Wall clock time and date at job start Tue Mar 31 2020 22:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 S 1.77222 * 127.34001 * 2 1 4 4 C 1.72209 * 94.84608 * 179.81255 * 3 2 1 5 5 O 1.21823 * 127.05909 * 180.19814 * 4 3 2 6 6 N 1.34247 * 105.88362 * 0.32018 * 4 3 2 7 7 C 1.46492 * 121.37844 * 179.87767 * 6 4 3 8 8 C 1.50703 * 109.47391 * 269.72145 * 7 6 4 9 9 O 1.21279 * 119.99779 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99915 * 180.28169 * 8 7 6 11 11 C 1.46505 * 120.00103 * 354.73129 * 10 8 7 12 12 C 1.46504 * 120.00178 * 174.73873 * 10 8 7 13 13 C 1.52999 * 109.46969 * 94.72332 * 12 10 8 14 14 H 1.09000 * 112.74264 * 316.18793 * 13 12 10 15 15 C 1.53495 * 113.46879 * 86.93217 * 13 12 10 16 16 C 1.53615 * 83.30460 * 140.82748 * 15 13 12 17 17 N 1.47063 * 88.00762 * 333.97831 * 16 15 13 18 18 C 1.36936 * 136.06244 * 207.09913 * 17 16 15 19 19 H 1.08002 * 120.00385 * 174.74047 * 18 17 16 20 20 C 1.38816 * 119.99823 * 354.74696 * 18 17 16 21 21 N 1.31610 * 119.99979 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99983 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46668 * 89.99941 * 22 20 18 24 24 H 1.48501 * 109.47307 * 209.99822 * 22 20 18 25 25 H 1.48501 * 109.47246 * 330.00553 * 22 20 18 26 26 C 1.32563 * 127.33513 * 180.02562 * 2 1 3 27 27 C 1.50696 * 121.65150 * 0.02562 * 26 2 1 28 28 H 1.09007 * 109.46931 * 270.00289 * 1 2 3 29 29 H 1.09004 * 109.47328 * 29.99423 * 1 2 3 30 30 H 1.08991 * 109.47423 * 149.99654 * 1 2 3 31 31 H 1.09008 * 109.47271 * 149.72372 * 7 6 4 32 32 H 1.09003 * 109.47417 * 29.72518 * 7 6 4 33 33 H 1.09005 * 109.46657 * 90.00932 * 11 10 8 34 34 H 1.09003 * 109.47047 * 210.00188 * 11 10 8 35 35 H 1.08991 * 109.47425 * 330.00486 * 11 10 8 36 36 H 1.09002 * 109.47268 * 214.72310 * 12 10 8 37 37 H 1.09001 * 109.46685 * 334.72946 * 12 10 8 38 38 H 1.08990 * 114.20637 * 254.43243 * 15 13 12 39 39 H 1.09000 * 114.20563 * 27.26445 * 15 13 12 40 40 H 1.09003 * 113.50883 * 219.18669 * 16 15 13 41 41 H 1.08995 * 113.47043 * 88.76914 * 16 15 13 42 42 H 0.97005 * 120.00405 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.47423 * 269.98251 * 27 26 2 44 44 H 1.09005 * 109.46721 * 29.97326 * 27 26 2 45 45 H 1.08990 * 109.47691 * 149.97149 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5820 1.4090 0.0000 4 6 4.0345 0.4839 0.0056 5 8 5.1760 0.9095 0.0111 6 7 3.6508 -0.8026 0.0000 7 6 4.6312 -1.8910 -0.0002 8 6 4.9674 -2.2642 -1.4211 9 8 4.4402 -1.6782 -2.3428 10 7 5.8499 -3.2525 -1.6674 11 6 6.5688 -3.8858 -0.5590 12 6 6.0906 -3.6935 -3.0436 13 6 7.3052 -2.9557 -3.6105 14 1 7.3001 -1.8917 -3.3738 15 6 8.6403 -3.6452 -3.2973 16 6 8.9899 -3.2210 -4.7317 17 7 7.5506 -3.2381 -5.0329 18 6 6.7785 -3.4321 -6.1470 19 1 5.7028 -3.4714 -6.0585 20 6 7.3784 -3.5785 -7.3903 21 7 8.6892 -3.5303 -7.4982 22 14 6.3252 -3.8440 -8.9101 23 1 5.9792 -2.5296 -9.5081 24 1 7.0794 -4.6549 -9.8995 25 1 5.0798 -4.5584 -8.5307 26 6 2.3110 -1.0540 -0.0005 27 6 1.7707 -2.4607 -0.0017 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 4.2131 -2.7568 0.5136 32 1 5.5357 -1.5654 0.5137 33 1 5.9949 -4.7373 -0.1932 34 1 7.5440 -4.2272 -0.9062 35 1 6.7022 -3.1643 0.2470 36 1 6.2805 -4.7668 -3.0533 37 1 5.2146 -3.4739 -3.6539 38 1 9.2302 -3.1481 -2.5274 39 1 8.5642 -4.7233 -3.1562 40 1 9.5572 -3.9723 -5.2812 41 1 9.4348 -2.2279 -4.7945 42 1 9.1085 -3.6330 -8.3669 43 1 1.6403 -2.8008 1.0257 44 1 0.8095 -2.4803 -0.5155 45 1 2.4710 -3.1186 -0.5161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688897518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:31 Heat of formation + Delta-G solvation = 4.963364 kcal Electronic energy + Delta-G solvation = -27816.569707 eV Core-core repulsion = 23962.628020 eV Total energy + Delta-G solvation = -3853.941687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.39173 -40.82567 -39.64963 -38.82192 -36.57710 -34.63665 -34.31509 -31.68508 -30.47711 -29.96341 -29.41517 -27.41747 -26.00037 -25.47604 -24.92229 -23.54193 -21.17796 -21.05943 -20.33992 -19.28931 -18.84034 -18.52776 -18.12303 -17.38451 -16.93229 -16.77985 -16.65323 -16.12130 -15.81416 -15.51695 -14.94909 -14.90238 -14.73850 -14.48331 -14.42186 -14.04807 -13.73506 -13.66731 -13.54715 -13.49568 -13.39771 -13.16829 -12.99815 -12.85895 -12.67124 -12.54605 -12.45059 -12.27126 -11.89335 -11.87740 -11.66583 -11.34206 -11.29599 -11.12164 -10.91688 -10.40108 -9.69608 -8.97136 -8.91631 -7.96628 -5.29919 -0.19201 0.33346 0.73365 1.00392 1.39272 1.40440 1.43338 1.51093 1.60907 2.00370 2.43907 3.23997 3.33408 3.42841 3.50835 3.73325 3.76612 3.97557 4.08658 4.16292 4.23078 4.25410 4.35020 4.47743 4.55566 4.66605 4.67178 4.73427 4.79424 4.87562 4.88934 4.92538 4.97492 5.03309 5.05767 5.08025 5.17059 5.37568 5.40066 5.48681 5.63666 5.66813 5.88595 6.13263 6.31575 6.86554 7.01070 7.54589 8.56013 9.21603 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.002982 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.624797 B = 9388.421115 C =10099.682616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.202 4.202 3 S -0.013 6.013 4 C 0.467 3.533 5 O -0.522 6.522 6 N -0.515 5.515 7 C 0.089 3.911 8 C 0.486 3.514 9 O -0.582 6.582 10 N -0.600 5.600 11 C 0.061 3.939 12 C 0.134 3.866 13 C 0.130 3.870 14 H 0.010 0.990 15 C -0.125 4.125 16 C 0.147 3.853 17 N -0.630 5.630 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.066 4.066 21 N -0.953 5.953 22 Si 0.977 3.023 23 H -0.292 1.292 24 H -0.287 1.287 25 H -0.265 1.265 26 C 0.088 3.912 27 C -0.096 4.096 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.173 0.827 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.041 0.959 41 H 0.003 0.997 42 H 0.250 0.750 43 H 0.120 0.880 44 H 0.106 0.894 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.816 -2.884 26.082 30.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.321 4.321 3 S 0.231 5.769 4 C 0.151 3.849 5 O -0.405 6.405 6 N -0.235 5.235 7 C -0.039 4.039 8 C 0.273 3.727 9 O -0.462 6.462 10 N -0.333 5.333 11 C -0.080 4.080 12 C 0.009 3.991 13 C 0.023 3.977 14 H 0.028 0.972 15 C -0.163 4.163 16 C 0.022 3.978 17 N -0.356 5.356 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.259 4.259 21 N -0.601 5.601 22 Si 0.805 3.195 23 H -0.220 1.220 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.020 4.020 27 C -0.155 4.155 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.191 0.809 32 H 0.151 0.849 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.059 0.941 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.138 0.862 44 H 0.124 0.876 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.631 -1.073 25.270 29.733 hybrid contribution 0.663 -0.504 -1.808 1.990 sum -14.968 -1.577 23.462 27.875 Atomic orbital electron populations 1.20303 0.82833 1.04317 1.04433 1.24038 1.01023 0.90090 1.16928 1.85003 0.98036 1.13077 1.80821 1.21865 0.94659 0.85887 0.82522 1.90921 1.21064 1.72995 1.55568 1.45685 1.07135 1.06509 1.64143 1.21992 0.95399 0.92626 0.93927 1.21472 0.79423 0.79641 0.92177 1.90768 1.54575 1.52994 1.47828 1.47908 1.40969 1.36095 1.08343 1.22324 0.98213 0.99474 0.87975 1.21448 0.97203 0.99032 0.81384 1.22477 0.95389 0.95274 0.84572 0.97210 1.23548 0.95451 1.01213 0.96045 1.21993 0.86490 0.96505 0.92853 1.46117 1.03647 1.81847 1.03959 1.19232 0.89845 1.41313 0.85190 0.90552 1.25653 0.97163 1.02913 1.00130 1.70018 1.09192 1.57399 1.23513 0.85101 0.78057 0.77323 0.79032 1.21952 1.21271 1.18944 1.19855 0.80758 1.00199 1.01221 1.20929 1.02490 0.86312 1.05726 0.88373 0.90857 0.88339 0.80930 0.84910 0.88728 0.89637 0.89025 0.88101 0.93677 0.89119 0.87907 0.94060 0.97964 0.94154 0.86156 0.87580 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.10 71.24 0.72 0.16 16 2 C -0.20 -3.61 6.72 24.54 0.16 -3.45 16 3 S -0.01 -0.33 22.97 -56.49 -1.30 -1.63 16 4 C 0.47 14.67 8.27 129.87 1.07 15.74 16 5 O -0.52 -20.21 17.55 -4.74 -0.08 -20.30 16 6 N -0.52 -12.49 2.09 -647.50 -1.35 -13.84 16 7 C 0.09 1.70 4.14 85.64 0.35 2.05 16 8 C 0.49 14.34 7.46 87.66 0.65 14.99 16 9 O -0.58 -24.56 15.99 -3.03 -0.05 -24.61 16 10 N -0.60 -15.52 2.87 -846.73 -2.43 -17.95 16 11 C 0.06 0.80 10.22 127.77 1.31 2.10 16 12 C 0.13 4.71 5.37 86.38 0.46 5.18 16 13 C 0.13 5.59 4.31 41.79 0.18 5.77 16 14 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 15 C -0.12 -4.42 7.13 30.97 0.22 -4.20 16 16 C 0.15 7.34 7.28 83.22 0.61 7.94 16 17 N -0.63 -34.21 3.65 -713.25 -2.60 -36.81 16 18 C -0.23 -13.55 10.55 84.03 0.89 -12.66 16 19 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 21 N -0.95 -59.96 11.64 21.65 0.25 -59.70 16 22 Si 0.98 47.93 29.55 68.60 2.03 49.96 16 23 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 26 C 0.09 1.62 6.59 40.71 0.27 1.89 16 27 C -0.10 -0.90 9.07 71.23 0.65 -0.25 16 28 H 0.10 0.49 8.14 -2.38 -0.02 0.48 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.10 0.58 6.77 -2.39 -0.02 0.56 16 31 H 0.17 1.40 6.83 -2.38 -0.02 1.38 16 32 H 0.13 2.31 6.91 -2.39 -0.02 2.30 16 33 H 0.09 0.63 8.14 -2.38 -0.02 0.62 16 34 H 0.08 1.14 7.15 -2.39 -0.02 1.12 16 35 H 0.09 0.79 6.49 -2.39 -0.02 0.78 16 36 H 0.10 3.11 7.84 -2.39 -0.02 3.09 16 37 H 0.04 1.95 7.36 -2.39 -0.02 1.93 16 38 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.10 3.17 7.93 -2.39 -0.02 3.15 16 40 H 0.04 2.23 7.37 -2.39 -0.02 2.22 16 41 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 43 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.11 0.72 6.69 -2.38 -0.02 0.70 16 45 H 0.07 0.77 6.70 -2.39 -0.02 0.75 16 Total: -1.00 -92.71 381.51 3.48 -89.23 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.01 Total: 3.84 kcal Atomic # 6 Polarization: 23.81 SS G_CDS: 8.01 Total: 31.82 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -6.14 Total: -128.31 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.13 Total: -44.90 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -1.30 Total: -1.63 kcal Total: -92.71 3.48 -89.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688897518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.194 kcal (2) G-P(sol) polarization free energy of solvation -92.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds