Wall clock time and date at job start Tue Mar 31 2020 22:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30251 * 125.62111 * 2 1 4 4 C 1.34476 * 108.69867 * 179.83751 * 3 2 1 5 5 C 1.50707 * 126.16604 * 180.16888 * 4 3 2 6 6 C 1.34324 * 107.67032 * 0.42409 * 4 3 2 7 7 C 1.50708 * 126.44599 * 179.71950 * 6 4 3 8 8 N 1.46904 * 109.46684 * 90.00024 * 7 6 4 9 9 C 1.46897 * 110.99789 * 179.97438 * 8 7 6 10 10 H 1.09001 * 112.85454 * 334.67355 * 9 8 7 11 11 C 1.53788 * 113.61106 * 105.86610 * 9 8 7 12 12 C 1.53958 * 87.01778 * 139.95631 * 11 9 8 13 13 H 1.09001 * 113.73645 * 220.05985 * 12 11 9 14 14 N 1.46496 * 113.54131 * 89.18970 * 12 11 9 15 15 C 1.34776 * 119.99914 * 107.50114 * 14 12 11 16 16 O 1.21279 * 120.00069 * 0.02562 * 15 14 12 17 17 C 1.50695 * 120.00014 * 179.97438 * 15 14 12 18 18 S 1.80999 * 109.47398 * 180.02562 * 17 15 14 19 19 C 1.76204 * 100.00063 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00004 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99715 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00394 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99901 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47534 * 59.99563 * 23 21 19 25 25 H 1.48503 * 109.47541 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47089 * 299.99563 * 23 21 19 27 27 C 1.53773 * 113.61755 * 203.47183 * 9 8 7 28 28 O 1.33964 * 125.61467 * 180.30782 * 2 1 3 29 29 H 1.08999 * 109.47015 * 269.69408 * 1 2 3 30 30 H 1.09000 * 109.46646 * 29.68560 * 1 2 3 31 31 H 1.09000 * 109.47248 * 149.69278 * 1 2 3 32 32 H 1.08997 * 109.47298 * 270.30536 * 5 4 3 33 33 H 1.08999 * 109.46697 * 30.30436 * 5 4 3 34 34 H 1.09001 * 109.47022 * 150.30087 * 5 4 3 35 35 H 1.09001 * 109.47114 * 210.00163 * 7 6 4 36 36 H 1.08999 * 109.47260 * 330.00866 * 7 6 4 37 37 H 1.00893 * 111.00473 * 303.95545 * 8 7 6 38 38 H 1.09003 * 113.61139 * 254.53031 * 11 9 8 39 39 H 1.08994 * 113.61350 * 25.43493 * 11 9 8 40 40 H 0.97000 * 119.99589 * 287.50344 * 14 12 11 41 41 H 1.09007 * 109.47346 * 300.00652 * 17 15 14 42 42 H 1.09003 * 109.46994 * 60.00118 * 17 15 14 43 43 H 0.96999 * 120.00302 * 180.02562 * 22 21 19 44 44 H 1.09002 * 113.61746 * 334.57146 * 27 9 8 45 45 H 1.09003 * 113.61321 * 105.38987 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0036 5 6 4.7572 1.5725 0.0085 6 6 3.5698 -0.6757 -0.0036 7 6 4.7937 -1.5551 -0.0089 8 7 5.1919 -1.8482 1.3745 9 6 6.3841 -2.7057 1.4086 10 1 6.4960 -3.3111 0.5091 11 6 7.6672 -1.9609 1.8134 12 6 8.0356 -3.2084 2.6369 13 1 8.4844 -2.9794 3.6035 14 7 8.7947 -4.2064 1.8793 15 6 10.1075 -4.3847 2.1266 16 8 10.6603 -3.7194 2.9767 17 6 10.8883 -5.4117 1.3478 18 16 12.6097 -5.4127 1.9072 19 6 13.2709 -6.6663 0.8603 20 1 12.6321 -7.1676 0.1482 21 6 14.6125 -7.0103 0.9516 22 7 15.3909 -6.3998 1.8198 23 14 15.3137 -8.3388 -0.1587 24 1 15.1415 -7.9391 -1.5786 25 1 16.7588 -8.5162 0.1333 26 1 14.5982 -9.6169 0.0859 27 6 6.5291 -3.5076 2.7127 28 8 2.2872 -1.0890 -0.0059 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3632 0.8928 -0.5090 31 1 -0.3634 -0.8872 -0.5186 32 1 5.0477 1.7963 -1.0180 33 1 4.5131 2.4995 0.5274 34 1 5.5822 1.0763 0.5197 35 1 4.5692 -2.4871 -0.5276 36 1 5.6079 -1.0415 -0.5201 37 1 5.3430 -0.9974 1.8953 38 1 8.3435 -1.7715 0.9798 39 1 7.4844 -1.0748 2.4212 40 1 8.3525 -4.7388 1.1997 41 1 10.4534 -6.3981 1.5094 42 1 10.8511 -5.1678 0.2860 43 1 16.3286 -6.6399 1.8833 44 1 6.0345 -3.0452 3.5669 45 1 6.2865 -4.5648 2.6045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690266463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:09 Heat of formation + Delta-G solvation = -27.136243 kcal Electronic energy + Delta-G solvation = -25517.122078 eV Core-core repulsion = 21661.788447 eV Total energy + Delta-G solvation = -3855.333630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.35740 -41.24961 -39.51923 -36.49029 -36.05403 -34.58402 -34.26074 -33.00595 -30.66828 -30.20986 -28.70837 -27.65743 -26.64511 -25.25228 -23.94632 -22.75605 -22.18473 -21.60512 -20.49464 -19.82501 -18.08529 -17.85405 -17.70266 -17.10712 -16.87161 -16.54505 -16.45475 -16.26139 -15.85555 -15.64791 -14.97030 -14.82533 -14.60135 -14.49198 -14.26517 -14.02546 -13.95179 -13.78699 -13.57362 -13.46833 -13.33786 -13.16566 -13.15197 -12.96360 -12.86117 -12.70153 -12.52000 -11.91225 -11.78087 -11.74393 -11.57821 -11.32601 -11.12421 -10.95765 -10.27346 -10.07682 -9.64950 -9.37774 -8.66222 -8.34025 -6.12268 0.37537 1.27242 1.44295 1.47345 1.56882 1.57248 1.60122 1.70034 2.25095 2.29463 3.00142 3.04185 3.16571 3.32475 3.51968 3.62239 3.77881 3.82033 3.91528 3.98192 4.03691 4.18106 4.31754 4.33854 4.50586 4.51601 4.61168 4.61851 4.65794 4.68335 4.76694 4.79615 4.87406 4.90118 4.93571 5.05867 5.08155 5.11839 5.17053 5.40528 5.42094 5.56428 5.94769 6.20018 6.27543 6.52043 6.72685 7.07234 7.26284 8.74871 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027266 B = 0.001582 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.671698 B =17694.845717 C =17888.858396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.187 3.813 3 N -0.518 5.518 4 C -0.022 4.022 5 C -0.071 4.071 6 C -0.054 4.054 7 C 0.147 3.853 8 N -0.678 5.678 9 C 0.081 3.919 10 H 0.113 0.887 11 C -0.174 4.174 12 C 0.110 3.890 13 H 0.079 0.921 14 N -0.695 5.695 15 C 0.536 3.464 16 O -0.565 6.565 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.262 1.262 27 C -0.119 4.119 28 O -0.208 6.208 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.350 0.650 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.416 0.584 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.103 0.897 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.166 10.937 -6.323 33.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.020 4.020 3 N -0.249 5.249 4 C -0.142 4.142 5 C -0.129 4.129 6 C -0.107 4.107 7 C 0.018 3.982 8 N -0.309 5.309 9 C -0.029 4.029 10 H 0.131 0.869 11 C -0.214 4.214 12 C 0.003 3.997 13 H 0.097 0.903 14 N -0.348 5.348 15 C 0.323 3.677 16 O -0.443 6.443 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.696 4.696 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.187 1.187 25 H -0.205 1.205 26 H -0.187 1.187 27 C -0.158 4.158 28 O -0.095 6.095 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.170 0.830 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.121 0.879 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -30.804 12.103 -4.787 33.441 hybrid contribution 0.917 -1.511 -1.749 2.487 sum -29.887 10.592 -6.536 32.375 Atomic orbital electron populations 1.20520 0.78420 1.06395 1.06045 1.27184 0.97951 0.78170 0.98715 1.70371 1.02505 1.31441 1.20618 1.21998 0.93882 0.92873 1.05480 1.20210 0.91196 0.97788 1.03660 1.23339 0.84009 0.94603 1.08763 1.20350 0.88411 0.98026 0.91386 1.60405 1.36136 1.22329 1.12029 1.23061 0.85976 0.94915 0.98939 0.86947 1.24186 0.98702 0.97884 1.00641 1.21820 0.92698 0.89552 0.95606 0.90278 1.45417 1.07811 1.40432 1.41130 1.20068 0.82718 0.82668 0.82292 1.90692 1.70173 1.48634 1.34837 1.23377 0.99342 1.01645 1.03741 1.85590 1.01690 1.52042 1.53177 1.23185 0.98229 1.23838 1.24337 0.89845 1.26113 0.96239 0.99369 0.97330 1.70174 1.06631 1.42266 1.35685 0.85014 0.77018 0.77779 0.78248 1.18655 1.20455 1.18665 1.23371 0.91756 1.01730 0.98976 1.84399 1.17065 1.38086 1.69938 0.87436 0.87219 0.87565 0.89875 0.90663 0.89440 0.88472 0.89862 0.83023 0.91530 0.88088 0.74633 0.87158 0.87097 0.92006 0.87877 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 71.24 0.75 0.36 16 2 C 0.19 3.19 8.34 88.35 0.74 3.92 16 3 N -0.52 -10.84 11.29 -291.98 -3.30 -14.13 16 4 C -0.02 -0.40 7.11 41.26 0.29 -0.11 16 5 C -0.07 -0.88 10.05 71.24 0.72 -0.17 16 6 C -0.05 -0.92 6.90 24.79 0.17 -0.75 16 7 C 0.15 1.73 5.70 85.56 0.49 2.22 16 8 N -0.68 -8.17 6.60 -492.84 -3.25 -11.42 16 9 C 0.08 0.94 4.04 45.44 0.18 1.13 16 10 H 0.11 1.09 7.88 -2.39 -0.02 1.08 16 11 C -0.17 -2.66 7.51 31.18 0.23 -2.42 16 12 C 0.11 2.21 4.33 45.58 0.20 2.41 16 13 H 0.08 2.07 7.46 -2.39 -0.02 2.05 16 14 N -0.69 -16.01 5.26 -439.77 -2.31 -18.33 16 15 C 0.54 19.01 7.85 87.66 0.69 19.70 16 16 O -0.57 -25.70 15.46 -3.03 -0.05 -25.75 16 17 C -0.13 -4.97 6.16 71.23 0.44 -4.53 16 18 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 19 C -0.55 -30.98 9.50 67.95 0.65 -30.34 16 20 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 21 C 0.01 0.81 5.49 84.86 0.47 1.27 16 22 N -0.91 -55.72 13.22 21.65 0.29 -55.43 16 23 Si 1.00 43.13 29.55 68.60 2.03 45.16 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 27 C -0.12 -1.64 7.63 31.12 0.24 -1.40 16 28 O -0.21 -3.97 10.78 -3.71 -0.04 -4.01 16 29 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.77 7.79 -2.39 -0.02 0.75 16 35 H 0.10 1.07 8.13 -2.39 -0.02 1.05 16 36 H 0.08 0.75 7.80 -2.39 -0.02 0.73 16 37 H 0.35 4.04 8.20 -89.70 -0.74 3.30 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.10 1.36 7.83 -2.39 -0.02 1.34 16 40 H 0.42 6.64 8.70 -92.71 -0.81 5.83 16 41 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 42 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 45 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -81.94 396.49 -2.08 -84.02 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -0.52 Total: 18.13 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 6.24 Total: -8.71 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -8.58 Total: -99.31 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.09 Total: -29.76 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -81.94 -2.08 -84.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690266463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.879 kcal (2) G-P(sol) polarization free energy of solvation -81.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds