Wall clock time and date at job start Tue Mar 31 2020 22:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 S 1.77222 * 127.34001 * 2 1 4 4 C 1.72209 * 94.84608 * 179.81255 * 3 2 1 5 5 O 1.21823 * 127.05909 * 180.19814 * 4 3 2 6 6 N 1.34247 * 105.88362 * 0.32018 * 4 3 2 7 7 C 1.46492 * 121.37844 * 179.87767 * 6 4 3 8 8 C 1.50703 * 109.47391 * 269.72145 * 7 6 4 9 9 O 1.21279 * 119.99779 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99915 * 180.28169 * 8 7 6 11 11 C 1.46505 * 120.00103 * 354.73129 * 10 8 7 12 12 C 1.46504 * 120.00178 * 174.73873 * 10 8 7 13 13 C 1.52999 * 109.46969 * 94.72332 * 12 10 8 14 14 H 1.09000 * 112.74264 * 316.18793 * 13 12 10 15 15 C 1.53495 * 113.46879 * 86.93217 * 13 12 10 16 16 C 1.53615 * 83.30460 * 140.82748 * 15 13 12 17 17 N 1.47063 * 88.00762 * 333.97831 * 16 15 13 18 18 C 1.36936 * 136.06244 * 207.09913 * 17 16 15 19 19 H 1.08002 * 120.00385 * 174.74047 * 18 17 16 20 20 C 1.38816 * 119.99823 * 354.74696 * 18 17 16 21 21 N 1.31610 * 119.99979 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99983 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46668 * 89.99941 * 22 20 18 24 24 H 1.48501 * 109.47307 * 209.99822 * 22 20 18 25 25 H 1.48501 * 109.47246 * 330.00553 * 22 20 18 26 26 C 1.32563 * 127.33513 * 180.02562 * 2 1 3 27 27 C 1.50696 * 121.65150 * 0.02562 * 26 2 1 28 28 H 1.09007 * 109.46931 * 270.00289 * 1 2 3 29 29 H 1.09004 * 109.47328 * 29.99423 * 1 2 3 30 30 H 1.08991 * 109.47423 * 149.99654 * 1 2 3 31 31 H 1.09008 * 109.47271 * 149.72372 * 7 6 4 32 32 H 1.09003 * 109.47417 * 29.72518 * 7 6 4 33 33 H 1.09005 * 109.46657 * 90.00932 * 11 10 8 34 34 H 1.09003 * 109.47047 * 210.00188 * 11 10 8 35 35 H 1.08991 * 109.47425 * 330.00486 * 11 10 8 36 36 H 1.09002 * 109.47268 * 214.72310 * 12 10 8 37 37 H 1.09001 * 109.46685 * 334.72946 * 12 10 8 38 38 H 1.08990 * 114.20637 * 254.43243 * 15 13 12 39 39 H 1.09000 * 114.20563 * 27.26445 * 15 13 12 40 40 H 1.09003 * 113.50883 * 219.18669 * 16 15 13 41 41 H 1.08995 * 113.47043 * 88.76914 * 16 15 13 42 42 H 0.97005 * 120.00405 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.47423 * 269.98251 * 27 26 2 44 44 H 1.09005 * 109.46721 * 29.97326 * 27 26 2 45 45 H 1.08990 * 109.47691 * 149.97149 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5820 1.4090 0.0000 4 6 4.0345 0.4839 0.0056 5 8 5.1760 0.9095 0.0111 6 7 3.6508 -0.8026 0.0000 7 6 4.6312 -1.8910 -0.0002 8 6 4.9674 -2.2642 -1.4211 9 8 4.4402 -1.6782 -2.3428 10 7 5.8499 -3.2525 -1.6674 11 6 6.5688 -3.8858 -0.5590 12 6 6.0906 -3.6935 -3.0436 13 6 7.3052 -2.9557 -3.6105 14 1 7.3001 -1.8917 -3.3738 15 6 8.6403 -3.6452 -3.2973 16 6 8.9899 -3.2210 -4.7317 17 7 7.5506 -3.2381 -5.0329 18 6 6.7785 -3.4321 -6.1470 19 1 5.7028 -3.4714 -6.0585 20 6 7.3784 -3.5785 -7.3903 21 7 8.6892 -3.5303 -7.4982 22 14 6.3252 -3.8440 -8.9101 23 1 5.9792 -2.5296 -9.5081 24 1 7.0794 -4.6549 -9.8995 25 1 5.0798 -4.5584 -8.5307 26 6 2.3110 -1.0540 -0.0005 27 6 1.7707 -2.4607 -0.0017 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 4.2131 -2.7568 0.5136 32 1 5.5357 -1.5654 0.5137 33 1 5.9949 -4.7373 -0.1932 34 1 7.5440 -4.2272 -0.9062 35 1 6.7022 -3.1643 0.2470 36 1 6.2805 -4.7668 -3.0533 37 1 5.2146 -3.4739 -3.6539 38 1 9.2302 -3.1481 -2.5274 39 1 8.5642 -4.7233 -3.1562 40 1 9.5572 -3.9723 -5.2812 41 1 9.4348 -2.2279 -4.7945 42 1 9.1085 -3.6330 -8.3669 43 1 1.6403 -2.8008 1.0257 44 1 0.8095 -2.4803 -0.5155 45 1 2.4710 -3.1186 -0.5161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688897518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:32 Heat of formation + Delta-G solvation = 31.871289 kcal Electronic energy + Delta-G solvation = -27815.402892 eV Core-core repulsion = 23962.628020 eV Total energy + Delta-G solvation = -3852.774872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.41775 -39.54038 -37.99058 -37.75416 -35.32989 -33.81858 -32.17970 -30.70044 -29.80163 -28.30892 -27.90009 -26.45089 -25.18664 -23.81121 -23.42766 -22.08634 -20.15728 -19.36381 -19.13369 -18.42305 -17.59300 -17.08663 -16.74493 -16.07227 -15.71678 -15.55342 -15.26387 -14.65836 -14.26290 -14.17925 -14.07373 -13.90130 -13.67978 -13.43028 -13.23538 -13.15278 -12.85554 -12.69134 -12.64614 -12.52071 -12.24267 -11.85688 -11.58025 -11.47585 -11.13674 -11.10772 -10.92308 -10.74445 -10.43452 -10.20413 -10.11911 -9.85272 -9.80163 -9.54030 -9.33788 -8.77159 -8.39719 -8.01157 -6.84910 -5.74172 -3.05977 0.80839 1.22250 1.58168 1.98225 2.49360 2.55148 3.07990 3.41990 3.47258 3.48389 4.20549 4.31910 4.45538 4.49441 4.70689 4.73336 4.86745 5.02306 5.03477 5.06412 5.19090 5.26077 5.27040 5.36400 5.47676 5.48022 5.53769 5.57438 5.64293 5.76484 5.94198 5.97177 6.14949 6.25358 6.40069 6.48011 6.52029 6.66962 6.85236 7.16830 7.25169 7.38977 7.42549 7.58629 8.00930 8.14358 9.07447 9.73703 10.67663 11.44030 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.002982 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.624797 B = 9388.421115 C =10099.682616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.209 4.209 3 S 0.004 5.996 4 C 0.489 3.511 5 O -0.470 6.470 6 N -0.515 5.515 7 C 0.083 3.917 8 C 0.492 3.508 9 O -0.517 6.517 10 N -0.606 5.606 11 C 0.073 3.927 12 C 0.116 3.884 13 C 0.132 3.868 14 H 0.042 0.958 15 C -0.170 4.170 16 C 0.158 3.842 17 N -0.600 5.600 18 C -0.216 4.216 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.106 3.894 27 C -0.099 4.099 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.025 0.975 42 H 0.253 0.747 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.778 -0.437 23.334 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.329 4.329 3 S 0.247 5.753 4 C 0.171 3.829 5 O -0.349 6.349 6 N -0.235 5.235 7 C -0.046 4.046 8 C 0.277 3.723 9 O -0.392 6.392 10 N -0.340 5.340 11 C -0.071 4.071 12 C -0.006 4.006 13 C 0.024 3.976 14 H 0.060 0.940 15 C -0.208 4.208 16 C 0.033 3.967 17 N -0.326 5.326 18 C -0.344 4.344 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.005 4.005 27 C -0.159 4.159 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.560 1.424 22.444 26.260 hybrid contribution 0.086 -1.313 -0.995 1.650 sum -13.473 0.111 21.449 25.329 Atomic orbital electron populations 1.20102 0.85720 1.03428 1.02640 1.23427 0.99635 0.92121 1.17704 1.85031 0.97826 1.11141 1.81271 1.21480 0.94649 0.84592 0.82214 1.90974 1.19259 1.71657 1.53034 1.45567 1.05747 1.07018 1.65187 1.21769 0.94624 0.91339 0.96883 1.20650 0.80237 0.80528 0.90914 1.90796 1.52088 1.50761 1.45525 1.47861 1.41033 1.36335 1.08776 1.21893 0.98096 0.97790 0.89284 1.21922 1.00694 0.98597 0.79427 1.22409 0.91949 0.96276 0.86971 0.94021 1.23786 0.98074 0.99766 0.99161 1.21945 0.87553 0.98159 0.89062 1.45705 1.02578 1.81865 1.02408 1.18926 0.89497 1.42128 0.83808 0.90211 1.24803 0.95898 1.02446 0.97220 1.69840 1.07636 1.55975 1.23248 0.86137 0.79144 0.77689 0.82927 1.21569 1.21637 1.20574 1.19168 0.81813 0.98163 1.01311 1.20759 1.02440 0.89200 1.03454 0.90722 0.90824 0.90314 0.86166 0.85976 0.92410 0.89870 0.91511 0.90235 0.89811 0.92732 0.90508 0.91541 0.95762 0.93683 0.89633 0.88970 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.10 36.01 0.36 0.00 16 2 C -0.21 -2.06 6.72 -36.21 -0.24 -2.30 16 3 S 0.00 0.05 22.97 -107.50 -2.47 -2.42 16 4 C 0.49 7.47 8.27 53.82 0.45 7.92 16 5 O -0.47 -8.66 17.55 5.08 0.09 -8.57 16 6 N -0.51 -6.51 2.09 -118.57 -0.25 -6.75 16 7 C 0.08 0.89 4.14 -5.20 -0.02 0.87 16 8 C 0.49 7.47 7.46 -10.99 -0.08 7.39 16 9 O -0.52 -10.56 15.99 5.56 0.09 -10.47 16 10 N -0.61 -8.43 2.87 -181.56 -0.52 -8.95 16 11 C 0.07 0.64 10.22 59.85 0.61 1.25 16 12 C 0.12 2.09 5.37 -4.04 -0.02 2.07 16 13 C 0.13 2.82 4.31 -72.40 -0.31 2.50 16 14 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 15 C -0.17 -3.15 7.13 -26.16 -0.19 -3.34 16 16 C 0.16 3.85 7.28 -8.45 -0.06 3.79 16 17 N -0.60 -15.85 3.65 -176.79 -0.64 -16.49 16 18 C -0.22 -6.25 10.55 -15.06 -0.16 -6.41 16 19 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -28.06 11.64 55.49 0.65 -27.42 16 22 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.11 1.08 6.59 -82.51 -0.54 0.54 16 27 C -0.10 -0.66 9.07 36.00 0.33 -0.33 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.38 6.77 -51.93 -0.35 0.03 16 31 H 0.12 0.78 6.83 -51.92 -0.35 0.42 16 32 H 0.12 1.21 6.91 -51.93 -0.36 0.85 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.75 7.15 -51.93 -0.37 0.38 16 35 H 0.07 0.45 6.49 -51.93 -0.34 0.11 16 36 H 0.08 1.32 7.84 -51.93 -0.41 0.91 16 37 H 0.08 1.76 7.36 -51.93 -0.38 1.38 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.32 7.93 -51.93 -0.41 0.91 16 40 H 0.07 1.74 7.37 -51.93 -0.38 1.36 16 41 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.50 6.69 -51.93 -0.35 0.15 16 45 H 0.07 0.56 6.70 -51.93 -0.35 0.21 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -38.42 381.51 -8.87 -47.29 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -6.56 Total: -3.41 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 0.02 Total: 13.64 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.77 Total: -59.61 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.18 Total: -19.04 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.47 Total: -2.42 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.42 -8.87 -47.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688897518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.159 kcal (2) G-P(sol) polarization free energy of solvation -38.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds