Wall clock time and date at job start Tue Mar 31 2020 22:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30251 * 125.62111 * 2 1 4 4 C 1.34476 * 108.69867 * 179.83751 * 3 2 1 5 5 C 1.50707 * 126.16604 * 180.16888 * 4 3 2 6 6 C 1.34324 * 107.67032 * 0.42409 * 4 3 2 7 7 C 1.50708 * 126.44599 * 179.71950 * 6 4 3 8 8 N 1.46904 * 109.46684 * 90.00024 * 7 6 4 9 9 C 1.46897 * 110.99789 * 179.97438 * 8 7 6 10 10 H 1.09001 * 112.85454 * 334.67355 * 9 8 7 11 11 C 1.53788 * 113.61106 * 105.86610 * 9 8 7 12 12 C 1.53958 * 87.01778 * 139.95631 * 11 9 8 13 13 H 1.09001 * 113.73645 * 220.05985 * 12 11 9 14 14 N 1.46496 * 113.54131 * 89.18970 * 12 11 9 15 15 C 1.34776 * 119.99914 * 107.50114 * 14 12 11 16 16 O 1.21279 * 120.00069 * 0.02562 * 15 14 12 17 17 C 1.50695 * 120.00014 * 179.97438 * 15 14 12 18 18 S 1.80999 * 109.47398 * 180.02562 * 17 15 14 19 19 C 1.76204 * 100.00063 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00004 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99715 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00394 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99901 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47534 * 59.99563 * 23 21 19 25 25 H 1.48503 * 109.47541 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47089 * 299.99563 * 23 21 19 27 27 C 1.53773 * 113.61755 * 203.47183 * 9 8 7 28 28 O 1.33964 * 125.61467 * 180.30782 * 2 1 3 29 29 H 1.08999 * 109.47015 * 269.69408 * 1 2 3 30 30 H 1.09000 * 109.46646 * 29.68560 * 1 2 3 31 31 H 1.09000 * 109.47248 * 149.69278 * 1 2 3 32 32 H 1.08997 * 109.47298 * 270.30536 * 5 4 3 33 33 H 1.08999 * 109.46697 * 30.30436 * 5 4 3 34 34 H 1.09001 * 109.47022 * 150.30087 * 5 4 3 35 35 H 1.09001 * 109.47114 * 210.00163 * 7 6 4 36 36 H 1.08999 * 109.47260 * 330.00866 * 7 6 4 37 37 H 1.00893 * 111.00473 * 303.95545 * 8 7 6 38 38 H 1.09003 * 113.61139 * 254.53031 * 11 9 8 39 39 H 1.08994 * 113.61350 * 25.43493 * 11 9 8 40 40 H 0.97000 * 119.99589 * 287.50344 * 14 12 11 41 41 H 1.09007 * 109.47346 * 300.00652 * 17 15 14 42 42 H 1.09003 * 109.46994 * 60.00118 * 17 15 14 43 43 H 0.96999 * 120.00302 * 180.02562 * 22 21 19 44 44 H 1.09002 * 113.61746 * 334.57146 * 27 9 8 45 45 H 1.09003 * 113.61321 * 105.38987 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0036 5 6 4.7572 1.5725 0.0085 6 6 3.5698 -0.6757 -0.0036 7 6 4.7937 -1.5551 -0.0089 8 7 5.1919 -1.8482 1.3745 9 6 6.3841 -2.7057 1.4086 10 1 6.4960 -3.3111 0.5091 11 6 7.6672 -1.9609 1.8134 12 6 8.0356 -3.2084 2.6369 13 1 8.4844 -2.9794 3.6035 14 7 8.7947 -4.2064 1.8793 15 6 10.1075 -4.3847 2.1266 16 8 10.6603 -3.7194 2.9767 17 6 10.8883 -5.4117 1.3478 18 16 12.6097 -5.4127 1.9072 19 6 13.2709 -6.6663 0.8603 20 1 12.6321 -7.1676 0.1482 21 6 14.6125 -7.0103 0.9516 22 7 15.3909 -6.3998 1.8198 23 14 15.3137 -8.3388 -0.1587 24 1 15.1415 -7.9391 -1.5786 25 1 16.7588 -8.5162 0.1333 26 1 14.5982 -9.6169 0.0859 27 6 6.5291 -3.5076 2.7127 28 8 2.2872 -1.0890 -0.0059 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3632 0.8928 -0.5090 31 1 -0.3634 -0.8872 -0.5186 32 1 5.0477 1.7963 -1.0180 33 1 4.5131 2.4995 0.5274 34 1 5.5822 1.0763 0.5197 35 1 4.5692 -2.4871 -0.5276 36 1 5.6079 -1.0415 -0.5201 37 1 5.3430 -0.9974 1.8953 38 1 8.3435 -1.7715 0.9798 39 1 7.4844 -1.0748 2.4212 40 1 8.3525 -4.7388 1.1997 41 1 10.4534 -6.3981 1.5094 42 1 10.8511 -5.1678 0.2860 43 1 16.3286 -6.6399 1.8833 44 1 6.0345 -3.0452 3.5669 45 1 6.2865 -4.5648 2.6045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690266463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:10 Heat of formation + Delta-G solvation = 1.763253 kcal Electronic energy + Delta-G solvation = -25515.868902 eV Core-core repulsion = 21661.788447 eV Total energy + Delta-G solvation = -3854.080454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.71346 -40.25858 -38.35426 -35.78732 -35.35684 -33.30045 -32.44911 -32.24738 -29.81413 -29.19645 -28.02397 -25.94967 -25.51952 -24.59516 -23.24342 -22.11330 -21.12234 -20.78809 -19.60997 -17.87960 -17.29611 -17.11748 -16.57202 -16.09555 -15.78986 -15.52846 -15.20207 -14.93201 -14.82068 -14.33962 -14.17241 -13.92380 -13.78424 -13.53618 -13.40646 -13.24585 -13.11397 -13.02055 -12.82976 -12.64573 -12.60926 -12.37151 -11.96171 -11.88107 -11.26140 -11.06661 -11.05769 -10.99441 -10.89110 -10.78883 -10.59386 -9.84354 -9.45610 -9.10609 -9.07358 -8.92656 -8.76745 -8.26655 -6.52367 -6.23319 -3.94330 1.00796 2.21014 2.27362 2.97807 3.01926 3.22118 3.26070 3.29065 3.55274 3.65689 3.74712 4.18627 4.19325 4.29959 4.38488 4.40796 4.59157 4.67098 4.73204 4.81954 4.87928 4.93062 5.06683 5.10021 5.11843 5.16250 5.28956 5.29888 5.36599 5.44129 5.55917 5.57585 5.62226 5.70164 5.74094 5.75633 5.85282 5.95284 5.96349 6.10433 6.45133 6.68098 6.82668 7.36867 7.57348 7.65900 8.33087 8.56733 9.21849 10.84028 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027266 B = 0.001582 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.671698 B =17694.845717 C =17888.858396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.191 3.809 3 N -0.484 5.484 4 C -0.007 4.007 5 C -0.073 4.073 6 C -0.043 4.043 7 C 0.143 3.857 8 N -0.675 5.675 9 C 0.066 3.934 10 H 0.100 0.900 11 C -0.182 4.182 12 C 0.126 3.874 13 H 0.105 0.895 14 N -0.722 5.722 15 C 0.534 3.466 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.132 4.132 28 O -0.193 6.193 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.347 0.653 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.097 0.903 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.117 11.929 -4.569 31.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.016 4.016 3 N -0.214 5.214 4 C -0.127 4.127 5 C -0.130 4.130 6 C -0.097 4.097 7 C 0.014 3.986 8 N -0.306 5.306 9 C -0.044 4.044 10 H 0.118 0.882 11 C -0.222 4.222 12 C 0.019 3.981 13 H 0.123 0.877 14 N -0.375 5.375 15 C 0.321 3.679 16 O -0.389 6.389 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.686 4.686 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.171 4.171 28 O -0.079 6.079 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.167 0.833 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.687 13.092 -3.008 31.676 hybrid contribution 0.459 -1.902 -2.323 3.037 sum -28.228 11.190 -5.330 30.829 Atomic orbital electron populations 1.20264 0.81274 1.05103 1.04782 1.26249 0.96456 0.78707 1.00211 1.70354 1.01611 1.30384 1.19089 1.21560 0.93505 0.92133 1.05530 1.20139 0.91645 0.98195 1.03048 1.22988 0.83734 0.94350 1.08601 1.20288 0.88844 0.97938 0.91516 1.60448 1.36437 1.22026 1.11675 1.23173 0.86832 0.95419 0.98972 0.88193 1.24212 0.98259 0.98423 1.01325 1.21626 0.91527 0.88545 0.96415 0.87667 1.45721 1.09757 1.40626 1.41443 1.20340 0.81216 0.83374 0.82997 1.90702 1.68755 1.46780 1.32630 1.23538 1.04447 0.99778 1.02695 1.85404 0.95024 1.51351 1.51487 1.22828 0.97558 1.23866 1.24303 0.90969 1.24984 0.95863 0.96848 0.95812 1.70003 1.06266 1.40327 1.33663 0.86226 0.77920 0.81054 0.80307 1.19956 1.20785 1.19928 1.23438 0.94549 1.00987 0.98155 1.84397 1.16481 1.37459 1.69591 0.88837 0.88138 0.89299 0.90577 0.90323 0.90933 0.88930 0.91306 0.83321 0.90703 0.89097 0.76816 0.89151 0.89233 0.92103 0.88441 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.19 1.71 8.34 -12.95 -0.11 1.60 16 3 N -0.48 -5.17 11.29 -7.36 -0.08 -5.25 16 4 C -0.01 -0.06 7.11 -82.81 -0.59 -0.65 16 5 C -0.07 -0.49 10.05 36.01 0.36 -0.13 16 6 C -0.04 -0.40 6.90 -35.69 -0.25 -0.64 16 7 C 0.14 1.01 5.70 -4.97 -0.03 0.98 16 8 N -0.67 -4.92 6.60 -107.13 -0.71 -5.63 16 9 C 0.07 0.48 4.04 -66.90 -0.27 0.21 16 10 H 0.10 0.68 7.88 -51.93 -0.41 0.27 16 11 C -0.18 -1.56 7.51 -25.82 -0.19 -1.76 16 12 C 0.13 1.35 4.33 -67.03 -0.29 1.06 16 13 H 0.11 1.36 7.46 -51.93 -0.39 0.98 16 14 N -0.72 -8.97 5.26 -52.93 -0.28 -9.25 16 15 C 0.53 9.60 7.85 -10.99 -0.09 9.52 16 16 O -0.52 -11.41 15.46 5.56 0.09 -11.33 16 17 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 23 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C -0.13 -1.07 7.63 -25.92 -0.20 -1.27 16 28 O -0.19 -1.94 10.78 5.37 0.06 -1.88 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.38 7.79 -51.93 -0.40 -0.02 16 35 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 36 H 0.07 0.40 7.80 -51.93 -0.40 0.00 16 37 H 0.35 2.40 8.20 -39.30 -0.32 2.08 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.70 7.83 -51.93 -0.41 0.29 16 40 H 0.40 3.79 8.70 -40.82 -0.36 3.44 16 41 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 396.49 15.07 5.98 5.98 Total: -1.00 -36.36 396.49 -9.18 -45.54 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.88 Total: 1.28 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -0.85 Total: -6.61 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.33 Total: -45.38 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.14 Total: -13.21 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.36 -9.18 -45.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690266463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.304 kcal (2) G-P(sol) polarization free energy of solvation -36.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds