Wall clock time and date at job start Tue Mar 31 2020 22:37:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 N 1.30257 * 125.62145 * 2 1
4 4 C 1.34478 * 108.70572 * 180.02562 * 3 2 1
5 5 C 1.34333 * 107.66730 * 0.02562 * 4 3 2
6 6 C 1.50695 * 126.44420 * 179.97438 * 5 4 3
7 7 N 1.46896 * 109.47052 * 89.99856 * 6 5 4
8 8 C 1.46901 * 110.99977 * 180.02562 * 7 6 5
9 9 H 1.09003 * 110.88653 * 328.88134 * 8 7 6
10 10 C 1.55132 * 110.90634 * 92.97451 * 8 7 6
11 11 N 1.47429 * 104.72037 * 155.27631 * 10 8 7
12 12 C 1.34776 * 125.64380 * 155.81724 * 11 10 8
13 13 O 1.21280 * 120.00458 * 359.71547 * 12 11 10
14 14 C 1.50702 * 119.99564 * 179.71782 * 12 11 10
15 15 S 1.81008 * 109.46925 * 180.02562 * 14 12 11
16 16 C 1.76202 * 99.99767 * 179.97438 * 15 14 12
17 17 H 1.07996 * 120.00286 * 0.02562 * 16 15 14
18 18 C 1.38802 * 119.99642 * 180.02562 * 16 15 14
19 19 N 1.31625 * 120.00322 * 359.97438 * 18 16 15
20 20 Si 1.86798 * 119.99881 * 180.02562 * 18 16 15
21 21 H 1.48506 * 109.47297 * 359.97438 * 20 18 16
22 22 H 1.48503 * 109.47261 * 239.99700 * 20 18 16
23 23 H 1.48500 * 109.47454 * 119.99693 * 20 18 16
24 24 C 1.47021 * 108.70411 * 335.55463 * 11 10 8
25 25 C 1.54323 * 107.27097 * 1.28716 * 24 11 10
26 26 H 1.08995 * 110.72128 * 140.73640 * 25 24 11
27 27 C 1.53004 * 110.71879 * 263.83146 * 25 24 11
28 28 O 1.33973 * 125.62236 * 180.34356 * 2 1 3
29 29 H 1.08999 * 109.47516 * 89.97257 * 1 2 3
30 30 H 1.09008 * 109.47072 * 209.97421 * 1 2 3
31 31 H 1.09007 * 109.47212 * 329.97113 * 1 2 3
32 32 H 1.07997 * 126.16506 * 180.02562 * 4 3 2
33 33 H 1.09002 * 109.46899 * 329.99800 * 6 5 4
34 34 H 1.08998 * 109.47213 * 210.00030 * 6 5 4
35 35 H 1.00902 * 111.00294 * 303.95310 * 7 6 5
36 36 H 1.08997 * 110.49741 * 36.43833 * 10 8 7
37 37 H 1.09001 * 110.34145 * 274.03734 * 10 8 7
38 38 H 1.08998 * 109.47573 * 60.00437 * 14 12 11
39 39 H 1.09000 * 109.46955 * 299.99406 * 14 12 11
40 40 H 0.97004 * 120.00251 * 0.02562 * 19 18 16
41 41 H 1.09002 * 109.88117 * 120.70750 * 24 11 10
42 42 H 1.09003 * 109.87862 * 241.71347 * 24 11 10
43 43 H 1.08998 * 109.46970 * 58.54636 * 27 25 24
44 44 H 1.08997 * 109.47117 * 178.54420 * 27 25 24
45 45 H 1.08996 * 109.46800 * 298.54770 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2656 1.0588 0.0000
4 6 3.5522 0.6676 -0.0006
5 6 3.5698 -0.6757 -0.0015
6 6 4.7937 -1.5549 -0.0029
7 7 5.1923 -1.8415 1.3816
8 6 6.3853 -2.6977 1.4194
9 1 6.4124 -3.3647 0.5577
10 6 7.6772 -1.8436 1.5092
11 7 8.6725 -2.7342 2.1333
12 6 10.0102 -2.6267 2.0086
13 8 10.4870 -1.7406 1.3316
14 6 10.9136 -3.6077 2.7105
15 16 12.6405 -3.2016 2.3510
16 6 13.4503 -4.4682 3.2700
17 1 12.8683 -5.1883 3.8259
18 6 14.8364 -4.5405 3.2794
19 7 15.5459 -3.6632 2.6014
20 14 15.6951 -5.8837 4.2530
21 1 14.6797 -6.7364 4.9218
22 1 16.5753 -5.2668 5.2776
23 1 16.5128 -6.7155 3.3340
24 6 7.9645 -3.7553 2.9192
25 6 6.4524 -3.4999 2.7458
26 1 5.9099 -4.4412 2.6583
27 6 5.9069 -2.6690 3.9090
28 8 2.2872 -1.0890 -0.0065
29 1 -0.3634 0.0005 -1.0276
30 1 -0.3633 -0.8903 0.5135
31 1 -0.3634 0.8898 0.5143
32 1 4.4156 1.3163 -0.0003
33 1 5.6076 -1.0437 -0.5170
34 1 4.5692 -2.4893 -0.5172
35 1 5.3436 -0.9881 1.8983
36 1 7.5111 -0.9648 2.1322
37 1 8.0054 -1.5470 0.5130
38 1 10.6967 -4.6167 2.3597
39 1 10.7441 -3.5525 3.7859
40 1 15.1000 -2.9658 2.0955
41 1 8.2174 -4.7490 2.5496
42 1 8.2390 -3.6700 3.9706
43 1 6.4418 -1.7207 3.9604
44 1 4.8450 -2.4791 3.7532
45 1 6.0453 -3.2153 4.8419
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001673849777.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:37:51
Heat of formation + Delta-G solvation = -41.149931 kcal
Electronic energy + Delta-G solvation = -26169.225918 eV
Core-core repulsion = 22313.284608 eV
Total energy + Delta-G solvation = -3855.941310 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-44.33063 -41.38156 -39.33972 -36.55344 -35.78347 -34.76737 -33.83514 -32.71613
-31.56023 -30.06623 -28.06922 -27.55214 -27.04821 -25.51496 -24.00702 -23.17709
-22.03241 -20.98275 -20.82032 -20.11331 -18.46103 -18.06922 -17.85762 -17.41920
-17.13897 -16.63957 -16.05040 -15.90982 -15.69973 -15.57639 -15.26434 -14.97512
-14.64407 -14.61851 -14.29369 -14.14312 -14.08023 -13.90158 -13.74702 -13.56350
-13.46181 -13.38540 -13.16266 -12.99335 -12.76974 -12.32694 -12.18226 -11.93412
-11.86577 -11.66708 -11.59324 -11.53039 -11.13025 -11.10787 -10.34983 -9.91800
-9.79526 -9.50639 -8.94453 -8.90380 -6.30223 0.37678 1.11371 1.41556
1.50692 1.61010 1.61492 1.67591 1.77712 1.94322 2.31805 2.96173
3.01007 3.08689 3.17400 3.36090 3.50210 3.71331 3.82442 3.87932
4.00644 4.05992 4.10851 4.14330 4.19102 4.29362 4.39519 4.50970
4.62873 4.63475 4.64538 4.66446 4.69111 4.72712 4.88830 5.02504
5.03362 5.05478 5.21320 5.27208 5.36605 5.47229 5.63218 5.75103
6.12980 6.13617 6.25202 6.70899 6.96610 7.04546 8.49064
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.034482 B = 0.001798 C = 0.001739
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 811.832231 B =15567.758135 C =16099.552789
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 C 0.187 3.813
3 N -0.521 5.521
4 C -0.048 4.048
5 C -0.044 4.044
6 C 0.143 3.857
7 N -0.663 5.663
8 C 0.095 3.905
9 H 0.108 0.892
10 C 0.077 3.923
11 N -0.610 5.610
12 C 0.545 3.455
13 O -0.568 6.568
14 C -0.100 4.100
15 S -0.196 6.196
16 C -0.613 4.613
17 H 0.075 0.925
18 C -0.018 4.018
19 N -0.913 5.913
20 Si 1.142 2.858
21 H -0.262 1.262
22 H -0.275 1.275
23 H -0.274 1.274
24 C 0.092 3.908
25 C -0.078 4.078
26 H 0.115 0.885
27 C -0.136 4.136
28 O -0.205 6.205
29 H 0.109 0.891
30 H 0.106 0.894
31 H 0.108 0.892
32 H 0.195 0.805
33 H 0.082 0.918
34 H 0.103 0.897
35 H 0.351 0.649
36 H 0.071 0.929
37 H 0.064 0.936
38 H 0.109 0.891
39 H 0.107 0.893
40 H 0.261 0.739
41 H 0.082 0.918
42 H 0.077 0.923
43 H 0.041 0.959
44 H 0.074 0.926
45 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -33.774 0.528 -1.516 33.813
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.020 4.020
3 N -0.251 5.251
4 C -0.187 4.187
5 C -0.097 4.097
6 C 0.014 3.986
7 N -0.294 5.294
8 C -0.016 4.016
9 H 0.126 0.874
10 C -0.047 4.047
11 N -0.345 5.345
12 C 0.333 3.667
13 O -0.447 6.447
14 C -0.251 4.251
15 S 0.031 5.969
16 C -0.760 4.760
17 H 0.094 0.906
18 C -0.222 4.222
19 N -0.549 5.549
20 Si 0.960 3.040
21 H -0.186 1.186
22 H -0.200 1.200
23 H -0.199 1.199
24 C -0.030 4.030
25 C -0.097 4.097
26 H 0.133 0.867
27 C -0.193 4.193
28 O -0.092 6.092
29 H 0.127 0.873
30 H 0.125 0.875
31 H 0.127 0.873
32 H 0.212 0.788
33 H 0.100 0.900
34 H 0.121 0.879
35 H 0.172 0.828
36 H 0.089 0.911
37 H 0.083 0.917
38 H 0.128 0.872
39 H 0.125 0.875
40 H 0.072 0.928
41 H 0.101 0.899
42 H 0.096 0.904
43 H 0.060 0.940
44 H 0.093 0.907
45 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -32.272 1.301 -2.069 32.364
hybrid contribution -0.457 0.114 -0.060 0.475
sum -32.729 1.415 -2.129 32.828
Atomic orbital electron populations
1.20528 0.78464 1.06414 1.06085 1.27247 0.97992 0.78146 0.98609
1.70469 1.02903 1.31488 1.20249 1.23433 0.95446 0.93673 1.06105
1.23443 0.83911 0.94922 1.07417 1.20405 0.88588 0.98580 0.91025
1.60568 1.34104 1.22517 1.12254 1.22763 0.84866 0.94284 0.99726
0.87387 1.23175 0.89246 0.94075 0.98248 1.48234 1.03410 1.32311
1.50515 1.19719 0.81879 0.84586 0.80480 1.90690 1.75205 1.36728
1.42040 1.23150 0.95960 1.01936 1.04081 1.85063 0.99312 1.44521
1.68016 1.24076 0.97094 1.17268 1.37599 0.90647 1.27849 0.94599
1.02414 0.97288 1.70862 1.39137 1.15816 1.29039 0.82648 0.74931
0.71783 0.74655 1.18628 1.20003 1.19946 1.22550 0.92604 0.91583
0.96294 1.22182 0.92204 1.00759 0.94595 0.86739 1.21670 1.01833
0.99042 0.96776 1.84410 1.17000 1.38105 1.69734 0.87314 0.87542
0.87308 0.78849 0.90019 0.87864 0.82833 0.91060 0.91725 0.87234
0.87469 0.92839 0.89940 0.90434 0.93966 0.90732 0.91920
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.35 10.51 71.23 0.75 0.40 16
2 C 0.19 2.99 8.34 88.34 0.74 3.73 16
3 N -0.52 -10.52 11.29 -303.83 -3.43 -13.95 16
4 C -0.05 -0.83 11.80 83.39 0.98 0.15 16
5 C -0.04 -0.68 6.90 24.79 0.17 -0.51 16
6 C 0.14 1.59 6.10 85.56 0.52 2.11 16
7 N -0.66 -7.55 5.32 -488.02 -2.60 -10.15 16
8 C 0.09 1.22 3.19 46.38 0.15 1.36 16
9 H 0.11 1.28 7.83 -2.39 -0.02 1.26 16
10 C 0.08 1.56 6.18 86.93 0.54 2.10 16
11 N -0.61 -15.89 3.32 -811.33 -2.70 -18.59 16
12 C 0.55 20.65 7.87 87.66 0.69 21.33 16
13 O -0.57 -26.73 16.12 -3.03 -0.05 -26.78 16
14 C -0.10 -4.04 5.35 71.24 0.38 -3.66 16
15 S -0.20 -10.88 19.60 -56.49 -1.11 -11.99 16
16 C -0.61 -35.42 9.50 67.95 0.65 -34.78 16
17 H 0.08 4.09 7.80 -2.91 -0.02 4.07 16
18 C -0.02 -1.07 5.49 84.86 0.47 -0.60 16
19 N -0.91 -58.11 13.67 21.65 0.30 -57.82 16
20 Si 1.14 49.31 29.92 68.60 2.05 51.36 16
21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16
22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16
23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16
24 C 0.09 1.63 6.06 86.73 0.53 2.15 16
25 C -0.08 -0.95 3.56 -9.60 -0.03 -0.98 16
26 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16
27 C -0.14 -1.63 8.27 71.98 0.60 -1.04 16
28 O -0.21 -3.59 10.78 -3.80 -0.04 -3.63 16
29 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16
30 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16
31 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16
32 H 0.19 2.58 8.06 -2.91 -0.02 2.55 16
33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16
34 H 0.10 1.02 8.09 -2.39 -0.02 1.01 16
35 H 0.35 4.04 7.81 -89.69 -0.70 3.34 16
36 H 0.07 1.40 7.31 -2.39 -0.02 1.38 16
37 H 0.06 1.50 8.03 -2.39 -0.02 1.48 16
38 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16
39 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16
40 H 0.26 17.28 7.13 -92.70 -0.66 16.62 16
41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
42 H 0.08 1.36 7.85 -2.39 -0.02 1.34 16
43 H 0.04 0.60 7.42 -2.39 -0.02 0.58 16
44 H 0.07 0.87 7.65 -2.39 -0.02 0.85 16
45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
Total: -1.00 -83.26 388.70 -0.05 -83.30
By element:
Atomic # 1 Polarization: 16.07 SS G_CDS: 0.41 Total: 16.48 kcal
Atomic # 6 Polarization: -15.35 SS G_CDS: 7.12 Total: -8.23 kcal
Atomic # 7 Polarization: -92.08 SS G_CDS: -8.43 Total: -100.51 kcal
Atomic # 8 Polarization: -30.32 SS G_CDS: -0.09 Total: -30.41 kcal
Atomic # 14 Polarization: 49.31 SS G_CDS: 2.05 Total: 51.36 kcal
Atomic # 16 Polarization: -10.88 SS G_CDS: -1.11 Total: -11.99 kcal
Total: -83.26 -0.05 -83.30 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001673849777.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.152 kcal
(2) G-P(sol) polarization free energy of solvation -83.255 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.104 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.302 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.150 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds