Wall clock time and date at job start Tue Mar 31 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30253 * 125.62014 * 2 1 4 4 C 1.34477 * 108.69963 * 179.77280 * 3 2 1 5 5 C 1.34326 * 107.67188 * 0.39148 * 4 3 2 6 6 C 1.50697 * 126.44765 * 179.87607 * 5 4 3 7 7 N 1.46902 * 109.47169 * 89.70888 * 6 5 4 8 8 C 1.47953 * 111.00106 * 190.00237 * 7 6 5 9 9 C 1.53938 * 86.18256 * 222.42077 * 8 7 6 10 10 C 1.53002 * 113.73715 * 138.08049 * 9 8 7 11 11 H 1.08994 * 109.46352 * 305.00350 * 10 9 8 12 12 C 1.53001 * 109.46833 * 185.00527 * 10 9 8 13 13 N 1.46491 * 109.47054 * 65.00722 * 10 9 8 14 14 C 1.34779 * 120.00100 * 205.00398 * 13 10 9 15 15 O 1.21282 * 119.99579 * 359.97438 * 14 13 10 16 16 C 1.50700 * 120.00413 * 180.02562 * 14 13 10 17 17 S 1.80993 * 109.47114 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99933 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99962 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99678 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00566 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99572 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47171 * 90.00062 * 22 20 18 24 24 H 1.48500 * 109.47239 * 210.00334 * 22 20 18 25 25 H 1.48502 * 109.47426 * 329.99957 * 22 20 18 26 26 C 1.48188 * 111.06755 * 90.56721 * 7 6 5 27 27 O 1.33964 * 125.61791 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47134 * 269.98165 * 1 2 3 29 29 H 1.09003 * 109.46433 * 29.98254 * 1 2 3 30 30 H 1.09002 * 109.46662 * 149.98038 * 1 2 3 31 31 H 1.08004 * 126.16617 * 180.26216 * 4 3 2 32 32 H 1.09005 * 109.46882 * 329.71391 * 6 5 4 33 33 H 1.08996 * 109.47614 * 209.71020 * 6 5 4 34 34 H 1.08996 * 113.76202 * 108.10118 * 8 7 6 35 35 H 1.09000 * 113.86156 * 336.74547 * 8 7 6 36 36 H 1.09008 * 113.72937 * 269.26214 * 9 8 7 37 37 H 1.09000 * 109.46666 * 180.02562 * 12 10 9 38 38 H 1.08994 * 109.47515 * 300.08546 * 12 10 9 39 39 H 1.09005 * 109.46872 * 60.08864 * 12 10 9 40 40 H 0.97004 * 120.00170 * 24.99779 * 13 10 9 41 41 H 1.09003 * 109.46836 * 299.99408 * 16 14 13 42 42 H 1.08995 * 109.46897 * 59.99271 * 16 14 13 43 43 H 0.96995 * 120.00252 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.76273 * 23.24008 * 26 7 6 45 45 H 1.08997 * 113.82641 * 251.80979 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0051 5 6 3.5698 -0.6757 -0.0005 6 6 4.7937 -1.5550 -0.0005 7 7 5.1913 -1.8408 1.3845 8 6 6.5163 -2.4974 1.4311 9 6 5.9058 -3.4227 2.4991 10 6 6.2984 -4.8927 2.3377 11 1 6.0422 -5.2288 1.3330 12 6 5.5442 -5.7378 3.3662 13 7 7.7406 -5.0389 2.5487 14 6 8.4018 -6.0731 1.9920 15 8 7.8025 -6.8828 1.3167 16 6 9.8853 -6.2239 2.2095 17 16 10.4756 -7.6981 1.3410 18 6 12.1874 -7.6314 1.7537 19 1 12.5623 -6.8314 2.3748 20 6 13.0536 -8.6076 1.2812 21 7 12.5966 -9.5829 0.5247 22 14 14.8682 -8.5373 1.7193 23 1 15.1031 -9.2896 2.9778 24 1 15.6658 -9.1440 0.6235 25 1 15.2782 -7.1221 1.9048 26 6 4.5391 -3.0749 1.8820 27 8 2.2872 -1.0890 -0.0005 28 1 -0.3633 -0.0003 1.0276 29 1 -0.3632 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 4.4157 1.3161 0.0103 32 1 5.6081 -1.0440 -0.5142 33 1 4.5696 -2.4897 -0.5144 34 1 7.3117 -1.8551 1.8091 35 1 6.7868 -3.0106 0.5083 36 1 6.0321 -3.0587 3.5189 37 1 5.8242 -6.7850 3.2514 38 1 5.7991 -5.4006 4.3708 39 1 4.4710 -5.6302 3.2081 40 1 8.2199 -4.3914 3.0891 41 1 10.4004 -5.3440 1.8239 42 1 10.0877 -6.3252 3.2757 43 1 13.2019 -10.2653 0.1949 44 1 4.2282 -3.7570 1.0907 45 1 3.7576 -2.8933 2.6198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675279539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:33 Heat of formation + Delta-G solvation = -12.039600 kcal Electronic energy + Delta-G solvation = -25898.521538 eV Core-core repulsion = 22043.842547 eV Total energy + Delta-G solvation = -3854.678991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.32723 -41.47715 -40.24689 -36.45966 -35.78043 -34.57931 -34.00387 -32.64580 -31.17834 -29.89042 -27.97515 -27.65904 -27.08999 -25.44343 -23.49472 -22.85673 -21.92715 -21.55000 -20.78225 -19.76525 -18.14471 -17.94282 -17.76045 -17.47390 -16.87319 -16.74419 -16.40915 -16.17115 -16.03995 -15.81954 -15.20712 -14.77900 -14.60584 -14.58413 -14.30042 -13.94214 -13.86952 -13.80499 -13.75323 -13.32408 -13.23324 -13.15640 -13.01702 -12.88787 -12.60727 -12.56339 -12.31678 -12.03361 -11.91168 -11.71086 -11.68971 -11.52518 -11.13759 -10.88971 -10.25994 -10.21532 -9.89279 -9.66018 -8.65336 -8.34142 -6.11786 0.40442 1.28203 1.42728 1.48046 1.58198 1.62067 1.65521 1.69735 2.24944 2.29961 2.85016 3.00169 3.17056 3.30585 3.41998 3.55755 3.68734 3.96789 3.99671 4.07122 4.15793 4.21537 4.30684 4.31636 4.36928 4.45092 4.47840 4.53954 4.61846 4.63889 4.67076 4.70685 4.76442 4.80057 4.92452 4.98700 5.03475 5.17330 5.23412 5.33186 5.38615 5.42619 5.54874 5.83810 6.20409 6.56285 6.71632 7.07463 7.29996 8.74960 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.001731 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.190593 B =16169.820655 C =16555.358937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.183 3.817 3 N -0.519 5.519 4 C -0.038 4.038 5 C -0.043 4.043 6 C 0.106 3.894 7 N -0.483 5.483 8 C 0.013 3.987 9 C -0.106 4.106 10 C 0.154 3.846 11 H 0.064 0.936 12 C -0.159 4.159 13 N -0.706 5.706 14 C 0.537 3.463 15 O -0.566 6.566 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.258 1.258 26 C 0.014 3.986 27 O -0.214 6.214 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.197 0.803 32 H 0.124 0.876 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.416 0.584 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.074 0.926 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.028 21.438 4.092 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.024 4.024 3 N -0.249 5.249 4 C -0.176 4.176 5 C -0.096 4.096 6 C -0.023 4.023 7 N -0.206 5.206 8 C -0.115 4.115 9 C -0.125 4.125 10 C 0.049 3.951 11 H 0.083 0.917 12 C -0.217 4.217 13 N -0.359 5.359 14 C 0.322 3.678 15 O -0.445 6.445 16 C -0.281 4.281 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.182 1.182 26 C -0.115 4.115 27 O -0.102 6.102 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.214 0.786 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.253 0.747 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.364 21.166 3.189 30.957 hybrid contribution 2.327 -0.571 0.376 2.425 sum -20.037 20.595 3.565 28.954 Atomic orbital electron populations 1.20521 0.78441 1.06381 1.06059 1.27235 0.97965 0.78149 0.99013 1.70460 1.02924 1.31364 1.20176 1.23338 0.95245 0.93477 1.05582 1.23436 0.83388 0.95515 1.07301 1.21127 0.90637 0.97952 0.92560 1.68593 1.04700 1.29901 1.17413 1.24004 0.93056 0.95734 0.98752 1.23193 0.95945 0.91879 1.01518 1.20979 0.79451 0.95138 0.99513 0.91741 1.22119 1.01015 0.99000 0.99594 1.45767 1.09088 1.27774 1.53306 1.20011 0.88377 0.80968 0.78402 1.90692 1.69747 1.43518 1.40501 1.23381 0.95278 1.03812 1.05655 1.85572 1.08031 1.31329 1.67605 1.23217 0.93371 1.15153 1.37692 0.89892 1.26108 1.04871 0.93909 0.94199 1.70178 1.37697 1.13377 1.33532 0.84970 0.75917 0.79148 0.78053 1.19365 1.20378 1.18157 1.24097 0.96968 0.90522 0.99892 1.84384 1.17191 1.38429 1.70164 0.87379 0.87148 0.87712 0.78634 0.85818 0.91592 0.87316 0.91104 0.85809 0.94879 0.90749 0.90090 0.74662 0.87150 0.87363 0.92034 0.90800 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 71.24 0.75 0.32 16 2 C 0.18 3.25 8.34 88.34 0.74 3.99 16 3 N -0.52 -11.25 11.29 -303.83 -3.43 -14.68 16 4 C -0.04 -0.74 11.80 83.39 0.98 0.25 16 5 C -0.04 -0.80 6.95 24.79 0.17 -0.63 16 6 C 0.11 1.53 5.35 85.56 0.46 1.99 16 7 N -0.48 -7.06 6.14 -911.70 -5.60 -12.66 16 8 C 0.01 0.16 7.38 86.41 0.64 0.80 16 9 C -0.11 -1.36 3.35 -10.14 -0.03 -1.40 16 10 C 0.15 2.98 2.29 44.99 0.10 3.08 16 11 H 0.06 1.59 7.48 -2.39 -0.02 1.57 16 12 C -0.16 -3.02 9.44 71.98 0.68 -2.34 16 13 N -0.71 -15.65 4.94 -442.55 -2.19 -17.84 16 14 C 0.54 18.57 7.81 87.66 0.68 19.25 16 15 O -0.57 -25.19 15.52 -3.04 -0.05 -25.24 16 16 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 17 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 18 C -0.55 -30.82 9.50 67.95 0.65 -30.18 16 19 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 20 C 0.01 0.78 5.49 84.86 0.47 1.25 16 21 N -0.91 -55.63 13.22 21.65 0.29 -55.35 16 22 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 26 C 0.01 0.20 7.43 86.37 0.64 0.84 16 27 O -0.21 -4.25 10.78 -3.76 -0.04 -4.29 16 28 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.20 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.12 1.39 8.08 -2.38 -0.02 1.37 16 33 H 0.07 0.96 7.39 -2.39 -0.02 0.95 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.07 7.88 -2.39 -0.02 1.05 16 36 H 0.12 1.26 8.14 -2.38 -0.02 1.25 16 37 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.23 8.08 -2.38 -0.02 1.22 16 40 H 0.42 6.37 8.60 -92.71 -0.80 5.57 16 41 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 42 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 43 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 44 H 0.07 1.08 7.38 -2.39 -0.02 1.06 16 45 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -81.25 395.63 -2.59 -83.84 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.20 Total: 17.79 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 7.36 Total: -7.27 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -10.93 Total: -100.53 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.09 Total: -29.53 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -81.25 -2.59 -83.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675279539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.804 kcal (2) G-P(sol) polarization free energy of solvation -81.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds