -0.36 0.21 16 42 H 0.07 1.67 4.50 -51.93 -0.23 1.44 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -31.65 366.62 -8.02 -39.67 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.78 Total: 9.54 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -0.85 Total: 4.10 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.00 Total: -58.69 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.39 Total: -18.12 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.40 Total: 0.25 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.65 -8.02 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672504252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.979 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds