Wall clock time and date at job start Tue Mar 31 2020 22:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30253 * 125.62014 * 2 1 4 4 C 1.34477 * 108.69963 * 179.77280 * 3 2 1 5 5 C 1.34326 * 107.67188 * 0.39148 * 4 3 2 6 6 C 1.50697 * 126.44765 * 179.87607 * 5 4 3 7 7 N 1.46902 * 109.47169 * 89.70888 * 6 5 4 8 8 C 1.47953 * 111.00106 * 190.00237 * 7 6 5 9 9 C 1.53938 * 86.18256 * 222.42077 * 8 7 6 10 10 C 1.53002 * 113.73715 * 138.08049 * 9 8 7 11 11 H 1.08994 * 109.46352 * 305.00350 * 10 9 8 12 12 C 1.53001 * 109.46833 * 185.00527 * 10 9 8 13 13 N 1.46491 * 109.47054 * 65.00722 * 10 9 8 14 14 C 1.34779 * 120.00100 * 205.00398 * 13 10 9 15 15 O 1.21282 * 119.99579 * 359.97438 * 14 13 10 16 16 C 1.50700 * 120.00413 * 180.02562 * 14 13 10 17 17 S 1.80993 * 109.47114 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99933 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99962 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99678 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00566 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99572 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47171 * 90.00062 * 22 20 18 24 24 H 1.48500 * 109.47239 * 210.00334 * 22 20 18 25 25 H 1.48502 * 109.47426 * 329.99957 * 22 20 18 26 26 C 1.48188 * 111.06755 * 90.56721 * 7 6 5 27 27 O 1.33964 * 125.61791 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47134 * 269.98165 * 1 2 3 29 29 H 1.09003 * 109.46433 * 29.98254 * 1 2 3 30 30 H 1.09002 * 109.46662 * 149.98038 * 1 2 3 31 31 H 1.08004 * 126.16617 * 180.26216 * 4 3 2 32 32 H 1.09005 * 109.46882 * 329.71391 * 6 5 4 33 33 H 1.08996 * 109.47614 * 209.71020 * 6 5 4 34 34 H 1.08996 * 113.76202 * 108.10118 * 8 7 6 35 35 H 1.09000 * 113.86156 * 336.74547 * 8 7 6 36 36 H 1.09008 * 113.72937 * 269.26214 * 9 8 7 37 37 H 1.09000 * 109.46666 * 180.02562 * 12 10 9 38 38 H 1.08994 * 109.47515 * 300.08546 * 12 10 9 39 39 H 1.09005 * 109.46872 * 60.08864 * 12 10 9 40 40 H 0.97004 * 120.00170 * 24.99779 * 13 10 9 41 41 H 1.09003 * 109.46836 * 299.99408 * 16 14 13 42 42 H 1.08995 * 109.46897 * 59.99271 * 16 14 13 43 43 H 0.96995 * 120.00252 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.76273 * 23.24008 * 26 7 6 45 45 H 1.08997 * 113.82641 * 251.80979 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0051 5 6 3.5698 -0.6757 -0.0005 6 6 4.7937 -1.5550 -0.0005 7 7 5.1913 -1.8408 1.3845 8 6 6.5163 -2.4974 1.4311 9 6 5.9058 -3.4227 2.4991 10 6 6.2984 -4.8927 2.3377 11 1 6.0422 -5.2288 1.3330 12 6 5.5442 -5.7378 3.3662 13 7 7.7406 -5.0389 2.5487 14 6 8.4018 -6.0731 1.9920 15 8 7.8025 -6.8828 1.3167 16 6 9.8853 -6.2239 2.2095 17 16 10.4756 -7.6981 1.3410 18 6 12.1874 -7.6314 1.7537 19 1 12.5623 -6.8314 2.3748 20 6 13.0536 -8.6076 1.2812 21 7 12.5966 -9.5829 0.5247 22 14 14.8682 -8.5373 1.7193 23 1 15.1031 -9.2896 2.9778 24 1 15.6658 -9.1440 0.6235 25 1 15.2782 -7.1221 1.9048 26 6 4.5391 -3.0749 1.8820 27 8 2.2872 -1.0890 -0.0005 28 1 -0.3633 -0.0003 1.0276 29 1 -0.3632 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 4.4157 1.3161 0.0103 32 1 5.6081 -1.0440 -0.5142 33 1 4.5696 -2.4897 -0.5144 34 1 7.3117 -1.8551 1.8091 35 1 6.7868 -3.0106 0.5083 36 1 6.0321 -3.0587 3.5189 37 1 5.8242 -6.7850 3.2514 38 1 5.7991 -5.4006 4.3708 39 1 4.4710 -5.6302 3.2081 40 1 8.2199 -4.3914 3.0891 41 1 10.4004 -5.3440 1.8239 42 1 10.0877 -6.3252 3.2757 43 1 13.2019 -10.2653 0.1949 44 1 4.2282 -3.7570 1.0907 45 1 3.7576 -2.8933 2.6198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675279539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:34 Heat of formation + Delta-G solvation = 17.045457 kcal Electronic energy + Delta-G solvation = -25897.260315 eV Core-core repulsion = 22043.842547 eV Total energy + Delta-G solvation = -3853.417768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.62986 -40.69513 -39.00628 -35.39220 -35.05432 -33.27827 -32.44960 -31.64987 -30.44150 -28.57670 -27.33191 -26.46016 -25.50448 -24.72259 -22.72331 -22.04645 -21.19065 -20.42875 -19.92382 -17.90815 -17.34904 -17.20522 -16.57143 -16.43300 -16.02625 -15.50078 -15.22461 -14.92945 -14.82186 -14.55093 -14.19881 -13.95691 -13.57469 -13.46270 -13.27469 -13.18931 -13.16736 -12.89526 -12.77893 -12.66878 -12.23581 -11.98361 -11.76205 -11.57876 -11.33443 -11.11869 -11.08122 -11.03932 -10.98252 -10.81080 -10.77136 -9.83551 -9.48253 -9.34548 -9.08903 -8.98795 -8.90290 -8.26051 -6.52306 -6.23728 -3.94423 1.08753 2.26286 2.38004 2.97594 3.06188 3.20857 3.25996 3.29648 3.47808 3.62471 3.72942 4.09850 4.18599 4.22379 4.35696 4.56334 4.68508 4.81102 4.87146 4.91095 4.92344 5.01560 5.07159 5.11552 5.12618 5.16038 5.18723 5.28065 5.31929 5.40947 5.51576 5.53554 5.56810 5.66318 5.76392 5.84866 5.86376 5.99589 6.01610 6.11618 6.17776 6.46100 6.63011 7.41227 7.57603 7.68868 8.33172 8.58820 9.21741 10.83677 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.001731 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.190593 B =16169.820655 C =16555.358937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.185 3.815 3 N -0.486 5.486 4 C -0.024 4.024 5 C -0.034 4.034 6 C 0.104 3.896 7 N -0.478 5.478 8 C 0.011 3.989 9 C -0.121 4.121 10 C 0.152 3.848 11 H 0.086 0.914 12 C -0.163 4.163 13 N -0.733 5.733 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.014 3.986 27 O -0.201 6.201 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.183 0.817 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.077 0.923 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.181 19.338 2.507 28.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 N -0.216 5.216 4 C -0.164 4.164 5 C -0.088 4.088 6 C -0.025 4.025 7 N -0.201 5.201 8 C -0.117 4.117 9 C -0.141 4.141 10 C 0.047 3.953 11 H 0.104 0.896 12 C -0.221 4.221 13 N -0.387 5.387 14 C 0.320 3.680 15 O -0.392 6.392 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.115 4.115 27 O -0.088 6.088 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.200 0.800 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.503 19.006 1.568 29.497 hybrid contribution 2.531 -0.016 0.844 2.668 sum -19.973 18.990 2.412 27.665 Atomic orbital electron populations 1.20254 0.81375 1.05080 1.04700 1.26287 0.96456 0.78725 1.00666 1.70451 1.02194 1.30337 1.18626 1.23014 0.94940 0.92931 1.05490 1.23154 0.83124 0.95313 1.07175 1.21061 0.90785 0.98051 0.92587 1.68595 1.04446 1.29840 1.17187 1.23987 0.92879 0.95718 0.99123 1.23287 0.96019 0.94251 1.00525 1.20886 0.80930 0.93051 1.00452 0.89558 1.22157 0.99868 1.01214 0.98879 1.46036 1.08302 1.29452 1.54933 1.20311 0.89103 0.80237 0.78386 1.90699 1.69173 1.41354 1.38012 1.23534 0.93887 1.07232 1.05785 1.85390 1.06911 1.25839 1.65272 1.22871 0.93157 1.14741 1.37664 0.90926 1.24987 0.99465 0.94525 0.94565 1.70011 1.35768 1.12378 1.32124 0.86172 0.82699 0.78429 0.78227 1.20261 1.20745 1.19697 1.24089 0.96927 0.90655 0.99867 1.84375 1.16746 1.37839 1.69881 0.88929 0.88141 0.89375 0.80021 0.87252 0.91509 0.88597 0.90318 0.87569 0.91565 0.92435 0.91957 0.76835 0.89258 0.89249 0.92175 0.90473 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.19 1.72 8.34 -12.95 -0.11 1.62 16 3 N -0.49 -5.39 11.29 -11.10 -0.13 -5.52 16 4 C -0.02 -0.24 11.80 -17.77 -0.21 -0.45 16 5 C -0.03 -0.33 6.95 -35.69 -0.25 -0.58 16 6 C 0.10 0.81 5.35 -4.98 -0.03 0.78 16 7 N -0.48 -3.94 6.14 -239.52 -1.47 -5.42 16 8 C 0.01 0.09 7.38 -2.76 -0.02 0.06 16 9 C -0.12 -0.94 3.35 -89.68 -0.30 -1.24 16 10 C 0.15 1.58 2.29 -67.93 -0.16 1.43 16 11 H 0.09 1.07 7.48 -51.93 -0.39 0.69 16 12 C -0.16 -1.66 9.44 37.16 0.35 -1.31 16 13 N -0.73 -8.82 4.94 -53.81 -0.27 -9.09 16 14 C 0.53 9.37 7.81 -10.98 -0.09 9.28 16 15 O -0.52 -11.23 15.52 5.56 0.09 -11.15 16 16 C -0.15 -2.99 6.16 36.01 0.22 -2.76 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 22 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C 0.01 0.11 7.43 -2.63 -0.02 0.09 16 27 O -0.20 -2.07 10.78 5.35 0.06 -2.01 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.11 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.07 0.51 7.39 -51.93 -0.38 0.13 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.65 7.88 -51.93 -0.41 0.24 16 36 H 0.11 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 40 H 0.40 3.70 8.60 -40.82 -0.35 3.35 16 41 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.08 0.61 7.38 -51.93 -0.38 0.22 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -36.11 395.63 -9.23 -45.34 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.95 Total: 0.49 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.02 Total: -5.77 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -1.13 Total: -45.22 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.14 Total: -13.15 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.11 -9.23 -45.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675279539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.390 kcal (2) G-P(sol) polarization free energy of solvation -36.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds