Wall clock time and date at job start Tue Mar 31 2020 22:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32568 * 121.64582 * 2 1 4 4 S 1.77229 * 105.31906 * 180.20022 * 3 2 1 5 5 C 1.72204 * 94.85042 * 359.76538 * 4 3 2 6 6 O 1.21830 * 127.06282 * 180.02562 * 5 4 3 7 7 N 1.34244 * 105.88273 * 359.97438 * 5 4 3 8 8 C 1.46504 * 121.38123 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47335 * 90.02349 * 8 7 5 10 10 C 1.50696 * 109.47230 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99990 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00008 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99767 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47151 * 35.00555 * 13 12 10 15 15 C 1.52994 * 109.47311 * 275.00441 * 13 12 10 16 16 C 1.53002 * 109.46662 * 155.00181 * 13 12 10 17 17 C 1.53503 * 114.20285 * 180.02562 * 16 13 12 18 18 N 1.47066 * 87.98596 * 87.51823 * 17 16 13 19 19 C 1.36938 * 136.05640 * 207.07967 * 18 17 16 20 20 H 1.08004 * 119.99749 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99984 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99909 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99701 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47245 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46754 * 120.00489 * 23 21 19 26 26 H 1.48495 * 109.46700 * 240.00164 * 23 21 19 27 27 C 1.47060 * 87.88579 * 27.11915 * 18 17 16 28 28 H 1.09004 * 109.46864 * 270.23788 * 1 2 3 29 29 H 1.08999 * 109.47452 * 30.23215 * 1 2 3 30 30 H 1.08992 * 109.47441 * 150.23993 * 1 2 3 31 31 H 1.08000 * 127.34452 * 359.94775 * 3 2 1 32 32 H 1.08994 * 109.47036 * 330.02336 * 8 7 5 33 33 H 1.09001 * 109.46771 * 210.02182 * 8 7 5 34 34 H 1.09004 * 109.47139 * 60.00189 * 9 8 7 35 35 H 1.08999 * 109.47130 * 300.00431 * 9 8 7 36 36 H 0.96992 * 120.00236 * 0.02562 * 12 10 9 37 37 H 1.09003 * 109.46727 * 299.99853 * 15 13 12 38 38 H 1.08999 * 109.47339 * 59.99949 * 15 13 12 39 39 H 1.08998 * 109.47088 * 180.02562 * 15 13 12 40 40 H 1.08993 * 113.41318 * 46.80178 * 16 13 12 41 41 H 1.09000 * 113.46355 * 332.73775 * 17 16 13 42 42 H 1.09003 * 113.46309 * 202.30220 * 17 16 13 43 43 H 0.97003 * 119.99575 * 179.97438 * 22 21 19 44 44 H 1.09006 * 113.47077 * 87.66003 * 27 18 17 45 45 H 1.09003 * 113.47044 * 218.03568 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6303 -0.0060 5 6 3.5607 -1.0573 -0.0010 6 8 4.3674 -1.9703 -0.0020 7 7 2.2222 -1.1604 0.0053 8 6 1.5577 -2.4660 0.0104 9 6 1.3325 -2.9181 1.4546 10 6 0.6484 -4.2608 1.4598 11 8 0.3689 -4.8031 0.4116 12 7 0.3480 -4.8596 2.6294 13 6 -0.3166 -6.1652 2.6344 14 1 0.0402 -6.7577 1.7919 15 6 -1.8291 -5.9681 2.5151 16 6 0.0013 -6.8941 3.9415 17 6 -0.6438 -8.2819 4.0611 18 7 0.5349 -8.8319 3.3749 19 6 0.7980 -9.9193 2.5853 20 1 0.0077 -10.6144 2.3429 21 6 2.0803 -10.1281 2.0965 22 7 3.0434 -9.2812 2.3924 23 14 2.4390 -11.6112 1.0187 24 1 1.1960 -12.4029 0.8366 25 1 2.9333 -11.1533 -0.3045 26 1 3.4729 -12.4564 1.6681 27 6 1.3070 -7.7007 3.9108 28 1 -0.3633 0.0043 1.0277 29 1 -0.3634 0.8879 -0.5174 30 1 -0.3634 -0.8920 -0.5101 31 1 1.8153 2.1368 -0.0008 32 1 2.1839 -3.1944 -0.5048 33 1 0.5976 -2.3870 -0.4995 34 1 0.7062 -2.1897 1.9698 35 1 2.2926 -2.9970 1.9645 36 1 0.5718 -4.4261 3.4677 37 1 -2.1858 -5.3756 3.3577 38 1 -2.0555 -5.4487 1.5839 39 1 -2.3235 -6.9395 2.5193 40 1 -0.1165 -6.2684 4.8261 41 1 -1.5658 -8.3827 3.4885 42 1 -0.7466 -8.6254 5.0905 43 1 3.9396 -9.4274 2.0511 44 1 1.7239 -7.8895 4.9001 45 1 2.0445 -7.3081 3.2107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675318181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:49 Heat of formation + Delta-G solvation = 18.413444 kcal Electronic energy + Delta-G solvation = -27272.017599 eV Core-core repulsion = 23418.659151 eV Total energy + Delta-G solvation = -3853.358448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.30733 -39.74148 -38.28885 -37.77387 -34.70873 -33.60509 -32.20106 -31.60011 -30.25725 -28.32222 -27.60934 -25.41491 -24.58734 -23.88615 -23.30577 -21.70055 -20.56099 -20.16295 -18.79694 -18.33489 -17.53816 -16.82172 -16.53247 -16.31207 -15.98026 -15.55179 -15.11712 -14.83049 -14.54654 -14.30397 -14.01542 -13.98475 -13.81412 -13.40406 -13.27822 -13.12749 -12.89049 -12.58839 -12.52490 -12.01923 -11.81778 -11.68698 -11.45817 -11.37522 -11.33332 -10.90916 -10.80716 -10.69432 -10.32133 -10.26234 -9.97070 -9.86855 -9.76886 -9.60246 -9.20462 -8.83536 -8.70997 -8.21480 -6.84969 -5.72997 -3.05535 0.71874 1.10019 1.53448 1.91651 2.46465 2.78841 3.38364 3.42912 3.47381 3.50839 4.16783 4.48353 4.49566 4.53440 4.69867 4.84366 4.97073 5.04412 5.15148 5.17860 5.20925 5.25719 5.30845 5.35390 5.45993 5.56537 5.67564 5.74145 5.85634 5.87123 6.02611 6.09868 6.27702 6.43455 6.48121 6.52901 6.63284 6.71211 6.86339 7.10770 7.20668 7.32217 7.58913 7.72239 8.01269 8.41523 9.07136 9.74432 10.66801 11.44368 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.002643 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.013619 B =10592.817457 C =11752.385940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.105 3.895 3 C -0.243 4.243 4 S -0.007 6.007 5 C 0.479 3.521 6 O -0.463 6.463 7 N -0.533 5.533 8 C 0.115 3.885 9 C -0.156 4.156 10 C 0.519 3.481 11 O -0.538 6.538 12 N -0.716 5.716 13 C 0.170 3.830 14 H 0.104 0.896 15 C -0.156 4.156 16 C -0.156 4.156 17 C 0.126 3.874 18 N -0.608 5.608 19 C -0.219 4.219 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.917 5.917 23 Si 0.911 3.089 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.159 3.841 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.191 0.809 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.396 0.604 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.034 0.966 43 H 0.253 0.747 44 H 0.024 0.976 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.965 25.105 -0.523 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.006 4.006 3 C -0.381 4.381 4 S 0.236 5.764 5 C 0.161 3.839 6 O -0.341 6.341 7 N -0.254 5.254 8 C -0.010 4.010 9 C -0.198 4.198 10 C 0.304 3.696 11 O -0.415 6.415 12 N -0.366 5.366 13 C 0.066 3.934 14 H 0.122 0.878 15 C -0.214 4.214 16 C -0.176 4.176 17 C 0.000 4.000 18 N -0.334 5.334 19 C -0.346 4.346 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.564 5.564 23 Si 0.741 3.259 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.033 3.967 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.208 0.792 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.229 0.771 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.259 24.510 -1.513 25.342 hybrid contribution -0.656 -1.361 0.174 1.521 sum -6.915 23.149 -1.340 24.197 Atomic orbital electron populations 1.20832 0.86621 1.04716 1.04130 1.19482 0.95889 0.84941 1.00267 1.24866 0.93187 1.01237 1.18855 1.85186 1.08551 1.01538 1.81141 1.21630 0.83853 0.95644 0.82778 1.91031 1.48500 1.42226 1.52347 1.46180 1.06392 1.07896 1.64915 1.21664 1.00033 0.82185 0.97077 1.21955 1.03163 0.96135 0.98501 1.20114 0.78791 0.86444 0.84287 1.90745 1.53727 1.65650 1.31329 1.46038 1.60980 1.21639 1.07908 1.20634 0.91224 0.82146 0.99400 0.87841 1.22119 0.96163 1.02152 1.01000 1.23283 1.02715 0.96130 0.95468 1.22409 0.92559 0.89383 0.95687 1.45608 1.05741 1.27586 1.54512 1.18947 0.94556 0.99968 1.21153 0.90132 1.24784 0.95654 0.98986 1.00898 1.69824 1.01189 1.36832 1.48562 0.86067 0.77866 0.81923 0.80049 1.20443 1.21620 1.21787 1.22104 0.92434 0.85532 0.96640 0.89516 0.89137 0.90112 0.79231 0.87556 0.87818 0.88573 0.88171 0.77095 0.93198 0.92825 0.91287 0.91331 0.93845 0.94878 0.93720 0.95876 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 9.69 36.00 0.35 -0.08 16 2 C 0.11 0.76 6.59 -82.51 -0.54 0.22 16 3 C -0.24 -1.61 11.25 28.83 0.32 -1.28 16 4 S -0.01 -0.07 22.97 -107.50 -2.47 -2.54 16 5 C 0.48 6.24 8.27 53.82 0.45 6.68 16 6 O -0.46 -7.90 17.55 5.07 0.09 -7.81 16 7 N -0.53 -5.51 2.60 -117.28 -0.31 -5.81 16 8 C 0.12 1.28 4.56 -4.04 -0.02 1.26 16 9 C -0.16 -1.66 6.02 -27.89 -0.17 -1.82 16 10 C 0.52 7.60 7.79 -10.99 -0.09 7.52 16 11 O -0.54 -10.15 15.65 5.55 0.09 -10.07 16 12 N -0.72 -10.00 5.08 -53.81 -0.27 -10.27 16 13 C 0.17 2.89 2.41 -67.93 -0.16 2.73 16 14 H 0.10 2.35 7.36 -51.93 -0.38 1.97 16 15 C -0.16 -2.23 9.29 37.15 0.35 -1.88 16 16 C -0.16 -2.74 3.73 -90.10 -0.34 -3.07 16 17 C 0.13 2.51 8.08 -8.51 -0.07 2.44 16 18 N -0.61 -15.61 3.58 -184.76 -0.66 -16.27 16 19 C -0.22 -6.25 10.75 -15.06 -0.16 -6.41 16 20 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -28.03 11.51 55.49 0.64 -27.40 16 23 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 C 0.16 3.69 6.92 -8.51 -0.06 3.64 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.21 8.10 -51.93 -0.42 -0.21 16 30 H 0.08 0.38 6.18 -51.93 -0.32 0.05 16 31 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.11 1.49 7.76 -51.93 -0.40 1.09 16 33 H 0.10 0.98 6.07 -51.93 -0.32 0.66 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.40 4.29 8.60 -40.82 -0.35 3.94 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.01 6.50 -51.93 -0.34 0.67 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.04 0.82 6.43 -51.93 -0.33 0.48 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.92 7.10 -51.93 -0.37 1.55 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -36.43 384.11 -8.95 -45.38 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.58 Total: 1.45 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -0.24 Total: 9.65 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.60 Total: -59.75 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.18 Total: -17.87 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.47 Total: -2.54 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.43 -8.95 -45.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675318181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.792 kcal (2) G-P(sol) polarization free energy of solvation -36.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds