Wall clock time and date at job start Tue Mar 31 2020 22:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32568 * 121.64582 * 2 1 4 4 S 1.77229 * 105.31906 * 180.20022 * 3 2 1 5 5 C 1.72204 * 94.85042 * 359.76538 * 4 3 2 6 6 O 1.21830 * 127.06282 * 180.02562 * 5 4 3 7 7 N 1.34244 * 105.88273 * 359.97438 * 5 4 3 8 8 C 1.46504 * 121.38123 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47335 * 90.02349 * 8 7 5 10 10 C 1.50696 * 109.47230 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99990 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00008 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99767 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47151 * 35.00555 * 13 12 10 15 15 C 1.52994 * 109.47311 * 275.00441 * 13 12 10 16 16 C 1.53002 * 109.46662 * 155.00181 * 13 12 10 17 17 C 1.53503 * 114.20285 * 180.02562 * 16 13 12 18 18 N 1.47066 * 87.98596 * 87.51823 * 17 16 13 19 19 C 1.36938 * 136.05640 * 207.07967 * 18 17 16 20 20 H 1.08004 * 119.99749 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99984 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99909 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99701 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47245 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46754 * 120.00489 * 23 21 19 26 26 H 1.48495 * 109.46700 * 240.00164 * 23 21 19 27 27 C 1.47060 * 87.88579 * 27.11915 * 18 17 16 28 28 H 1.09004 * 109.46864 * 270.23788 * 1 2 3 29 29 H 1.08999 * 109.47452 * 30.23215 * 1 2 3 30 30 H 1.08992 * 109.47441 * 150.23993 * 1 2 3 31 31 H 1.08000 * 127.34452 * 359.94775 * 3 2 1 32 32 H 1.08994 * 109.47036 * 330.02336 * 8 7 5 33 33 H 1.09001 * 109.46771 * 210.02182 * 8 7 5 34 34 H 1.09004 * 109.47139 * 60.00189 * 9 8 7 35 35 H 1.08999 * 109.47130 * 300.00431 * 9 8 7 36 36 H 0.96992 * 120.00236 * 0.02562 * 12 10 9 37 37 H 1.09003 * 109.46727 * 299.99853 * 15 13 12 38 38 H 1.08999 * 109.47339 * 59.99949 * 15 13 12 39 39 H 1.08998 * 109.47088 * 180.02562 * 15 13 12 40 40 H 1.08993 * 113.41318 * 46.80178 * 16 13 12 41 41 H 1.09000 * 113.46355 * 332.73775 * 17 16 13 42 42 H 1.09003 * 113.46309 * 202.30220 * 17 16 13 43 43 H 0.97003 * 119.99575 * 179.97438 * 22 21 19 44 44 H 1.09006 * 113.47077 * 87.66003 * 27 18 17 45 45 H 1.09003 * 113.47044 * 218.03568 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6303 -0.0060 5 6 3.5607 -1.0573 -0.0010 6 8 4.3674 -1.9703 -0.0020 7 7 2.2222 -1.1604 0.0053 8 6 1.5577 -2.4660 0.0104 9 6 1.3325 -2.9181 1.4546 10 6 0.6484 -4.2608 1.4598 11 8 0.3689 -4.8031 0.4116 12 7 0.3480 -4.8596 2.6294 13 6 -0.3166 -6.1652 2.6344 14 1 0.0402 -6.7577 1.7919 15 6 -1.8291 -5.9681 2.5151 16 6 0.0013 -6.8941 3.9415 17 6 -0.6438 -8.2819 4.0611 18 7 0.5349 -8.8319 3.3749 19 6 0.7980 -9.9193 2.5853 20 1 0.0077 -10.6144 2.3429 21 6 2.0803 -10.1281 2.0965 22 7 3.0434 -9.2812 2.3924 23 14 2.4390 -11.6112 1.0187 24 1 1.1960 -12.4029 0.8366 25 1 2.9333 -11.1533 -0.3045 26 1 3.4729 -12.4564 1.6681 27 6 1.3070 -7.7007 3.9108 28 1 -0.3633 0.0043 1.0277 29 1 -0.3634 0.8879 -0.5174 30 1 -0.3634 -0.8920 -0.5101 31 1 1.8153 2.1368 -0.0008 32 1 2.1839 -3.1944 -0.5048 33 1 0.5976 -2.3870 -0.4995 34 1 0.7062 -2.1897 1.9698 35 1 2.2926 -2.9970 1.9645 36 1 0.5718 -4.4261 3.4677 37 1 -2.1858 -5.3756 3.3577 38 1 -2.0555 -5.4487 1.5839 39 1 -2.3235 -6.9395 2.5193 40 1 -0.1165 -6.2684 4.8261 41 1 -1.5658 -8.3827 3.4885 42 1 -0.7466 -8.6254 5.0905 43 1 3.9396 -9.4274 2.0511 44 1 1.7239 -7.8895 4.9001 45 1 2.0445 -7.3081 3.2107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675318181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:49 Heat of formation + Delta-G solvation = -8.162200 kcal Electronic energy + Delta-G solvation = -27273.170005 eV Core-core repulsion = 23418.659151 eV Total energy + Delta-G solvation = -3854.510854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.14315 -41.07035 -39.84804 -38.72057 -36.13359 -34.49183 -34.20800 -32.44121 -31.46457 -29.53809 -28.97190 -26.62029 -25.95188 -25.53525 -24.30898 -23.20254 -21.54107 -21.25192 -20.34479 -19.05693 -18.78273 -18.51637 -17.65283 -17.45794 -17.13233 -16.91930 -16.59834 -16.01492 -15.75750 -15.61577 -15.31271 -14.76393 -14.68074 -14.53683 -14.51933 -14.32760 -14.23075 -13.74494 -13.48433 -13.25006 -13.18362 -13.08741 -12.88846 -12.53445 -12.41261 -12.35511 -12.26453 -12.04813 -11.99284 -11.81447 -11.51762 -11.25123 -11.11656 -10.95172 -10.86470 -10.58341 -10.04429 -8.96304 -8.91705 -7.93808 -5.25247 -0.14389 0.37819 0.87980 1.12081 1.38769 1.41143 1.50611 1.59258 1.67351 2.27259 2.43875 3.29095 3.47256 3.52979 3.60738 3.62890 3.70687 3.89516 3.96019 4.19437 4.30428 4.42784 4.46863 4.52994 4.58496 4.67325 4.70271 4.77403 4.80934 4.82121 4.82560 4.86846 5.00720 5.03937 5.21953 5.23127 5.33175 5.33584 5.49714 5.53632 5.71806 5.74699 5.93193 6.23668 6.58438 6.88347 7.28833 7.59167 8.59750 9.23725 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.002643 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.013619 B =10592.817457 C =11752.385940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.091 3.909 3 C -0.220 4.220 4 S -0.001 6.001 5 C 0.455 3.545 6 O -0.527 6.527 7 N -0.529 5.529 8 C 0.119 3.881 9 C -0.139 4.139 10 C 0.515 3.485 11 O -0.586 6.586 12 N -0.706 5.706 13 C 0.174 3.826 14 H 0.037 0.963 15 C -0.144 4.144 16 C -0.119 4.119 17 C 0.126 3.874 18 N -0.644 5.644 19 C -0.221 4.221 20 H 0.085 0.915 21 C -0.072 4.072 22 N -0.953 5.953 23 Si 0.973 3.027 24 H -0.260 1.260 25 H -0.299 1.299 26 H -0.291 1.291 27 C 0.152 3.848 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.232 0.768 32 H 0.063 0.937 33 H 0.123 0.877 34 H 0.143 0.857 35 H 0.092 0.908 36 H 0.415 0.585 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.244 0.756 44 H 0.018 0.982 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.273 28.089 0.962 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 C -0.357 4.357 4 S 0.242 5.758 5 C 0.139 3.861 6 O -0.411 6.411 7 N -0.249 5.249 8 C -0.007 4.007 9 C -0.180 4.180 10 C 0.301 3.699 11 O -0.467 6.467 12 N -0.357 5.357 13 C 0.070 3.930 14 H 0.056 0.944 15 C -0.202 4.202 16 C -0.138 4.138 17 C 0.001 3.999 18 N -0.370 5.370 19 C -0.350 4.350 20 H 0.103 0.897 21 C -0.265 4.265 22 N -0.602 5.602 23 Si 0.802 3.198 24 H -0.184 1.184 25 H -0.226 1.226 26 H -0.218 1.218 27 C 0.026 3.974 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.093 0.907 31 H 0.249 0.751 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.110 0.890 36 H 0.252 0.748 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.139 0.861 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.036 0.964 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.646 27.557 0.026 29.197 hybrid contribution 0.309 -2.168 -0.277 2.208 sum -9.338 25.389 -0.251 27.053 Atomic orbital electron populations 1.20989 0.83688 1.05689 1.05619 1.20074 0.97503 0.83706 1.00536 1.25459 0.90347 1.02752 1.17114 1.85173 1.11627 0.98743 1.80299 1.22148 0.84421 0.96512 0.83048 1.90984 1.50266 1.44542 1.55338 1.46195 1.05808 1.08660 1.64214 1.21513 0.99877 0.82008 0.97296 1.21860 1.02969 0.94647 0.98522 1.20784 0.78030 0.87485 0.83563 1.90727 1.55711 1.67130 1.33102 1.45880 1.60488 1.20463 1.08852 1.20335 0.93409 0.82708 0.96589 0.94431 1.21998 0.93260 1.02543 1.02377 1.23063 0.97409 0.95777 0.97588 1.22641 0.91326 0.89817 0.96134 1.45979 1.08728 1.27306 1.55007 1.19348 0.94527 1.00390 1.20719 0.89704 1.25618 0.95866 1.01948 1.03064 1.70029 1.01058 1.38762 1.50380 0.85074 0.78119 0.78964 0.77663 1.18424 1.22624 1.21750 1.22104 0.94032 0.86411 0.94873 0.87644 0.86532 0.90750 0.75138 0.91833 0.85891 0.83869 0.89011 0.74784 0.89353 0.93411 0.91745 0.86112 0.92466 0.92731 0.94748 0.96393 0.95352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.40 9.69 71.23 0.69 0.29 16 2 C 0.09 1.05 6.59 40.71 0.27 1.32 16 3 C -0.22 -2.10 11.25 66.67 0.75 -1.35 16 4 S 0.00 -0.03 22.97 -56.49 -1.30 -1.33 16 5 C 0.45 12.35 8.27 129.87 1.07 13.43 16 6 O -0.53 -19.73 17.55 -4.77 -0.08 -19.81 16 7 N -0.53 -10.68 2.60 -643.43 -1.68 -12.36 16 8 C 0.12 2.68 4.56 86.38 0.39 3.08 16 9 C -0.14 -2.84 6.02 29.85 0.18 -2.66 16 10 C 0.51 15.14 7.79 87.66 0.68 15.83 16 11 O -0.59 -23.21 15.65 -3.05 -0.05 -23.26 16 12 N -0.71 -18.90 5.08 -442.53 -2.25 -21.15 16 13 C 0.17 5.82 2.41 44.99 0.11 5.93 16 14 H 0.04 1.78 7.36 -2.39 -0.02 1.77 16 15 C -0.14 -3.73 9.29 71.98 0.67 -3.06 16 16 C -0.12 -3.94 3.73 -10.46 -0.04 -3.98 16 17 C 0.13 4.76 8.08 83.18 0.67 5.43 16 18 N -0.64 -33.50 3.58 -738.47 -2.65 -36.15 16 19 C -0.22 -12.92 10.75 84.03 0.90 -12.02 16 20 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 21 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 22 N -0.95 -61.31 11.51 21.65 0.25 -61.06 16 23 Si 0.97 48.76 29.55 68.60 2.03 50.79 16 24 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 25 H -0.30 -15.27 7.11 99.48 0.71 -14.57 16 26 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 27 C 0.15 7.20 6.92 83.18 0.58 7.78 16 28 H 0.11 0.08 8.14 -2.38 -0.02 0.07 16 29 H 0.12 -0.09 8.10 -2.39 -0.02 -0.11 16 30 H 0.07 0.44 6.18 -2.39 -0.01 0.43 16 31 H 0.23 0.27 8.06 -2.91 -0.02 0.24 16 32 H 0.06 1.99 7.76 -2.39 -0.02 1.98 16 33 H 0.12 2.26 6.07 -2.39 -0.01 2.24 16 34 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.42 7.83 8.60 -92.71 -0.80 7.03 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 1.73 6.50 -2.39 -0.02 1.72 16 40 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.06 2.01 6.43 -2.39 -0.02 2.00 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.03 1.58 7.10 -2.39 -0.02 1.56 16 Total: -1.00 -89.37 384.11 1.89 -87.47 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.22 Total: 10.75 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 7.40 Total: 26.10 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -6.32 Total: -130.72 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.13 Total: -43.08 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.79 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.30 Total: -1.33 kcal Total: -89.37 1.89 -87.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675318181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.312 kcal (2) G-P(sol) polarization free energy of solvation -89.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds